RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 TRBV7-7A0A0K0K1E9 115 aa12.99□□□□□ -0.33
PTPRF-216ENST00000617451 VAMP3Q15836 100 aa12.99□□□□□ -0.33
PTPRF-216ENST00000617451 Q6JHZ5 121 aa12.99□□□□□ -0.33
PTPRF-216ENST00000617451 LINC00575Q6W349 94 aa12.99□□□□□ -0.33
PTPRF-216ENST00000617451 CLEC2BQ92478 149 aa12.98□□□□□ -0.33
PTPRF-216ENST00000617451 Q75L30 129 aa12.97□□□□□ -0.33
PTPRF-216ENST00000617451 IGFL1Q6UW32 110 aa12.96□□□□□ -0.33
PTPRF-216ENST00000617451 ATP11AUNQ6ZP68 121 aa12.96□□□□□ -0.33
PTPRF-216ENST00000617451 Q6ZQY7 126 aa12.96□□□□□ -0.33
PTPRF-216ENST00000617451 OBSCN-AS1Q96MR7 158 aa12.96□□□□□ -0.33
PTPRF-216ENST00000617451 hADV29S1A0JD25 119 aa12.94□□□□□ -0.34
PTPRF-216ENST00000617451 Q6Q795 121 aa12.94□□□□□ -0.34
PTPRF-216ENST00000617451 OCIAD2Q56VL3 154 aa12.92□□□□□ -0.34
PTPRF-216ENST00000617451 SNRPEP62304 92 aaKnown RBP12.88□□□□□ -0.35
PTPRF-216ENST00000617451 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.84□□□□□ -0.35
PTPRF-216ENST00000617451 LST1O00453 97 aa12.82□□□□□ -0.36
PTPRF-216ENST00000617451 PPDPFLQ8WWR9 84 aa12.82□□□□□ -0.36
PTPRF-216ENST00000617451 USH2AO75445 5202 aa12.82□□□□□ -0.36
PTPRF-216ENST00000617451 Q96NJ1 140 aa12.81□□□□□ -0.36
PTPRF-216ENST00000617451 SSPOA2VEC9 5147 aa12.79□□□□□ -0.36
PTPRF-216ENST00000617451 SNHG12Q9BXW3 62 aa12.79□□□□□ -0.36
PTPRF-216ENST00000617451 KRTAP9-8Q9BYQ0 159 aa12.78□□□□□ -0.36
PTPRF-216ENST00000617451 H3BUT2 72 aa12.77□□□□□ -0.37
PTPRF-216ENST00000617451 CFC1P0CG37 223 aa12.77□□□□□ -0.37
PTPRF-216ENST00000617451 C20orf166-AS1Q96NR2 134 aa12.76□□□□□ -0.37
PTPRF-216ENST00000617451 SCGB1D1O95968 90 aa12.75□□□□□ -0.37
PTPRF-216ENST00000617451 BVES-AS1Q5T3Y7 98 aa12.75□□□□□ -0.37
PTPRF-216ENST00000617451 A8MUU9 505 aa12.72□□□□□ -0.37
PTPRF-216ENST00000617451 KRTAP9-1A8MXZ3 250 aaPredicted RBP12.72□□□□□ -0.37
PTPRF-216ENST00000617451 SS18L2Q9UHA2 77 aa12.72□□□□□ -0.37
PTPRF-216ENST00000617451 HSBP1L1C9JCN9 74 aa12.71□□□□□ -0.37
PTPRF-216ENST00000617451 C12orf57Q99622 126 aa12.71□□□□□ -0.37
PTPRF-216ENST00000617451 KRTAP9-7A8MTY7 169 aa12.68□□□□□ -0.38
PTPRF-216ENST00000617451 TRBV20-1A0A075B6N2 111 aa12.66□□□□□ -0.38
PTPRF-216ENST00000617451 TEN1Q86WV5 123 aa12.65□□□□□ -0.38
PTPRF-216ENST00000617451 HIST1H2BLQ99880 126 aa12.65□□□□□ -0.38
PTPRF-216ENST00000617451 HIST3H2BBQ8N257 126 aa12.64□□□□□ -0.39
PTPRF-216ENST00000617451 HIST1H4GQ99525 98 aa12.64□□□□□ -0.39
PTPRF-216ENST00000617451 A0A087WSZ3 146 aa12.6□□□□□ -0.39
PTPRF-216ENST00000617451 S100A2P29034 98 aa12.59□□□□□ -0.39
PTPRF-216ENST00000617451 NDUFV3P56181 108 aaKnown RBP12.59□□□□□ -0.39
PTPRF-216ENST00000617451 SNCGO76070 127 aa12.56□□□□□ -0.4
PTPRF-216ENST00000617451 DSCR10P59022 87 aa12.56□□□□□ -0.4
PTPRF-216ENST00000617451 FCGBPQ9Y6R7 5405 aaPredicted RBP12.55□□□□□ -0.4
PTPRF-216ENST00000617451 FAM218AQ96MZ4 157 aa12.55□□□□□ -0.4
PTPRF-216ENST00000617451 H0YGX0 51 aa12.54□□□□□ -0.4
PTPRF-216ENST00000617451 MT2AP02795 61 aa12.53□□□□□ -0.4
PTPRF-216ENST00000617451 KRTAP16-1A8MUX0 517 aa12.52□□□□□ -0.41
PTPRF-216ENST00000617451 COX8AP10176 69 aa12.52□□□□□ -0.41
PTPRF-216ENST00000617451 H3BMG7 143 aa12.51□□□□□ -0.41
PTPRF-216ENST00000617451 RAB37Q96AX2 223 aa12.5□□□□□ -0.41
PTPRF-216ENST00000617451 DLEU1O43261 78 aa12.47□□□□□ -0.41
PTPRF-216ENST00000617451 SIGMAR1Q99720 223 aa12.47□□□□□ -0.41
PTPRF-216ENST00000617451 FAM236DA0A1B0GTK5 79 aa12.46□□□□□ -0.41
PTPRF-216ENST00000617451 FAM236CP0DP71 79 aa12.46□□□□□ -0.41
PTPRF-216ENST00000617451 LINC00313P59037 77 aa12.46□□□□□ -0.41
PTPRF-216ENST00000617451 A0A0B4J2C4 111 aa12.45□□□□□ -0.42
PTPRF-216ENST00000617451 A0A1W2PNM2 257 aa12.45□□□□□ -0.42
PTPRF-216ENST00000617451 GHRHP01286 108 aa12.44□□□□□ -0.42
PTPRF-216ENST00000617451 MT1FP04733 61 aa12.44□□□□□ -0.42
PTPRF-216ENST00000617451 LCE2BO14633 110 aa12.43□□□□□ -0.42
PTPRF-216ENST00000617451 FABP2P12104 132 aa12.43□□□□□ -0.42
PTPRF-216ENST00000617451 MPLKIPQ8TAP9 179 aa12.43□□□□□ -0.42
PTPRF-216ENST00000617451 A0A1B0GX51 115 aa12.42□□□□□ -0.42
PTPRF-216ENST00000617451 S100A6P06703 90 aa12.4□□□□□ -0.42
PTPRF-216ENST00000617451 HRES1P13985 223 aa12.4□□□□□ -0.42
PTPRF-216ENST00000617451 IGKV4-1P06312 121 aa12.39□□□□□ -0.43
PTPRF-216ENST00000617451 KRTAP19-1Q8IUB9 90 aa12.39□□□□□ -0.43
PTPRF-216ENST00000617451 KRTAP9-3Q9BYQ3 159 aa12.39□□□□□ -0.43
PTPRF-216ENST00000617451 RBM12B-AS1Q9P1G2 102 aa12.39□□□□□ -0.43
PTPRF-216ENST00000617451 HIGD1BQ9P298 99 aa12.39□□□□□ -0.43
PTPRF-216ENST00000617451 NOTCH2NLQ7Z3S9 236 aa12.37□□□□□ -0.43
PTPRF-216ENST00000617451 C14orf144Q96I85 54 aa12.37□□□□□ -0.43
PTPRF-216ENST00000617451 TRBV7-4A0A0J9YYF1 115 aa12.35□□□□□ -0.43
PTPRF-216ENST00000617451 KRTAP10-10P60014 251 aa12.35□□□□□ -0.43
PTPRF-216ENST00000617451 ANKRD29Q8N6D5 301 aa12.32□□□□□ -0.44
PTPRF-216ENST00000617451 PRO1854Q9UHT4 67 aa12.32□□□□□ -0.44
PTPRF-216ENST00000617451 C2orf91Q6ZV80 131 aa12.31□□□□□ -0.44
PTPRF-216ENST00000617451 LINC00472Q9H8W2 130 aa12.3□□□□□ -0.44
PTPRF-216ENST00000617451 DEFB116Q30KQ4 102 aa12.29□□□□□ -0.44
PTPRF-216ENST00000617451 CEND1Q8N111 149 aa12.28□□□□□ -0.44
PTPRF-216ENST00000617451 TRIAP1O43715 76 aa12.27□□□□□ -0.45
PTPRF-216ENST00000617451 PAM16Q9Y3D7 125 aa12.27□□□□□ -0.45
PTPRF-216ENST00000617451 SPATA45Q537H7 98 aa12.26□□□□□ -0.45
PTPRF-216ENST00000617451 IGHV6-1A0A0B4J1U7 121 aa12.25□□□□□ -0.45
PTPRF-216ENST00000617451 A0A1B0GV72 72 aa12.25□□□□□ -0.45
PTPRF-216ENST00000617451 TMEM238LA0A1B0GVL6 79 aa12.24□□□□□ -0.45
PTPRF-216ENST00000617451 A6NJY4 79 aa12.24□□□□□ -0.45
PTPRF-216ENST00000617451 ORMDL1Q9P0S3 153 aa12.23□□□□□ -0.45
PTPRF-216ENST00000617451 H3BQ85 93 aa12.22□□□□□ -0.45
PTPRF-216ENST00000617451 DNAL4O96015 105 aa12.22□□□□□ -0.45
PTPRF-216ENST00000617451 MACF1Q9UPN3 7388 aaKnown RBP12.22□□□□□ -0.45
PTPRF-216ENST00000617451 FXYD2P54710 66 aa12.21□□□□□ -0.45
PTPRF-216ENST00000617451 CCKP06307 115 aa12.2□□□□□ -0.46
PTPRF-216ENST00000617451 TRACP01848 142 aa12.19□□□□□ -0.46
PTPRF-216ENST00000617451 TMEM256-PLSCR3K7ERE1 68 aa12.18□□□□□ -0.46
PTPRF-216ENST00000617451 MTURNQ8N3F0 131 aa12.17□□□□□ -0.46
PTPRF-216ENST00000617451 VAMP8Q9BV40 100 aa12.17□□□□□ -0.46
PTPRF-216ENST00000617451 SYNE2Q8WXH0 6885 aaKnown RBP12.16□□□□□ -0.46
PTPRF-216ENST00000617451 C8orf87E5RJ46 101 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms