RNA–Protein interactions for RNA: ENST00000615843.4

SPAST-203, Transcript of spastin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SPAST, Length 5,212 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-203ENST00000615843 ZCCHC13Q8WW36 166 aaKnown RBP11.47□□□□□ -0.57
SPAST-203ENST00000615843 KRTAP26-1Q6PEX3 210 aa11.46□□□□□ -0.57
SPAST-203ENST00000615843 DMAC1Q96GE9 116 aa11.46□□□□□ -0.57
SPAST-203ENST00000615843 CHD6Q8TD26 2715 aa11.41□□□□□ -0.58
SPAST-203ENST00000615843 CHD9Q3L8U1 2897 aa11.4□□□□□ -0.58
SPAST-203ENST00000615843 CENPEQ02224 2701 aa11.4□□□□□ -0.58
SPAST-203ENST00000615843 KRTAP29-1A8MX34 341 aaPredicted RBP11.4□□□□□ -0.58
SPAST-203ENST00000615843 PLAC8Q9NZF1 115 aa11.4□□□□□ -0.58
SPAST-203ENST00000615843 MAST4O15021 2626 aa11.37□□□□□ -0.59
SPAST-203ENST00000615843 Q6ZR54 194 aa11.36□□□□□ -0.59
SPAST-203ENST00000615843 KRTAP4-16G5E9R7 235 aaPredicted RBP11.35□□□□□ -0.59
SPAST-203ENST00000615843 ASB16-AS1Q495Z4 193 aa11.33□□□□□ -0.6
SPAST-203ENST00000615843 J3QL48 77 aa11.32□□□□□ -0.6
SPAST-203ENST00000615843 GCN1Q92616 2671 aaKnown RBP11.3□□□□□ -0.6
SPAST-203ENST00000615843 UNC79Q9P2D8 2635 aa11.29□□□□□ -0.6
SPAST-203ENST00000615843 KRTAP1-5Q9BYS1 174 aa11.26□□□□□ -0.61
SPAST-203ENST00000615843 CAMK2N1Q7Z7J9 78 aa11.25□□□□□ -0.61
SPAST-203ENST00000615843 A6NN06 94 aa11.25□□□□□ -0.61
SPAST-203ENST00000615843 LAMA2P24043 3122 aaKnown RBP11.23□□□□□ -0.61
SPAST-203ENST00000615843 ROMO1P60602 79 aa11.23□□□□□ -0.61
SPAST-203ENST00000615843 HTTP42858 3142 aa11.23□□□□□ -0.61
SPAST-203ENST00000615843 Q6ZSA8 131 aa11.22□□□□□ -0.61
SPAST-203ENST00000615843 NBEAL1Q6ZS30 2694 aa11.22□□□□□ -0.61
SPAST-203ENST00000615843 RPL37P61927 97 aaKnown RBP11.22□□□□□ -0.61
SPAST-203ENST00000615843 LCE6AA0A183 80 aa11.21□□□□□ -0.61
SPAST-203ENST00000615843 S4R3F8 94 aa11.21□□□□□ -0.61
SPAST-203ENST00000615843 MGAQ8IWI9 3026 aa11.21□□□□□ -0.61
SPAST-203ENST00000615843 LINC00483Q53H64 154 aa11.21□□□□□ -0.62
SPAST-203ENST00000615843 CFAP46Q8IYW2 2715 aa11.2□□□□□ -0.62
SPAST-203ENST00000615843 H1FX-AS1Q4G0G2 97 aa11.19□□□□□ -0.62
SPAST-203ENST00000615843 SPATA8Q6RVD6 105 aa11.19□□□□□ -0.62
SPAST-203ENST00000615843 A0A0A0MQY5 61 aa11.18□□□□□ -0.62
SPAST-203ENST00000615843 RANBP2P49792 3224 aaKnown RBP11.15□□□□□ -0.62
SPAST-203ENST00000615843 HELZ2Q9BYK8 2649 aaKnown RBP11.14□□□□□ -0.63
SPAST-203ENST00000615843 TRANK1O15050 2925 aa11.12□□□□□ -0.63
SPAST-203ENST00000615843 NOTCH1P46531 2555 aa11.11□□□□□ -0.63
SPAST-203ENST00000615843 MKI67P46013 3256 aaKnown RBP11.1□□□□□ -0.63
SPAST-203ENST00000615843 NBEAL2Q6ZNJ1 2754 aa11.09□□□□□ -0.63
SPAST-203ENST00000615843 A8MU10 97 aa11.08□□□□□ -0.64
SPAST-203ENST00000615843 A0A087X002 238 aa11.07□□□□□ -0.64
SPAST-203ENST00000615843 NOTCH2NLQ7Z3S9 236 aa11.07□□□□□ -0.64
SPAST-203ENST00000615843 STAB1Q9NY15 2570 aa11.07□□□□□ -0.64
SPAST-203ENST00000615843 PANO1I0J062 215 aa11.04□□□□□ -0.64
SPAST-203ENST00000615843 TEX15Q9BXT5 2789 aa11.02□□□□□ -0.65
SPAST-203ENST00000615843 FLG2Q5D862 2391 aaPredicted RBP11.01□□□□□ -0.65
SPAST-203ENST00000615843 TRIOO75962 3097 aa11.01□□□□□ -0.65
SPAST-203ENST00000615843 R4GN34 69 aa11.01□□□□□ -0.65
SPAST-203ENST00000615843 ADM2Q7Z4H4 148 aa11□□□□□ -0.65
SPAST-203ENST00000615843 WDFY4Q6ZS81 3184 aa10.99□□□□□ -0.65
SPAST-203ENST00000615843 FRYQ5TBA9 3013 aa10.99□□□□□ -0.65
SPAST-203ENST00000615843 DMBT1Q9UGM3 2413 aaPredicted RBP10.98□□□□□ -0.65
SPAST-203ENST00000615843 LAMA3Q16787 3333 aa10.97□□□□□ -0.65
SPAST-203ENST00000615843 KRTAP25-1Q3LHN0 102 aa10.97□□□□□ -0.65
SPAST-203ENST00000615843 MAP1AP78559 2803 aaPredicted RBP10.96□□□□□ -0.65
SPAST-203ENST00000615843 ZNF292O60281 2723 aa10.93□□□□□ -0.66
SPAST-203ENST00000615843 FREM2Q5SZK8 3169 aa10.93□□□□□ -0.66
SPAST-203ENST00000615843 COL6A5A8TX70 2615 aa10.92□□□□□ -0.66
SPAST-203ENST00000615843 KRTAP11-1Q8IUC1 163 aa10.92□□□□□ -0.66
SPAST-203ENST00000615843 KRTAP7-1Q8IUC3 87 aa10.92□□□□□ -0.66
SPAST-203ENST00000615843 TEP1Q99973 2627 aaKnown RBP10.88□□□□□ -0.67
SPAST-203ENST00000615843 KRTAP10-1P60331 282 aa10.87□□□□□ -0.67
SPAST-203ENST00000615843 VPS13AQ96RL7 3174 aa10.86□□□□□ -0.67
SPAST-203ENST00000615843 BRCA2P51587 3418 aa10.85□□□□□ -0.67
SPAST-203ENST00000615843 KRTAP10-2P60368 255 aa10.85□□□□□ -0.67
SPAST-203ENST00000615843 KRTAP16-1A8MUX0 517 aa10.84□□□□□ -0.67
SPAST-203ENST00000615843 M0QZ58 72 aa10.84□□□□□ -0.67
SPAST-203ENST00000615843 DSPP15924 2871 aaKnown RBP10.84□□□□□ -0.67
SPAST-203ENST00000615843 SETXQ7Z333 2677 aaKnown RBP10.83□□□□□ -0.68
SPAST-203ENST00000615843 UNC80Q8N2C7 3258 aa10.81□□□□□ -0.68
SPAST-203ENST00000615843 NBEAQ8NFP9 2946 aa10.78□□□□□ -0.68
SPAST-203ENST00000615843 KALRNO60229 2985 aa10.78□□□□□ -0.68
SPAST-203ENST00000615843 BAHCC1Q9P281 2608 aa10.76□□□□□ -0.69
SPAST-203ENST00000615843 UBR5O95071 2799 aaPredicted RBP10.75□□□□□ -0.69
SPAST-203ENST00000615843 XIRP2A4UGR9 3374 aa10.74□□□□□ -0.69
SPAST-203ENST00000615843 ITPR1Q14643 2758 aa10.71□□□□□ -0.69
SPAST-203ENST00000615843 KRTAP13-1Q8IUC0 172 aa10.7□□□□□ -0.7
SPAST-203ENST00000615843 STAB2Q8WWQ8 2551 aa10.7□□□□□ -0.7
SPAST-203ENST00000615843 M0R2T5 61 aa10.69□□□□□ -0.7
SPAST-203ENST00000615843 PRUNE2Q8WUY3 3088 aa10.68□□□□□ -0.7
SPAST-203ENST00000615843 NDUFAF8A1L188 74 aa10.67□□□□□ -0.7
SPAST-203ENST00000615843 CELSR3Q9NYQ7 3312 aa10.64□□□□□ -0.71
SPAST-203ENST00000615843 SEC61BP60468 96 aaKnown RBP10.64□□□□□ -0.71
SPAST-203ENST00000615843 Q6ZRN7 208 aaPredicted RBP10.61□□□□□ -0.71
SPAST-203ENST00000615843 Q5VSD8 79 aa10.58□□□□□ -0.72
SPAST-203ENST00000615843 KRTAP13-2Q52LG2 175 aa10.57□□□□□ -0.72
SPAST-203ENST00000615843 RPS29P62273 56 aaKnown RBP10.57□□□□□ -0.72
SPAST-203ENST00000615843 IGSF10Q6WRI0 2623 aa10.55□□□□□ -0.72
SPAST-203ENST00000615843 NSD1Q96L73 2696 aaPredicted RBP10.55□□□□□ -0.72
SPAST-203ENST00000615843 A8MUU9 505 aa10.54□□□□□ -0.72
SPAST-203ENST00000615843 ASH1LQ9NR48 2969 aaKnown RBP10.52□□□□□ -0.73
SPAST-203ENST00000615843 APCP25054 2843 aa10.5□□□□□ -0.73
SPAST-203ENST00000615843 CDH23Q9H251 3354 aa10.48□□□□□ -0.73
SPAST-203ENST00000615843 DMXL2Q8TDJ6 3036 aa10.46□□□□□ -0.74
SPAST-203ENST00000615843 PLAC4Q8WY50 150 aa10.44□□□□□ -0.74
SPAST-203ENST00000615843 ADGRG4Q8IZF6 3080 aa10.44□□□□□ -0.74
SPAST-203ENST00000615843 VCANP13611 3396 aa10.44□□□□□ -0.74
SPAST-203ENST00000615843 LAMA1P25391 3075 aa10.43□□□□□ -0.74
SPAST-203ENST00000615843 TACC2O95359 2948 aa10.41□□□□□ -0.74
SPAST-203ENST00000615843 DNAH14Q0VDD8 3507 aa10.41□□□□□ -0.74
SPAST-203ENST00000615843 LRBAP50851 2863 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms