RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 A6NED7 52 aa8.08□□□□□ -1.12
LIG1-221ENST00000613670 SPINK6Q6UWN8 80 aa8.08□□□□□ -1.12
LIG1-221ENST00000613670 A8MUN3 132 aa8.08□□□□□ -1.12
LIG1-221ENST00000613670 PMAIP1Q13794 54 aa8.08□□□□□ -1.12
LIG1-221ENST00000613670 C14orf177Q52M58 125 aa8.07□□□□□ -1.12
LIG1-221ENST00000613670 PDZD2O15018 2839 aa8.06□□□□□ -1.12
LIG1-221ENST00000613670 hDV103S1A0JD37 113 aa8.05□□□□□ -1.12
LIG1-221ENST00000613670 KRTAP24-1Q3LI83 254 aa8.05□□□□□ -1.12
LIG1-221ENST00000613670 TENM3Q9P273 2699 aa8.05□□□□□ -1.12
LIG1-221ENST00000613670 TLX1NBP0CAT3 122 aa8.04□□□□□ -1.12
LIG1-221ENST00000613670 IGHV6-1A0A0B4J1U7 121 aa8.04□□□□□ -1.12
LIG1-221ENST00000613670 PKD1L1Q8TDX9 2849 aa8.03□□□□□ -1.12
LIG1-221ENST00000613670 NBPF19A0A087WUL8 3843 aa8.03□□□□□ -1.12
LIG1-221ENST00000613670 TRAV22A0A0B4J277 110 aa8.02□□□□□ -1.13
LIG1-221ENST00000613670 PLA2G2DQ9UNK4 145 aa8.01□□□□□ -1.13
LIG1-221ENST00000613670 C16orf90A8MZG2 172 aa8.01□□□□□ -1.13
LIG1-221ENST00000613670 SPRR4Q96PI1 79 aa8.01□□□□□ -1.13
LIG1-221ENST00000613670 TENM4Q6N022 2769 aa8□□□□□ -1.13
LIG1-221ENST00000613670 STAB2Q8WWQ8 2551 aa7.97□□□□□ -1.13
LIG1-221ENST00000613670 SPRR1AP35321 89 aa7.97□□□□□ -1.13
LIG1-221ENST00000613670 PRR15Q8IV56 129 aa7.97□□□□□ -1.13
LIG1-221ENST00000613670 OTOGQ6ZRI0 2925 aa7.96□□□□□ -1.14
LIG1-221ENST00000613670 IGLV5-37A0A075B6J1 123 aa7.96□□□□□ -1.14
LIG1-221ENST00000613670 A8MWP4 228 aa7.96□□□□□ -1.14
LIG1-221ENST00000613670 SEC61GP60059 68 aa7.95□□□□□ -1.14
LIG1-221ENST00000613670 SPAG11AQ6PDA7 123 aa7.95□□□□□ -1.14
LIG1-221ENST00000613670 TNP2Q05952 138 aa7.94□□□□□ -1.14
LIG1-221ENST00000613670 KRTAP4-16G5E9R7 235 aaPredicted RBP7.93□□□□□ -1.14
LIG1-221ENST00000613670 LIMD2Q9BT23 127 aa7.93□□□□□ -1.14
LIG1-221ENST00000613670 FBN1P35555 2871 aaKnown RBP7.93□□□□□ -1.14
LIG1-221ENST00000613670 MOBPQ13875 183 aa7.91□□□□□ -1.14
LIG1-221ENST00000613670 ZNF469Q96JG9 3925 aaPredicted RBP7.91□□□□□ -1.14
LIG1-221ENST00000613670 RETNLBQ9BQ08 111 aa7.9□□□□□ -1.14
LIG1-221ENST00000613670 COA5Q86WW8 74 aa7.9□□□□□ -1.15
LIG1-221ENST00000613670 KRTAP7-1Q8IUC3 87 aa7.89□□□□□ -1.15
LIG1-221ENST00000613670 CIRBP-AS1Q8TBR5 109 aa7.89□□□□□ -1.15
LIG1-221ENST00000613670 K7EIL1 84 aa7.89□□□□□ -1.15
LIG1-221ENST00000613670 KMT2BQ9UMN6 2715 aaPredicted RBP7.89□□□□□ -1.15
LIG1-221ENST00000613670 Q1T7F1 81 aa7.88□□□□□ -1.15
LIG1-221ENST00000613670 ANAPC11Q9NYG5 84 aa7.88□□□□□ -1.15
LIG1-221ENST00000613670 H3BPC8 53 aa7.88□□□□□ -1.15
LIG1-221ENST00000613670 CNBPP62633 177 aaKnown RBP7.86□□□□□ -1.15
LIG1-221ENST00000613670 CYP4F30PQ9H0H9 118 aa7.86□□□□□ -1.15
LIG1-221ENST00000613670 ZNF706Q9Y5V0 76 aaPredicted RBP7.85□□□□□ -1.15
LIG1-221ENST00000613670 KRTAP1-5Q9BYS1 174 aa7.85□□□□□ -1.15
LIG1-221ENST00000613670 MDFIQ99750 246 aa7.84□□□□□ -1.15
LIG1-221ENST00000613670 ZCCHC13Q8WW36 166 aaKnown RBP7.83□□□□□ -1.16
LIG1-221ENST00000613670 TP53AIP1Q9HCN2 124 aa7.83□□□□□ -1.16
LIG1-221ENST00000613670 TRRAPQ9Y4A5 3859 aa7.82□□□□□ -1.16
LIG1-221ENST00000613670 C9orf163Q8N9P6 203 aa7.82□□□□□ -1.16
LIG1-221ENST00000613670 C8orf17Q9NRJ1 99 aa7.81□□□□□ -1.16
LIG1-221ENST00000613670 NBDYA0A0U1RRE5 68 aa7.81□□□□□ -1.16
LIG1-221ENST00000613670 SPANXA2-OT1Q8N9U9 137 aa7.79□□□□□ -1.16
LIG1-221ENST00000613670 Q8N9P0 234 aaPredicted RBP7.79□□□□□ -1.16
LIG1-221ENST00000613670 LINC00472Q9H8W2 130 aa7.78□□□□□ -1.16
LIG1-221ENST00000613670 KRTAP11-1Q8IUC1 163 aa7.77□□□□□ -1.17
LIG1-221ENST00000613670 MRPL34Q9BQ48 92 aaKnown RBP7.77□□□□□ -1.17
LIG1-221ENST00000613670 MMP24-AS1A0A0U1RRL7 71 aa7.76□□□□□ -1.17
LIG1-221ENST00000613670 Q5VV11 94 aa7.76□□□□□ -1.17
LIG1-221ENST00000613670 LCE6AA0A183 80 aa7.75□□□□□ -1.17
LIG1-221ENST00000613670 IGLV8-61A0A075B6I0 122 aa7.75□□□□□ -1.17
LIG1-221ENST00000613670 LOC101927531A0A1B0GV80 90 aa7.75□□□□□ -1.17
LIG1-221ENST00000613670 A8MU10 97 aa7.75□□□□□ -1.17
LIG1-221ENST00000613670 IGLV5-52A0A0A0MRZ9 124 aa7.75□□□□□ -1.17
LIG1-221ENST00000613670 A0A1B0GVX0 72 aa7.75□□□□□ -1.17
LIG1-221ENST00000613670 NUPR2A6NF83 97 aa7.74□□□□□ -1.17
LIG1-221ENST00000613670 KRTAP29-1A8MX34 341 aaPredicted RBP7.74□□□□□ -1.17
LIG1-221ENST00000613670 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.73□□□□□ -1.17
LIG1-221ENST00000613670 PRR26Q8N8Z3 221 aa7.72□□□□□ -1.17
LIG1-221ENST00000613670 APLNQ9ULZ1 77 aa7.72□□□□□ -1.17
LIG1-221ENST00000613670 AKAP9Q99996 3911 aa7.72□□□□□ -1.17
LIG1-221ENST00000613670 LY6G6CO95867 125 aa7.72□□□□□ -1.17
LIG1-221ENST00000613670 PANO1I0J062 215 aa7.71□□□□□ -1.17
LIG1-221ENST00000613670 RTL8CO15255 209 aa7.71□□□□□ -1.17
LIG1-221ENST00000613670 SRRM2Q9UQ35 2752 aaKnown RBP7.71□□□□□ -1.17
LIG1-221ENST00000613670 PSORS1C2Q9UIG4 136 aa7.71□□□□□ -1.18
LIG1-221ENST00000613670 IGLV7-46A0A075B6I9 117 aa7.71□□□□□ -1.18
LIG1-221ENST00000613670 CD164Q04900 197 aa7.71□□□□□ -1.18
LIG1-221ENST00000613670 C4orf48Q5BLP8 95 aa7.71□□□□□ -1.18
LIG1-221ENST00000613670 TENM2Q9NT68 2774 aa7.7□□□□□ -1.18
LIG1-221ENST00000613670 ANK3Q12955 4377 aaKnown RBP7.69□□□□□ -1.18
LIG1-221ENST00000613670 IGKV2D-30A0A075B6S6 120 aa7.68□□□□□ -1.18
LIG1-221ENST00000613670 IGKV2-30P06310 120 aa7.68□□□□□ -1.18
LIG1-221ENST00000613670 SPRR1BP22528 89 aa7.68□□□□□ -1.18
LIG1-221ENST00000613670 SPINK1P00995 79 aa7.68□□□□□ -1.18
LIG1-221ENST00000613670 ATP11AUNQ6ZP68 121 aa7.68□□□□□ -1.18
LIG1-221ENST00000613670 ACYP2P14621 99 aa7.67□□□□□ -1.18
LIG1-221ENST00000613670 ZNF861PO60384 105 aa7.65□□□□□ -1.18
LIG1-221ENST00000613670 A0A087WTM6 91 aa7.65□□□□□ -1.19
LIG1-221ENST00000613670 A0A1B0GU69 56 aa7.64□□□□□ -1.19
LIG1-221ENST00000613670 KTN1-AS1Q86SY8 53 aa7.64□□□□□ -1.19
LIG1-221ENST00000613670 C1orf134Q5TEV5 83 aa7.63□□□□□ -1.19
LIG1-221ENST00000613670 SPACA4Q8TDM5 124 aa7.62□□□□□ -1.19
LIG1-221ENST00000613670 Q75L30 129 aa7.62□□□□□ -1.19
LIG1-221ENST00000613670 HRES1P13985 223 aa7.62□□□□□ -1.19
LIG1-221ENST00000613670 LINC00313P59037 77 aa7.62□□□□□ -1.19
LIG1-221ENST00000613670 CDC42SE1Q9NRR8 79 aa7.61□□□□□ -1.19
LIG1-221ENST00000613670 A0A087X002 238 aa7.6□□□□□ -1.19
LIG1-221ENST00000613670 NOTCH2NLQ7Z3S9 236 aa7.6□□□□□ -1.19
LIG1-221ENST00000613670 SPINK7P58062 85 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 108.3 ms