RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 TRAV22A0A0B4J277 110 aa11.66□□□□□ -0.54
UPF1-210ENST00000600689 A8MUN3 132 aa11.66□□□□□ -0.54
UPF1-210ENST00000600689 HUWE1Q7Z6Z7 4374 aaKnown RBP11.66□□□□□ -0.54
UPF1-210ENST00000600689 MGAM2Q2M2H8 2515 aa11.66□□□□□ -0.54
UPF1-210ENST00000600689 IGFL1Q6UW32 110 aa11.66□□□□□ -0.54
UPF1-210ENST00000600689 CSMD3Q7Z407 3707 aa11.65□□□□□ -0.54
UPF1-210ENST00000600689 SPRR4Q96PI1 79 aa11.65□□□□□ -0.54
UPF1-210ENST00000600689 ZCCHC13Q8WW36 166 aaKnown RBP11.64□□□□□ -0.55
UPF1-210ENST00000600689 REG3GQ6UW15 175 aa11.63□□□□□ -0.55
UPF1-210ENST00000600689 COL7A1Q02388 2944 aa11.61□□□□□ -0.55
UPF1-210ENST00000600689 SPRR1AP35321 89 aa11.61□□□□□ -0.55
UPF1-210ENST00000600689 MP68P56378 58 aa11.61□□□□□ -0.55
UPF1-210ENST00000600689 LINC00588Q9Y4M8 146 aa11.6□□□□□ -0.55
UPF1-210ENST00000600689 LCE6AA0A183 80 aa11.6□□□□□ -0.55
UPF1-210ENST00000600689 K7EIL1 84 aa11.57□□□□□ -0.56
UPF1-210ENST00000600689 Q1T7F1 81 aa11.56□□□□□ -0.56
UPF1-210ENST00000600689 DNAH10OSP0CZ25 163 aa11.56□□□□□ -0.56
UPF1-210ENST00000600689 SEC61GP60059 68 aa11.56□□□□□ -0.56
UPF1-210ENST00000600689 TLX1NBP0CAT3 122 aa11.55□□□□□ -0.56
UPF1-210ENST00000600689 UBE2AP49459 152 aa11.55□□□□□ -0.56
UPF1-210ENST00000600689 H0Y9P7 68 aa11.54□□□□□ -0.56
UPF1-210ENST00000600689 DNAH1Q9P2D7 4330 aa11.54□□□□□ -0.56
UPF1-210ENST00000600689 B9D2Q9BPU9 175 aa11.54□□□□□ -0.56
UPF1-210ENST00000600689 A0A1B0GW54 56 aa11.53□□□□□ -0.56
UPF1-210ENST00000600689 STAB2Q8WWQ8 2551 aa11.52□□□□□ -0.56
UPF1-210ENST00000600689 CASC2Q6XLA1 102 aa11.52□□□□□ -0.56
UPF1-210ENST00000600689 PLA2G2DQ9UNK4 145 aa11.52□□□□□ -0.56
UPF1-210ENST00000600689 CHTF8P0CG12 524 aa11.51□□□□□ -0.57
UPF1-210ENST00000600689 H0Y9J4 135 aa11.51□□□□□ -0.57
UPF1-210ENST00000600689 F8WDY8 70 aa11.51□□□□□ -0.57
UPF1-210ENST00000600689 DNAH10Q8IVF4 4471 aa11.5□□□□□ -0.57
UPF1-210ENST00000600689 CHKB-CPT1BH3BT56 60 aa11.5□□□□□ -0.57
UPF1-210ENST00000600689 PMAIP1Q13794 54 aa11.5□□□□□ -0.57
UPF1-210ENST00000600689 IGLV5-37A0A075B6J1 123 aa11.49□□□□□ -0.57
UPF1-210ENST00000600689 SPTSSBQ8NFR3 76 aa11.49□□□□□ -0.57
UPF1-210ENST00000600689 PRR15Q8IV56 129 aa11.48□□□□□ -0.57
UPF1-210ENST00000600689 NDUFB1O75438 58 aa11.48□□□□□ -0.57
UPF1-210ENST00000600689 PRR15LQ9BU68 103 aa11.48□□□□□ -0.57
UPF1-210ENST00000600689 CYP4F30PQ9H0H9 118 aa11.47□□□□□ -0.57
UPF1-210ENST00000600689 PCOTHQ58A44 107 aa11.47□□□□□ -0.57
UPF1-210ENST00000600689 PHF5AQ7RTV0 110 aaKnown RBP11.47□□□□□ -0.57
UPF1-210ENST00000600689 TENM2Q9NT68 2774 aa11.47□□□□□ -0.57
UPF1-210ENST00000600689 KRTAP11-1Q8IUC1 163 aa11.46□□□□□ -0.58
UPF1-210ENST00000600689 DNAH7Q8WXX0 4024 aa11.45□□□□□ -0.58
UPF1-210ENST00000600689 CNBPP62633 177 aaKnown RBP11.44□□□□□ -0.58
UPF1-210ENST00000600689 Q5VV11 94 aa11.44□□□□□ -0.58
UPF1-210ENST00000600689 DNAH9Q9NYC9 4486 aa11.43□□□□□ -0.58
UPF1-210ENST00000600689 KRTAP29-1A8MX34 341 aaPredicted RBP11.39□□□□□ -0.59
UPF1-210ENST00000600689 Q8N9P0 234 aaPredicted RBP11.37□□□□□ -0.59
UPF1-210ENST00000600689 KRTAP1-5Q9BYS1 174 aa11.37□□□□□ -0.59
UPF1-210ENST00000600689 MDFIQ99750 246 aa11.37□□□□□ -0.59
UPF1-210ENST00000600689 IGLV9-49A0A0B4J1Y8 123 aa11.35□□□□□ -0.59
UPF1-210ENST00000600689 A6NED7 52 aa11.34□□□□□ -0.59
UPF1-210ENST00000600689 NDUFS5O43920 106 aa11.34□□□□□ -0.59
UPF1-210ENST00000600689 A8MWP4 228 aa11.34□□□□□ -0.59
UPF1-210ENST00000600689 C16orf90A8MZG2 172 aa11.33□□□□□ -0.6
UPF1-210ENST00000600689 COA5Q86WW8 74 aa11.32□□□□□ -0.6
UPF1-210ENST00000600689 SPAG11AQ6PDA7 123 aa11.3□□□□□ -0.6
UPF1-210ENST00000600689 LINC00472Q9H8W2 130 aa11.3□□□□□ -0.6
UPF1-210ENST00000600689 PLECQ15149 4684 aaKnown RBP11.29□□□□□ -0.6
UPF1-210ENST00000600689 UBE2DNLQ8IWF7 75 aa11.27□□□□□ -0.6
UPF1-210ENST00000600689 IGLV8-61A0A075B6I0 122 aa11.27□□□□□ -0.61
UPF1-210ENST00000600689 MMP24-AS1A0A0U1RRL7 71 aa11.26□□□□□ -0.61
UPF1-210ENST00000600689 LIMD2Q9BT23 127 aa11.26□□□□□ -0.61
UPF1-210ENST00000600689 LCA10Q71F78 164 aa11.24□□□□□ -0.61
UPF1-210ENST00000600689 C9orf163Q8N9P6 203 aa11.24□□□□□ -0.61
UPF1-210ENST00000600689 SPANXA2-OT1Q8N9U9 137 aa11.24□□□□□ -0.61
UPF1-210ENST00000600689 IGHV6-1A0A0B4J1U7 121 aa11.24□□□□□ -0.61
UPF1-210ENST00000600689 PANO1I0J062 215 aa11.22□□□□□ -0.61
UPF1-210ENST00000600689 CD164Q04900 197 aa11.22□□□□□ -0.61
UPF1-210ENST00000600689 DYNC2H1Q8NCM8 4307 aaKnown RBP11.22□□□□□ -0.61
UPF1-210ENST00000600689 ANAPC11Q9NYG5 84 aa11.21□□□□□ -0.61
UPF1-210ENST00000600689 APLNQ9ULZ1 77 aa11.2□□□□□ -0.62
UPF1-210ENST00000600689 PRKDCP78527 4128 aaKnown RBP11.2□□□□□ -0.62
UPF1-210ENST00000600689 H3BPC8 53 aa11.18□□□□□ -0.62
UPF1-210ENST00000600689 STARD9Q9P2P6 4700 aa11.18□□□□□ -0.62
UPF1-210ENST00000600689 IGLV7-46A0A075B6I9 117 aa11.15□□□□□ -0.62
UPF1-210ENST00000600689 SPINK6Q6UWN8 80 aa11.14□□□□□ -0.63
UPF1-210ENST00000600689 A0A087X002 238 aa11.12□□□□□ -0.63
UPF1-210ENST00000600689 NOTCH2NLQ7Z3S9 236 aa11.12□□□□□ -0.63
UPF1-210ENST00000600689 C8orf17Q9NRJ1 99 aa11.11□□□□□ -0.63
UPF1-210ENST00000600689 SPRR1BP22528 89 aa11.1□□□□□ -0.63
UPF1-210ENST00000600689 CDK2AP2O75956 126 aa11.1□□□□□ -0.63
UPF1-210ENST00000600689 MOBPQ13875 183 aa11.1□□□□□ -0.63
UPF1-210ENST00000600689 Q75L30 129 aa11.1□□□□□ -0.63
UPF1-210ENST00000600689 MEGF8Q7Z7M0 2845 aa11.1□□□□□ -0.63
UPF1-210ENST00000600689 LOC101927531A0A1B0GV80 90 aa11.1□□□□□ -0.63
UPF1-210ENST00000600689 SPINK7P58062 85 aa11.09□□□□□ -0.63
UPF1-210ENST00000600689 DNHD1Q96M86 4753 aa11.09□□□□□ -0.63
UPF1-210ENST00000600689 Q96NJ1 140 aa11.07□□□□□ -0.64
UPF1-210ENST00000600689 KMT2AQ03164 3969 aa11.07□□□□□ -0.64
UPF1-210ENST00000600689 KTN1-AS1Q86SY8 53 aa11.07□□□□□ -0.64
UPF1-210ENST00000600689 PRR26Q8N8Z3 221 aa11.07□□□□□ -0.64
UPF1-210ENST00000600689 HRES1P13985 223 aa11.06□□□□□ -0.64
UPF1-210ENST00000600689 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.05□□□□□ -0.64
UPF1-210ENST00000600689 ATP11AUNQ6ZP68 121 aa11.04□□□□□ -0.64
UPF1-210ENST00000600689 RBM12B-AS1Q9P1G2 102 aa11.04□□□□□ -0.64
UPF1-210ENST00000600689 RETNLBQ9BQ08 111 aa11.03□□□□□ -0.64
UPF1-210ENST00000600689 NBDYA0A0U1RRE5 68 aa11.02□□□□□ -0.65
UPF1-210ENST00000600689 C14orf177Q52M58 125 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms