RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 PRO0461Q9UI25 63 aa7.65□□□□□ -1.18
UPF1-208ENST00000600012 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.64□□□□□ -1.19
UPF1-208ENST00000600012 ST20-AS1Q8NBB2 130 aa7.64□□□□□ -1.19
UPF1-208ENST00000600012 ZNF861PO60384 105 aa7.63□□□□□ -1.19
UPF1-208ENST00000600012 SMCPP49901 116 aaPredicted RBP7.63□□□□□ -1.19
UPF1-208ENST00000600012 ORMDL1Q9P0S3 153 aa7.63□□□□□ -1.19
UPF1-208ENST00000600012 DEFB105AQ8NG35 78 aa7.62□□□□□ -1.19
UPF1-208ENST00000600012 H3BT86 120 aa7.61□□□□□ -1.19
UPF1-208ENST00000600012 BAALC-AS2P0C853 105 aa7.61□□□□□ -1.19
UPF1-208ENST00000600012 LINC01547P58512 204 aaPredicted RBP7.6□□□□□ -1.19
UPF1-208ENST00000600012 F8W1H4 67 aa7.59□□□□□ -1.19
UPF1-208ENST00000600012 ANKRD29Q8N6D5 301 aa7.59□□□□□ -1.19
UPF1-208ENST00000600012 OCIAD2Q56VL3 154 aa7.58□□□□□ -1.2
UPF1-208ENST00000600012 Q8N377 158 aa7.58□□□□□ -1.2
UPF1-208ENST00000600012 IGLV5-48A0A075B6I7 105 aa7.57□□□□□ -1.2
UPF1-208ENST00000600012 A0A1B0GV72 72 aa7.56□□□□□ -1.2
UPF1-208ENST00000600012 TMEM256-PLSCR3K7ERE1 68 aa7.56□□□□□ -1.2
UPF1-208ENST00000600012 GAGE2AQ6NT46 116 aa7.56□□□□□ -1.2
UPF1-208ENST00000600012 SPRR4Q96PI1 79 aa7.56□□□□□ -1.2
UPF1-208ENST00000600012 TEX49A0A1B0GTD5 131 aa7.55□□□□□ -1.2
UPF1-208ENST00000600012 C3orf22Q8N5N4 141 aa7.55□□□□□ -1.2
UPF1-208ENST00000600012 H3BQ85 93 aa7.54□□□□□ -1.2
UPF1-208ENST00000600012 ETDBQ3ZM63 59 aa7.54□□□□□ -1.2
UPF1-208ENST00000600012 ZNF706Q9Y5V0 76 aaPredicted RBP7.54□□□□□ -1.2
UPF1-208ENST00000600012 GHRHP01286 108 aa7.53□□□□□ -1.2
UPF1-208ENST00000600012 SPRR1BP22528 89 aa7.53□□□□□ -1.2
UPF1-208ENST00000600012 PRR26Q8N8Z3 221 aa7.53□□□□□ -1.2
UPF1-208ENST00000600012 PPDPFLQ8WWR9 84 aa7.53□□□□□ -1.2
UPF1-208ENST00000600012 LAMTOR3Q9UHA4 124 aa7.53□□□□□ -1.2
UPF1-208ENST00000600012 NDUFV3P56181 108 aaKnown RBP7.52□□□□□ -1.21
UPF1-208ENST00000600012 SMIM29Q86T20 159 aa7.52□□□□□ -1.21
UPF1-208ENST00000600012 TEN1Q86WV5 123 aa7.52□□□□□ -1.21
UPF1-208ENST00000600012 ANAPC11Q9NYG5 84 aa7.52□□□□□ -1.21
UPF1-208ENST00000600012 LINC00483Q53H64 154 aa7.5□□□□□ -1.21
UPF1-208ENST00000600012 LPAP08519 4548 aa7.49□□□□□ -1.21
UPF1-208ENST00000600012 F8WEM9 126 aa7.47□□□□□ -1.21
UPF1-208ENST00000600012 JMJD7-PLA2G4BH0Y9G9 81 aa7.47□□□□□ -1.21
UPF1-208ENST00000600012 KRTAP1-4P0C5Y4 121 aa7.47□□□□□ -1.21
UPF1-208ENST00000600012 OBSCN-AS1Q96MR7 158 aa7.47□□□□□ -1.21
UPF1-208ENST00000600012 C14orf132Q9NPU4 83 aa7.47□□□□□ -1.21
UPF1-208ENST00000600012 IGLV9-49A0A0B4J1Y8 123 aa7.46□□□□□ -1.22
UPF1-208ENST00000600012 RBM3P98179 157 aaKnown RBP7.46□□□□□ -1.22
UPF1-208ENST00000600012 C9orf153Q5TBE3 101 aa7.45□□□□□ -1.22
UPF1-208ENST00000600012 A0A087X002 238 aa7.43□□□□□ -1.22
UPF1-208ENST00000600012 A0A0G2JQZ4 141 aa7.43□□□□□ -1.22
UPF1-208ENST00000600012 MOBPQ13875 183 aa7.43□□□□□ -1.22
UPF1-208ENST00000600012 PRR4Q16378 134 aa7.43□□□□□ -1.22
UPF1-208ENST00000600012 IGLV8-61A0A075B6I0 122 aa7.42□□□□□ -1.22
UPF1-208ENST00000600012 TRBV7-4A0A0J9YYF1 115 aa7.42□□□□□ -1.22
UPF1-208ENST00000600012 FAM229BQ4G0N7 80 aa7.42□□□□□ -1.22
UPF1-208ENST00000600012 DSCR8Q96T75 97 aa7.42□□□□□ -1.22
UPF1-208ENST00000600012 KRTAP13-2Q52LG2 175 aa7.41□□□□□ -1.22
UPF1-208ENST00000600012 Q8NBF4 154 aa7.41□□□□□ -1.22
UPF1-208ENST00000600012 LOC110117498A0A087WWA1 95 aa7.4□□□□□ -1.22
UPF1-208ENST00000600012 IGFL1Q6UW32 110 aa7.4□□□□□ -1.22
UPF1-208ENST00000600012 Q6ZQT0 140 aa7.4□□□□□ -1.22
UPF1-208ENST00000600012 CRYGAP11844 174 aa7.39□□□□□ -1.23
UPF1-208ENST00000600012 VPS25Q9BRG1 176 aa7.39□□□□□ -1.23
UPF1-208ENST00000600012 A0A0U1RQV1 116 aa7.38□□□□□ -1.23
UPF1-208ENST00000600012 CCKP06307 115 aa7.37□□□□□ -1.23
UPF1-208ENST00000600012 Q6JHZ5 121 aa7.37□□□□□ -1.23
UPF1-208ENST00000600012 A0A1W2PNM2 257 aa7.36□□□□□ -1.23
UPF1-208ENST00000600012 PDE6GP18545 87 aa7.36□□□□□ -1.23
UPF1-208ENST00000600012 TYMSOSQ8TAI1 123 aa7.34□□□□□ -1.23
UPF1-208ENST00000600012 HRCT1Q6UXD1 115 aa7.33□□□□□ -1.24
UPF1-208ENST00000600012 SSBP3-AS1Q7Z2R9 100 aa7.33□□□□□ -1.24
UPF1-208ENST00000600012 J3QR89 54 aa7.32□□□□□ -1.24
UPF1-208ENST00000600012 MUC2Q02817 5179 aa7.31□□□□□ -1.24
UPF1-208ENST00000600012 K7ERU9 68 aa7.31□□□□□ -1.24
UPF1-208ENST00000600012 C21orf62-AS1Q17RA5 79 aa7.3□□□□□ -1.24
UPF1-208ENST00000600012 Q6Q795 121 aa7.29□□□□□ -1.24
UPF1-208ENST00000600012 A0A087WSZ3 146 aa7.28□□□□□ -1.24
UPF1-208ENST00000600012 FAM240AA0A1B0GVK7 77 aa7.28□□□□□ -1.24
UPF1-208ENST00000600012 LINC00846Q9NV44 126 aa7.28□□□□□ -1.24
UPF1-208ENST00000600012 TRBV7-7A0A0K0K1E9 115 aa7.27□□□□□ -1.25
UPF1-208ENST00000600012 KRTAP9-2Q9BYQ4 174 aa7.27□□□□□ -1.25
UPF1-208ENST00000600012 ACYP1P07311 99 aa7.26□□□□□ -1.25
UPF1-208ENST00000600012 LINC00304Q8N9R0 145 aa7.26□□□□□ -1.25
UPF1-208ENST00000600012 CD164Q04900 197 aa7.25□□□□□ -1.25
UPF1-208ENST00000600012 A0A1B0GW54 56 aa7.23□□□□□ -1.25
UPF1-208ENST00000600012 C4orf48Q5BLP8 95 aa7.23□□□□□ -1.25
UPF1-208ENST00000600012 LCE2AQ5TA79 106 aaPredicted RBP7.23□□□□□ -1.25
UPF1-208ENST00000600012 Q6ZVQ6 151 aa7.22□□□□□ -1.25
UPF1-208ENST00000600012 CDIP1Q9H305 208 aa7.22□□□□□ -1.25
UPF1-208ENST00000600012 RETNLBQ9BQ08 111 aa7.21□□□□□ -1.26
UPF1-208ENST00000600012 UBL5Q9BZL1 73 aa7.21□□□□□ -1.26
UPF1-208ENST00000600012 NREPQ16612 68 aa7.2□□□□□ -1.26
UPF1-208ENST00000600012 TPRXLQ17RH7 258 aa7.2□□□□□ -1.26
UPF1-208ENST00000600012 SS18L2Q9UHA2 77 aa7.2□□□□□ -1.26
UPF1-208ENST00000600012 FAT4Q6V0I7 4981 aa7.19□□□□□ -1.26
UPF1-208ENST00000600012 SPAG11AQ6PDA7 123 aa7.19□□□□□ -1.26
UPF1-208ENST00000600012 SPINK1P00995 79 aa7.18□□□□□ -1.26
UPF1-208ENST00000600012 IGLV7-46A0A075B6I9 117 aa7.17□□□□□ -1.26
UPF1-208ENST00000600012 DEFB116Q30KQ4 102 aa7.17□□□□□ -1.26
UPF1-208ENST00000600012 LIMD2Q9BT23 127 aa7.17□□□□□ -1.26
UPF1-208ENST00000600012 IGKV3D-7A0A0C4DH55 119 aa7.15□□□□□ -1.26
UPF1-208ENST00000600012 LINC00643Q86TS7 51 aa7.15□□□□□ -1.26
UPF1-208ENST00000600012 Q96NJ1 140 aa7.15□□□□□ -1.26
UPF1-208ENST00000600012 RPS29P62273 56 aaKnown RBP7.14□□□□□ -1.27
UPF1-208ENST00000600012 Q5XG85 94 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms