RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 VAMP3Q15836 100 aa11.84□□□□□ -0.51
SHMT1-210ENST00000583780 RAB37Q96AX2 223 aa11.83□□□□□ -0.52
SHMT1-210ENST00000583780 NHP2Q9NX24 153 aaKnown RBP11.83□□□□□ -0.52
SHMT1-210ENST00000583780 H7C2G1 150 aa11.82□□□□□ -0.52
SHMT1-210ENST00000583780 CFC1P0CG37 223 aa11.81□□□□□ -0.52
SHMT1-210ENST00000583780 LAMTOR3Q9UHA4 124 aa11.81□□□□□ -0.52
SHMT1-210ENST00000583780 Q1RN00 199 aa11.8□□□□□ -0.52
SHMT1-210ENST00000583780 CEND1Q8N111 149 aa11.8□□□□□ -0.52
SHMT1-210ENST00000583780 TEX49A0A1B0GTD5 131 aa11.79□□□□□ -0.52
SHMT1-210ENST00000583780 A0A0B4J2C4 111 aa11.77□□□□□ -0.53
SHMT1-210ENST00000583780 LINC00575Q6W349 94 aa11.77□□□□□ -0.53
SHMT1-210ENST00000583780 TMEM238LA0A1B0GVL6 79 aa11.75□□□□□ -0.53
SHMT1-210ENST00000583780 A6NJY4 79 aa11.75□□□□□ -0.53
SHMT1-210ENST00000583780 FXYD2P54710 66 aa11.75□□□□□ -0.53
SHMT1-210ENST00000583780 BVES-AS1Q5T3Y7 98 aa11.75□□□□□ -0.53
SHMT1-210ENST00000583780 IGLV5-48A0A075B6I7 105 aa11.74□□□□□ -0.53
SHMT1-210ENST00000583780 hADV29S1A0JD25 119 aa11.74□□□□□ -0.53
SHMT1-210ENST00000583780 C9orf92A6NGG3 77 aa11.74□□□□□ -0.53
SHMT1-210ENST00000583780 HSD52Q0P140 79 aa11.72□□□□□ -0.53
SHMT1-210ENST00000583780 UQCR10Q9UDW1 63 aa11.72□□□□□ -0.53
SHMT1-210ENST00000583780 FLGP20930 4061 aaPredicted RBP11.72□□□□□ -0.53
SHMT1-210ENST00000583780 HRCT1Q6UXD1 115 aa11.71□□□□□ -0.53
SHMT1-210ENST00000583780 Q6ZQY7 126 aa11.71□□□□□ -0.53
SHMT1-210ENST00000583780 SMIM29Q86T20 159 aa11.71□□□□□ -0.53
SHMT1-210ENST00000583780 PRO1854Q9UHT4 67 aa11.69□□□□□ -0.54
SHMT1-210ENST00000583780 M0R2T5 61 aa11.67□□□□□ -0.54
SHMT1-210ENST00000583780 PRO1933Q9H354 126 aa11.67□□□□□ -0.54
SHMT1-210ENST00000583780 F8WEM9 126 aa11.64□□□□□ -0.55
SHMT1-210ENST00000583780 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.64□□□□□ -0.55
SHMT1-210ENST00000583780 K7ERJ3 54 aa11.63□□□□□ -0.55
SHMT1-210ENST00000583780 LIMD2Q9BT23 127 aa11.63□□□□□ -0.55
SHMT1-210ENST00000583780 A0A0G2JQZ4 141 aa11.62□□□□□ -0.55
SHMT1-210ENST00000583780 H0YGX0 51 aa11.62□□□□□ -0.55
SHMT1-210ENST00000583780 KRTAP9-7A8MTY7 169 aa11.61□□□□□ -0.55
SHMT1-210ENST00000583780 FAM218AQ96MZ4 157 aa11.61□□□□□ -0.55
SHMT1-210ENST00000583780 SNCGO76070 127 aa11.6□□□□□ -0.55
SHMT1-210ENST00000583780 KRTAP9-1A8MXZ3 250 aaPredicted RBP11.59□□□□□ -0.55
SHMT1-210ENST00000583780 TRIAP1O43715 76 aa11.59□□□□□ -0.55
SHMT1-210ENST00000583780 SMIM6P0DI80 62 aa11.58□□□□□ -0.56
SHMT1-210ENST00000583780 CD164Q04900 197 aa11.57□□□□□ -0.56
SHMT1-210ENST00000583780 PSMB2P49721 201 aa11.56□□□□□ -0.56
SHMT1-210ENST00000583780 SNHG12Q9BXW3 62 aa11.56□□□□□ -0.56
SHMT1-210ENST00000583780 PPDPFLQ8WWR9 84 aa11.55□□□□□ -0.56
SHMT1-210ENST00000583780 COX6B2Q6YFQ2 88 aa11.54□□□□□ -0.56
SHMT1-210ENST00000583780 RPL37P61927 97 aaKnown RBP11.53□□□□□ -0.56
SHMT1-210ENST00000583780 CLEC2BQ92478 149 aa11.53□□□□□ -0.56
SHMT1-210ENST00000583780 OCIAD2Q56VL3 154 aa11.52□□□□□ -0.57
SHMT1-210ENST00000583780 A0A1B0GX51 115 aa11.5□□□□□ -0.57
SHMT1-210ENST00000583780 C1orf195Q5TG92 126 aa11.5□□□□□ -0.57
SHMT1-210ENST00000583780 Q6JHZ5 121 aa11.5□□□□□ -0.57
SHMT1-210ENST00000583780 IGFL1Q6UW32 110 aa11.49□□□□□ -0.57
SHMT1-210ENST00000583780 H3BUT2 72 aa11.48□□□□□ -0.57
SHMT1-210ENST00000583780 COX6CP09669 75 aa11.48□□□□□ -0.57
SHMT1-210ENST00000583780 Q5XG85 94 aa11.48□□□□□ -0.57
SHMT1-210ENST00000583780 LOC105371267A0A1B0GV96 52 aa11.46□□□□□ -0.57
SHMT1-210ENST00000583780 DNAL4O96015 105 aa11.46□□□□□ -0.57
SHMT1-210ENST00000583780 FABP2P12104 132 aa11.45□□□□□ -0.58
SHMT1-210ENST00000583780 M0R143 59 aa11.44□□□□□ -0.58
SHMT1-210ENST00000583780 GHRHP01286 108 aa11.44□□□□□ -0.58
SHMT1-210ENST00000583780 NDUFV3P56181 108 aaKnown RBP11.44□□□□□ -0.58
SHMT1-210ENST00000583780 TCL1BO95988 128 aa11.42□□□□□ -0.58
SHMT1-210ENST00000583780 SSPOA2VEC9 5147 aa11.41□□□□□ -0.58
SHMT1-210ENST00000583780 TSTD3H0UI37 97 aa11.41□□□□□ -0.58
SHMT1-210ENST00000583780 SCGB1C2P0DMR2 95 aa11.41□□□□□ -0.58
SHMT1-210ENST00000583780 TRBV7-7A0A0K0K1E9 115 aa11.4□□□□□ -0.58
SHMT1-210ENST00000583780 ORMDL1Q9P0S3 153 aa11.4□□□□□ -0.58
SHMT1-210ENST00000583780 H3BMG7 143 aa11.38□□□□□ -0.59
SHMT1-210ENST00000583780 KRTAP9-8Q9BYQ0 159 aa11.36□□□□□ -0.59
SHMT1-210ENST00000583780 USH2AO75445 5202 aa11.35□□□□□ -0.59
SHMT1-210ENST00000583780 A0A1B0GV72 72 aa11.35□□□□□ -0.59
SHMT1-210ENST00000583780 NAA38Q9BRA0 125 aaKnown RBP11.34□□□□□ -0.59
SHMT1-210ENST00000583780 LST1O00453 97 aa11.33□□□□□ -0.6
SHMT1-210ENST00000583780 H3BQ85 93 aa11.32□□□□□ -0.6
SHMT1-210ENST00000583780 TRACP01848 142 aa11.32□□□□□ -0.6
SHMT1-210ENST00000583780 BATFQ16520 125 aa11.32□□□□□ -0.6
SHMT1-210ENST00000583780 TMEM256-PLSCR3K7ERE1 68 aa11.31□□□□□ -0.6
SHMT1-210ENST00000583780 Q6Q795 121 aa11.29□□□□□ -0.6
SHMT1-210ENST00000583780 TEN1Q86WV5 123 aa11.29□□□□□ -0.6
SHMT1-210ENST00000583780 ANKRD29Q8N6D5 301 aa11.25□□□□□ -0.61
SHMT1-210ENST00000583780 SS18L2Q9UHA2 77 aa11.25□□□□□ -0.61
SHMT1-210ENST00000583780 A0A087WSZ3 146 aa11.24□□□□□ -0.61
SHMT1-210ENST00000583780 UBE2V1Q13404 147 aa11.24□□□□□ -0.61
SHMT1-210ENST00000583780 A0A1W2PNM2 257 aa11.22□□□□□ -0.61
SHMT1-210ENST00000583780 ATXN8Q156A1 80 aa11.22□□□□□ -0.61
SHMT1-210ENST00000583780 FCGBPQ9Y6R7 5405 aaPredicted RBP11.2□□□□□ -0.62
SHMT1-210ENST00000583780 BAALC-AS2P0C853 105 aa11.2□□□□□ -0.62
SHMT1-210ENST00000583780 LYRM7Q5U5X0 104 aa11.18□□□□□ -0.62
SHMT1-210ENST00000583780 ATP11AUNQ6ZP68 121 aa11.18□□□□□ -0.62
SHMT1-210ENST00000583780 Q75L30 129 aa11.17□□□□□ -0.62
SHMT1-210ENST00000583780 CCKP06307 115 aa11.16□□□□□ -0.62
SHMT1-210ENST00000583780 TRBV7-4A0A0J9YYF1 115 aa11.15□□□□□ -0.62
SHMT1-210ENST00000583780 RBM3P98179 157 aaKnown RBP11.15□□□□□ -0.62
SHMT1-210ENST00000583780 VPS25Q9BRG1 176 aa11.14□□□□□ -0.63
SHMT1-210ENST00000583780 KRTAP19-1Q8IUB9 90 aa11.13□□□□□ -0.63
SHMT1-210ENST00000583780 OBSCN-AS1Q96MR7 158 aa11.12□□□□□ -0.63
SHMT1-210ENST00000583780 DSCR8Q96T75 97 aa11.12□□□□□ -0.63
SHMT1-210ENST00000583780 LCE2BO14633 110 aa11.11□□□□□ -0.63
SHMT1-210ENST00000583780 C9orf118A6NHY6 69 aa11.1□□□□□ -0.63
SHMT1-210ENST00000583780 TAX1BP3O14907 124 aa11.1□□□□□ -0.63
SHMT1-210ENST00000583780 Q96NJ1 140 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms