RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 PLAC8Q9NZF1 115 aa2.73□□□□□ -1.97
SS18-223ENST00000583595 MINOS1-NBL1R4GNA1 71 aa2.73□□□□□ -1.97
SS18-223ENST00000583595 CREBBPQ92793 2442 aa2.72□□□□□ -1.97
SS18-223ENST00000583595 ABCA12Q86UK0 2595 aa2.72□□□□□ -1.97
SS18-223ENST00000583595 CADP27708 2225 aa2.72□□□□□ -1.97
SS18-223ENST00000583595 KRTAP10-8P60410 259 aa2.72□□□□□ -1.97
SS18-223ENST00000583595 LY6EQ16553 131 aa2.72□□□□□ -1.97
SS18-223ENST00000583595 Q6ZQY7 126 aa2.72□□□□□ -1.97
SS18-223ENST00000583595 Q8IZM0 81 aa2.72□□□□□ -1.97
SS18-223ENST00000583595 COL12A1Q99715 3063 aa2.72□□□□□ -1.97
SS18-223ENST00000583595 RHPN1-AS1Q9BWJ2 59 aa2.72□□□□□ -1.97
SS18-223ENST00000583595 KCNQ1DNQ9H478 68 aa2.72□□□□□ -1.97
SS18-223ENST00000583595 RELNP78509 3460 aa2.72□□□□□ -1.97
SS18-223ENST00000583595 H3BUA1 57 aa2.71□□□□□ -1.98
SS18-223ENST00000583595 CNBPP62633 177 aaKnown RBP2.71□□□□□ -1.98
SS18-223ENST00000583595 KRTAP13-2Q52LG2 175 aa2.71□□□□□ -1.98
SS18-223ENST00000583595 USMG5Q96IX5 58 aa2.71□□□□□ -1.98
SS18-223ENST00000583595 XAGE1AQ9HD64 81 aa2.71□□□□□ -1.98
SS18-223ENST00000583595 MED13Q9UHV7 2174 aa2.71□□□□□ -1.98
SS18-223ENST00000583595 UTP20O75691 2785 aaKnown RBP2.71□□□□□ -1.98
SS18-223ENST00000583595 ANKRD17O75179 2603 aaKnown RBP2.71□□□□□ -1.98
SS18-223ENST00000583595 ICE1Q9Y2F5 2266 aa2.7□□□□□ -1.98
SS18-223ENST00000583595 NBPF19A0A087WUL8 3843 aa2.7□□□□□ -1.98
SS18-223ENST00000583595 SPAG11BQ08648 103 aa2.7□□□□□ -1.98
SS18-223ENST00000583595 RETNLBQ9BQ08 111 aa2.7□□□□□ -1.98
SS18-223ENST00000583595 FAM215AQ9Y5M1 114 aa2.7□□□□□ -1.98
SS18-223ENST00000583595 SPENQ96T58 3664 aaKnown RBP2.7□□□□□ -1.98
SS18-223ENST00000583595 CENPEQ02224 2701 aa2.7□□□□□ -1.98
SS18-223ENST00000583595 G3V318 75 aa2.69□□□□□ -1.98
SS18-223ENST00000583595 IGLV6-57P01721 117 aa2.69□□□□□ -1.98
SS18-223ENST00000583595 SPINK13Q1W4C9 94 aa2.69□□□□□ -1.98
SS18-223ENST00000583595 COA5Q86WW8 74 aa2.69□□□□□ -1.98
SS18-223ENST00000583595 TEP1Q99973 2627 aaKnown RBP2.69□□□□□ -1.98
SS18-223ENST00000583595 ITPR2Q14571 2701 aa2.68□□□□□ -1.98
SS18-223ENST00000583595 IGKV3-7A0A075B6H7 116 aa2.68□□□□□ -1.98
SS18-223ENST00000583595 A8MTW9 85 aa2.68□□□□□ -1.98
SS18-223ENST00000583595 IGLV1-51P01701 117 aa2.68□□□□□ -1.98
SS18-223ENST00000583595 PRB2P02812 416 aaPredicted RBP2.68□□□□□ -1.98
SS18-223ENST00000583595 CNTRLQ7Z7A1 2325 aa2.68□□□□□ -1.98
SS18-223ENST00000583595 LRBAP50851 2863 aa2.67□□□□□ -1.98
SS18-223ENST00000583595 HIVEP3Q5T1R4 2406 aa2.67□□□□□ -1.98
SS18-223ENST00000583595 TRGV4A0A0C4DH28 118 aa2.67□□□□□ -1.98
SS18-223ENST00000583595 RTL8CO15255 209 aa2.67□□□□□ -1.98
SS18-223ENST00000583595 SPINK7P58062 85 aa2.67□□□□□ -1.98
SS18-223ENST00000583595 C9orf163Q8N9P6 203 aa2.67□□□□□ -1.98
SS18-223ENST00000583595 PRRC2CQ9Y520 2896 aaKnown RBP2.67□□□□□ -1.98
SS18-223ENST00000583595 CCDC168Q8NDH2 2452 aa2.67□□□□□ -1.98
SS18-223ENST00000583595 C2CD3Q4AC94 2353 aa2.67□□□□□ -1.98
SS18-223ENST00000583595 CSMD1Q96PZ7 3565 aa2.66□□□□□ -1.98
SS18-223ENST00000583595 OTOGQ6ZRI0 2925 aa2.66□□□□□ -1.98
SS18-223ENST00000583595 ZFHX3Q15911 3703 aa2.66□□□□□ -1.98
SS18-223ENST00000583595 LINC00959A0A1B0GUT2 108 aa2.66□□□□□ -1.98
SS18-223ENST00000583595 A0A1W2PNM2 257 aa2.66□□□□□ -1.98
SS18-223ENST00000583595 B4DSR2 109 aa2.66□□□□□ -1.98
SS18-223ENST00000583595 H0Y9P7 68 aa2.66□□□□□ -1.98
SS18-223ENST00000583595 C5orf56Q8N8D9 126 aa2.66□□□□□ -1.98
SS18-223ENST00000583595 F8P00451 2351 aa2.66□□□□□ -1.98
SS18-223ENST00000583595 ABCA1O95477 2261 aa2.66□□□□□ -1.98
SS18-223ENST00000583595 MTORP42345 2549 aa2.66□□□□□ -1.98
SS18-223ENST00000583595 FBN2P35556 2912 aa2.65□□□□□ -1.98
SS18-223ENST00000583595 POLQO75417 2590 aa2.65□□□□□ -1.98
SS18-223ENST00000583595 CELSR2Q9HCU4 2923 aa2.65□□□□□ -1.99
SS18-223ENST00000583595 IGLV5-48A0A075B6I7 105 aa2.65□□□□□ -1.99
SS18-223ENST00000583595 A0A1W2PNN7 141 aa2.65□□□□□ -1.99
SS18-223ENST00000583595 KRTAP5-8O75690 187 aa2.65□□□□□ -1.99
SS18-223ENST00000583595 MSMBP08118 114 aa2.65□□□□□ -1.99
SS18-223ENST00000583595 DEFB112Q30KQ8 113 aa2.65□□□□□ -1.99
SS18-223ENST00000583595 SPAG11AQ6PDA7 123 aa2.65□□□□□ -1.99
SS18-223ENST00000583595 IGFL1Q6UW32 110 aa2.65□□□□□ -1.99
SS18-223ENST00000583595 APCP25054 2843 aa2.64□□□□□ -1.99
SS18-223ENST00000583595 IGKV3OR2-268A0A0C4DH90 116 aa2.64□□□□□ -1.99
SS18-223ENST00000583595 HTN1P15515 57 aa2.64□□□□□ -1.99
SS18-223ENST00000583595 KRTAP21-3Q3LHN1 58 aa2.64□□□□□ -1.99
SS18-223ENST00000583595 SPRR4Q96PI1 79 aa2.64□□□□□ -1.99
SS18-223ENST00000583595 SETD2Q9BYW2 2564 aaPredicted RBP2.63□□□□□ -1.99
SS18-223ENST00000583595 NF1P21359 2839 aa2.63□□□□□ -1.99
SS18-223ENST00000583595 DNAJC13O75165 2243 aa2.63□□□□□ -1.99
SS18-223ENST00000583595 K7EQZ3 153 aa2.63□□□□□ -1.99
SS18-223ENST00000583595 C1orf134Q5TEV5 83 aa2.63□□□□□ -1.99
SS18-223ENST00000583595 Q8NDZ9 215 aa2.63□□□□□ -1.99
SS18-223ENST00000583595 HIVEP1P15822 2718 aa2.63□□□□□ -1.99
SS18-223ENST00000583595 CRYBG3Q68DQ2 2970 aa2.63□□□□□ -1.99
SS18-223ENST00000583595 ABCA2Q9BZC7 2435 aa2.62□□□□□ -1.99
SS18-223ENST00000583595 AKAP9Q99996 3911 aa2.62□□□□□ -1.99
SS18-223ENST00000583595 GVQW2A0A096LPI5 108 aaPredicted RBP2.62□□□□□ -1.99
SS18-223ENST00000583595 TRGV1A0A0A0MS02 117 aa2.62□□□□□ -1.99
SS18-223ENST00000583595 CSAG1Q6PB30 78 aa2.62□□□□□ -1.99
SS18-223ENST00000583595 SPATA8Q6RVD6 105 aa2.62□□□□□ -1.99
SS18-223ENST00000583595 PDZD2O15018 2839 aa2.62□□□□□ -1.99
SS18-223ENST00000583595 PKDREJQ9NTG1 2253 aa2.62□□□□□ -1.99
SS18-223ENST00000583595 ADGRG4Q8IZF6 3080 aa2.62□□□□□ -1.99
SS18-223ENST00000583595 ITPR3Q14573 2671 aa2.61□□□□□ -1.99
SS18-223ENST00000583595 DNHD1Q96M86 4753 aa2.61□□□□□ -1.99
SS18-223ENST00000583595 LYNX1G3V0Z9 82 aa2.61□□□□□ -1.99
SS18-223ENST00000583595 LYNX1P0DP58 116 aa2.61□□□□□ -1.99
SS18-223ENST00000583595 ROMO1P60602 79 aa2.61□□□□□ -1.99
SS18-223ENST00000583595 DEFB113Q30KQ7 82 aa2.61□□□□□ -1.99
SS18-223ENST00000583595 SPG11Q96JI7 2443 aa2.6□□□□□ -1.99
SS18-223ENST00000583595 CELSR1Q9NYQ6 3014 aa2.6□□□□□ -1.99
SS18-223ENST00000583595 ANKHD1Q8IWZ3 2542 aaKnown RBP2.6□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms