RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 Q96NJ1 140 aa6.41□□□□□ -1.38
SS18-219ENST00000581570 E9PLD3 99 aa6.4□□□□□ -1.38
SS18-219ENST00000581570 TIMM17BO60830 172 aa6.39□□□□□ -1.39
SS18-219ENST00000581570 KRTAP19-6Q3LI70 58 aa6.39□□□□□ -1.39
SS18-219ENST00000581570 F8WEM9 126 aa6.38□□□□□ -1.39
SS18-219ENST00000581570 KRTAP4-9Q9BYQ8 210 aa6.38□□□□□ -1.39
SS18-219ENST00000581570 HSPB8Q9UJY1 196 aa6.38□□□□□ -1.39
SS18-219ENST00000581570 TRBV7-7A0A0K0K1E9 115 aa6.37□□□□□ -1.39
SS18-219ENST00000581570 FAM236DA0A1B0GTK5 79 aa6.37□□□□□ -1.39
SS18-219ENST00000581570 FAM236CP0DP71 79 aa6.37□□□□□ -1.39
SS18-219ENST00000581570 FABP4P15090 132 aa6.37□□□□□ -1.39
SS18-219ENST00000581570 KRTAP6-3Q3LI67 103 aa6.37□□□□□ -1.39
SS18-219ENST00000581570 C20orf166-AS1Q96NR2 134 aa6.36□□□□□ -1.39
SS18-219ENST00000581570 A4D1N5 150 aa6.35□□□□□ -1.39
SS18-219ENST00000581570 IGFL1Q6UW32 110 aa6.35□□□□□ -1.39
SS18-219ENST00000581570 NHP2Q9NX24 153 aaKnown RBP6.35□□□□□ -1.39
SS18-219ENST00000581570 A8MUU9 505 aa6.34□□□□□ -1.39
SS18-219ENST00000581570 SERF1AO75920 110 aa6.34□□□□□ -1.39
SS18-219ENST00000581570 Q6JHZ5 121 aa6.34□□□□□ -1.39
SS18-219ENST00000581570 A6NDN8 102 aa6.33□□□□□ -1.4
SS18-219ENST00000581570 CLEC2BQ92478 149 aa6.33□□□□□ -1.4
SS18-219ENST00000581570 YPEL4Q96NS1 127 aa6.33□□□□□ -1.4
SS18-219ENST00000581570 ZNF815PA8K554 130 aa6.32□□□□□ -1.4
SS18-219ENST00000581570 LST1O00453 97 aa6.32□□□□□ -1.4
SS18-219ENST00000581570 APOC3P02656 99 aa6.32□□□□□ -1.4
SS18-219ENST00000581570 SNAPINO95295 136 aa6.31□□□□□ -1.4
SS18-219ENST00000581570 SLC7A5P1Q8MH63 180 aa6.3□□□□□ -1.4
SS18-219ENST00000581570 KRTAP3-1Q9BYR8 98 aa6.3□□□□□ -1.4
SS18-219ENST00000581570 TRAV13-2A0A0B4J235 113 aa6.29□□□□□ -1.4
SS18-219ENST00000581570 LCE5AQ5TCM9 118 aa6.29□□□□□ -1.4
SS18-219ENST00000581570 RBM12B-AS1Q9P1G2 102 aa6.29□□□□□ -1.4
SS18-219ENST00000581570 TRGC2P03986 189 aa6.28□□□□□ -1.4
SS18-219ENST00000581570 OCIAD2Q56VL3 154 aa6.28□□□□□ -1.4
SS18-219ENST00000581570 SVBPQ8N300 66 aa6.28□□□□□ -1.4
SS18-219ENST00000581570 TTTY13Q9BZ97 58 aa6.28□□□□□ -1.4
SS18-219ENST00000581570 SMIM11BQ8TCY0 68 aa6.27□□□□□ -1.41
SS18-219ENST00000581570 KRTAP16-1A8MUX0 517 aa6.26□□□□□ -1.41
SS18-219ENST00000581570 NDUFA5Q16718 116 aa6.26□□□□□ -1.41
SS18-219ENST00000581570 MPLKIPQ8TAP9 179 aa6.26□□□□□ -1.41
SS18-219ENST00000581570 COPS9Q8WXC6 57 aa6.26□□□□□ -1.41
SS18-219ENST00000581570 IFITM1P13164 125 aa6.25□□□□□ -1.41
SS18-219ENST00000581570 HRES1P13985 223 aa6.24□□□□□ -1.41
SS18-219ENST00000581570 LINC00575Q6W349 94 aa6.24□□□□□ -1.41
SS18-219ENST00000581570 SCGB1D4Q6XE38 83 aa6.24□□□□□ -1.41
SS18-219ENST00000581570 Q6ZQY7 126 aa6.24□□□□□ -1.41
SS18-219ENST00000581570 SYS1-DBNDD2H3BUS1 97 aa6.23□□□□□ -1.41
SS18-219ENST00000581570 VAMP3Q15836 100 aa6.23□□□□□ -1.41
SS18-219ENST00000581570 hADV29S1A0JD25 119 aa6.22□□□□□ -1.41
SS18-219ENST00000581570 DSCR10P59022 87 aa6.22□□□□□ -1.41
SS18-219ENST00000581570 MUSTN1Q8IVN3 82 aa6.22□□□□□ -1.41
SS18-219ENST00000581570 SS18L2Q9UHA2 77 aa6.22□□□□□ -1.41
SS18-219ENST00000581570 LINC01545Q5VT33 79 aa6.2□□□□□ -1.42
SS18-219ENST00000581570 Q6ZVH6 145 aa6.2□□□□□ -1.42
SS18-219ENST00000581570 H3BUT2 72 aa6.19□□□□□ -1.42
SS18-219ENST00000581570 SNHG12Q9BXW3 62 aa6.19□□□□□ -1.42
SS18-219ENST00000581570 KRTAP4-11Q9BYQ6 195 aa6.19□□□□□ -1.42
SS18-219ENST00000581570 NOTCH2NLQ7Z3S9 236 aa6.18□□□□□ -1.42
SS18-219ENST00000581570 SCGB1D1O95968 90 aa6.17□□□□□ -1.42
SS18-219ENST00000581570 PET117Q6UWS5 81 aa6.17□□□□□ -1.42
SS18-219ENST00000581570 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.16□□□□□ -1.42
SS18-219ENST00000581570 MTURNQ8N3F0 131 aa6.16□□□□□ -1.42
SS18-219ENST00000581570 PPDPFLQ8WWR9 84 aa6.16□□□□□ -1.42
SS18-219ENST00000581570 KRTAP4-2Q9BYR5 136 aa6.16□□□□□ -1.42
SS18-219ENST00000581570 NEBP20929 6669 aa6.15□□□□□ -1.42
SS18-219ENST00000581570 LINC00313P59037 77 aa6.14□□□□□ -1.43
SS18-219ENST00000581570 TEN1Q86WV5 123 aa6.14□□□□□ -1.43
SS18-219ENST00000581570 A0A087WSZ3 146 aa6.13□□□□□ -1.43
SS18-219ENST00000581570 KRTAP23-1A1A580 65 aa6.12□□□□□ -1.43
SS18-219ENST00000581570 COLCA2A8K830 154 aa6.12□□□□□ -1.43
SS18-219ENST00000581570 A8MWP4 228 aa6.12□□□□□ -1.43
SS18-219ENST00000581570 KRTAP20-1Q3LI63 56 aa6.12□□□□□ -1.43
SS18-219ENST00000581570 Q8N9P0 234 aaPredicted RBP6.12□□□□□ -1.43
SS18-219ENST00000581570 SIGMAR1Q99720 223 aa6.12□□□□□ -1.43
SS18-219ENST00000581570 MUC12Q9UKN1 5478 aa6.09□□□□□ -1.43
SS18-219ENST00000581570 C3orf79P0CE67 100 aa6.09□□□□□ -1.43
SS18-219ENST00000581570 IGKV4-1P06312 121 aa6.06□□□□□ -1.44
SS18-219ENST00000581570 BVES-AS1Q5T3Y7 98 aa6.06□□□□□ -1.44
SS18-219ENST00000581570 NDUFV3P56181 108 aaKnown RBP6.05□□□□□ -1.44
SS18-219ENST00000581570 KRTDAPP60985 99 aa6.05□□□□□ -1.44
SS18-219ENST00000581570 C12orf57Q99622 126 aa6.05□□□□□ -1.44
SS18-219ENST00000581570 ATOH7Q8N100 152 aa6.03□□□□□ -1.44
SS18-219ENST00000581570 HIST1H2BKO60814 126 aa6.02□□□□□ -1.45
SS18-219ENST00000581570 HIST1H2BJP06899 126 aa6.02□□□□□ -1.45
SS18-219ENST00000581570 HIST1H2BOP23527 126 aa6.02□□□□□ -1.45
SS18-219ENST00000581570 HIST1H2BBP33778 126 aa6.02□□□□□ -1.45
SS18-219ENST00000581570 HIST1H2BDP58876 126 aa6.02□□□□□ -1.45
SS18-219ENST00000581570 HIST1H2BCP62807 126 aa6.02□□□□□ -1.45
SS18-219ENST00000581570 HIST2H2BEQ16778 126 aa6.02□□□□□ -1.45
SS18-219ENST00000581570 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.02□□□□□ -1.45
SS18-219ENST00000581570 HIST1H2BHQ93079 126 aa6.02□□□□□ -1.45
SS18-219ENST00000581570 HIST1H2BNQ99877 126 aa6.02□□□□□ -1.45
SS18-219ENST00000581570 HIST1H2BMQ99879 126 aa6.02□□□□□ -1.45
SS18-219ENST00000581570 H3BMG7 143 aa6.01□□□□□ -1.45
SS18-219ENST00000581570 SPINK7P58062 85 aa6.01□□□□□ -1.45
SS18-219ENST00000581570 A0A1W2PNM2 257 aa6□□□□□ -1.45
SS18-219ENST00000581570 IGHV6-1A0A0B4J1U7 121 aa5.99□□□□□ -1.45
SS18-219ENST00000581570 SNCGO76070 127 aa5.99□□□□□ -1.45
SS18-219ENST00000581570 DEFB116Q30KQ4 102 aa5.99□□□□□ -1.45
SS18-219ENST00000581570 ZCCHC13Q8WW36 166 aaKnown RBP5.97□□□□□ -1.45
SS18-219ENST00000581570 FABP2P12104 132 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 139.2 ms