RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 PPYP01298 95 aa2.65□□□□□ -1.99
VPS53-219ENST00000576019 APOC3P02656 99 aa2.65□□□□□ -1.99
VPS53-219ENST00000576019 UBE2G1P62253 170 aa2.65□□□□□ -1.99
VPS53-219ENST00000576019 ZNF625Q96I27 306 aaPredicted RBP2.65□□□□□ -1.99
VPS53-219ENST00000576019 TMEM141Q96I45 108 aa2.65□□□□□ -1.99
VPS53-219ENST00000576019 C20orf78Q9BR46 151 aa2.65□□□□□ -1.99
VPS53-219ENST00000576019 SMCO4Q9NRQ5 59 aa2.65□□□□□ -1.99
VPS53-219ENST00000576019 FAM223BA6NKX1 122 aa2.64□□□□□ -1.99
VPS53-219ENST00000576019 PDCD5O14737 125 aa2.64□□□□□ -1.99
VPS53-219ENST00000576019 CCKP06307 115 aa2.64□□□□□ -1.99
VPS53-219ENST00000576019 FAM223AQ8IWN6 122 aa2.64□□□□□ -1.99
VPS53-219ENST00000576019 PPDPFLQ8WWR9 84 aa2.64□□□□□ -1.99
VPS53-219ENST00000576019 KRTAP4-4Q9BYR3 166 aa2.64□□□□□ -1.99
VPS53-219ENST00000576019 ZNF137PP52743 207 aa2.63□□□□□ -1.99
VPS53-219ENST00000576019 MPV17LQ2QL34 196 aa2.63□□□□□ -1.99
VPS53-219ENST00000576019 RPL7L1Q6DKI1 246 aaKnown RBP2.63□□□□□ -1.99
VPS53-219ENST00000576019 PMCHL2Q9BQD1 86 aa2.63□□□□□ -1.99
VPS53-219ENST00000576019 MRPL36Q9P0J6 103 aaKnown RBP2.63□□□□□ -1.99
VPS53-219ENST00000576019 DSTQ03001 7570 aaKnown RBP2.62□□□□□ -1.99
VPS53-219ENST00000576019 hADV29S1A0JD25 119 aa2.62□□□□□ -1.99
VPS53-219ENST00000576019 A6NIN4 97 aa2.62□□□□□ -1.99
VPS53-219ENST00000576019 JMJD7-PLA2G4BH0Y9G9 81 aa2.62□□□□□ -1.99
VPS53-219ENST00000576019 H3BNG1 76 aa2.62□□□□□ -1.99
VPS53-219ENST00000576019 DEFB131AP59861 70 aa2.62□□□□□ -1.99
VPS53-219ENST00000576019 RBM3P98179 157 aaKnown RBP2.62□□□□□ -1.99
VPS53-219ENST00000576019 KRTAP13-4Q3LI77 160 aa2.62□□□□□ -1.99
VPS53-219ENST00000576019 S100A16Q96FQ6 103 aaKnown RBP2.62□□□□□ -1.99
VPS53-219ENST00000576019 LCE3DQ9BYE3 92 aa2.62□□□□□ -1.99
VPS53-219ENST00000576019 RABAC1Q9UI14 185 aa2.62□□□□□ -1.99
VPS53-219ENST00000576019 TRAV23DV6A0A075B6W5 121 aa2.61□□□□□ -1.99
VPS53-219ENST00000576019 A0A0J9YY99 117 aa2.61□□□□□ -1.99
VPS53-219ENST00000576019 MRPL35Q9NZE8 188 aaKnown RBP2.61□□□□□ -1.99
VPS53-219ENST00000576019 TMEM14CQ9P0S9 112 aa2.61□□□□□ -1.99
VPS53-219ENST00000576019 HMCN1Q96RW7 5635 aa2.61□□□□□ -1.99
VPS53-219ENST00000576019 ATOX1O00244 68 aa2.6□□□□□ -1.99
VPS53-219ENST00000576019 DEFB130BP0DP73 79 aa2.6□□□□□ -1.99
VPS53-219ENST00000576019 DEFB130AP0DP74 79 aa2.6□□□□□ -1.99
VPS53-219ENST00000576019 PLGLAQ15195 96 aa2.6□□□□□ -1.99
VPS53-219ENST00000576019 C9orf116Q5BN46 136 aaPredicted RBP2.6□□□□□ -1.99
VPS53-219ENST00000576019 SPTSSBQ8NFR3 76 aa2.6□□□□□ -1.99
VPS53-219ENST00000576019 PIGBOS1A0A0B4J2F0 54 aa2.59□□□□□ -1.99
VPS53-219ENST00000576019 RPL38P63173 70 aaKnown RBP2.59□□□□□ -1.99
VPS53-219ENST00000576019 FXYD3Q14802 87 aa2.59□□□□□ -1.99
VPS53-219ENST00000576019 ST20Q9HBF5 79 aa2.59□□□□□ -1.99
VPS53-219ENST00000576019 LINC00474Q9P2X8 69 aa2.59□□□□□ -1.99
VPS53-219ENST00000576019 SNURFQ9Y675 71 aa2.59□□□□□ -1.99
VPS53-219ENST00000576019 IGKV3-7A0A075B6H7 116 aa2.58□□□□□ -2
VPS53-219ENST00000576019 A0A096LPF7 62 aa2.58□□□□□ -2
VPS53-219ENST00000576019 SEC11AP67812 179 aa2.58□□□□□ -2
VPS53-219ENST00000576019 ADIRFQ15847 76 aa2.58□□□□□ -2
VPS53-219ENST00000576019 S100ZQ8WXG8 99 aa2.58□□□□□ -2
VPS53-219ENST00000576019 IFI27L1Q96BM0 104 aa2.58□□□□□ -2
VPS53-219ENST00000576019 ODF3Q96PU9 254 aa2.58□□□□□ -2
VPS53-219ENST00000576019 AHNAKQ09666 5890 aaKnown RBP2.57□□□□□ -2
VPS53-219ENST00000576019 INE1O15225 51 aa2.57□□□□□ -2
VPS53-219ENST00000576019 PRH1P02810 166 aa2.57□□□□□ -2
VPS53-219ENST00000576019 IGLC2P0DOY2 106 aa2.57□□□□□ -2
VPS53-219ENST00000576019 IGLC3P0DOY3 106 aa2.57□□□□□ -2
VPS53-219ENST00000576019 SPRR2EP22531 72 aa2.57□□□□□ -2
VPS53-219ENST00000576019 SPRR2BP35325 72 aa2.57□□□□□ -2
VPS53-219ENST00000576019 SPRR2AP35326 72 aa2.57□□□□□ -2
VPS53-219ENST00000576019 FAUP35544 74 aaKnown RBP2.57□□□□□ -2
VPS53-219ENST00000576019 KRTDAPP60985 99 aa2.57□□□□□ -2
VPS53-219ENST00000576019 SERP2Q8N6R1 65 aa2.57□□□□□ -2
VPS53-219ENST00000576019 DMAC1Q96GE9 116 aa2.57□□□□□ -2
VPS53-219ENST00000576019 MGST2Q99735 147 aa2.57□□□□□ -2
VPS53-219ENST00000576019 CACFD1Q9UGQ2 172 aa2.57□□□□□ -2
VPS53-219ENST00000576019 SPCS1Q9Y6A9 102 aa2.57□□□□□ -2
VPS53-219ENST00000576019 TRBV10-1A0A0K0K1A3 114 aa2.56□□□□□ -2
VPS53-219ENST00000576019 CFDP00746 253 aaPredicted RBP2.56□□□□□ -2
VPS53-219ENST00000576019 IGHV3-30P01768 117 aa2.56□□□□□ -2
VPS53-219ENST00000576019 IGHV3-30-5P0DP03 117 aa2.56□□□□□ -2
VPS53-219ENST00000576019 PDE6GP18545 87 aa2.56□□□□□ -2
VPS53-219ENST00000576019 KRTAP10-10P60014 251 aa2.56□□□□□ -2
VPS53-219ENST00000576019 FAM213BQ8TBF2 198 aa2.56□□□□□ -2
VPS53-219ENST00000576019 A0A1W2PPM0 123 aa2.55□□□□□ -2
VPS53-219ENST00000576019 BVES-AS1Q5T3Y7 98 aa2.55□□□□□ -2
VPS53-219ENST00000576019 WFDC10BQ8IUB3 73 aa2.55□□□□□ -2
VPS53-219ENST00000576019 TRGV9Q99603 122 aa2.55□□□□□ -2
VPS53-219ENST00000576019 CYSTM1Q9H1C7 97 aa2.55□□□□□ -2
VPS53-219ENST00000576019 C22orf24Q9Y442 160 aa2.55□□□□□ -2
VPS53-219ENST00000576019 LOC110117498A0A087WWA1 95 aa2.54□□□□□ -2
VPS53-219ENST00000576019 NAP1L6A6NFF2 107 aa2.54□□□□□ -2
VPS53-219ENST00000576019 APELAP0DMC3 54 aa2.54□□□□□ -2
VPS53-219ENST00000576019 GNG11P61952 73 aa2.54□□□□□ -2
VPS53-219ENST00000576019 ETDBQ3ZM63 59 aa2.54□□□□□ -2
VPS53-219ENST00000576019 PCOTHQ58A44 107 aa2.54□□□□□ -2
VPS53-219ENST00000576019 NMSQ5H8A3 153 aa2.54□□□□□ -2
VPS53-219ENST00000576019 CYP4F30PQ9H0H9 118 aa2.54□□□□□ -2
VPS53-219ENST00000576019 TRAV12-3A0A0B4J271 114 aa2.53□□□□□ -2
VPS53-219ENST00000576019 HCG22E2RYF7 251 aa2.53□□□□□ -2
VPS53-219ENST00000576019 SYS1-DBNDD2H3BUS1 97 aa2.53□□□□□ -2
VPS53-219ENST00000576019 RHPN1-AS1Q9BWJ2 59 aa2.53□□□□□ -2
VPS53-219ENST00000576019 TRBV6-7A0A0A0MS04 114 aa2.52□□□□□ -2.01
VPS53-219ENST00000576019 TRAV13-2A0A0B4J235 113 aa2.52□□□□□ -2.01
VPS53-219ENST00000576019 TRBV10-3A0A0K0K1G6 114 aa2.52□□□□□ -2.01
VPS53-219ENST00000576019 NDUFC1O43677 76 aa2.52□□□□□ -2.01
VPS53-219ENST00000576019 KRTAP12-1P59990 96 aa2.52□□□□□ -2.01
VPS53-219ENST00000576019 SPATA45Q537H7 98 aa2.52□□□□□ -2.01
VPS53-219ENST00000576019 CPSF4LA6NMK7 179 aaKnown RBP2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 296.7 ms