RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 C9orf118A6NHY6 69 aa10.62□□□□□ -0.71
CCDC40-213ENST00000574933 PCP4L1A6NKN8 68 aa10.62□□□□□ -0.71
CCDC40-213ENST00000574933 LST1O00453 97 aa10.62□□□□□ -0.71
CCDC40-213ENST00000574933 TRACP01848 142 aa10.62□□□□□ -0.71
CCDC40-213ENST00000574933 IGLV9-49A0A0B4J1Y8 123 aa10.61□□□□□ -0.71
CCDC40-213ENST00000574933 NAA38Q9BRA0 125 aaKnown RBP10.61□□□□□ -0.71
CCDC40-213ENST00000574933 GHRHP01286 108 aa10.6□□□□□ -0.71
CCDC40-213ENST00000574933 MOBPQ13875 183 aa10.6□□□□□ -0.71
CCDC40-213ENST00000574933 Q8NBF4 154 aa10.6□□□□□ -0.71
CCDC40-213ENST00000574933 H3BUT2 72 aa10.59□□□□□ -0.71
CCDC40-213ENST00000574933 COL5A1-AS1Q5SY13 56 aa10.59□□□□□ -0.71
CCDC40-213ENST00000574933 LYRM7Q5U5X0 104 aa10.59□□□□□ -0.71
CCDC40-213ENST00000574933 DNAL4O96015 105 aa10.58□□□□□ -0.72
CCDC40-213ENST00000574933 H3BQ85 93 aa10.57□□□□□ -0.72
CCDC40-213ENST00000574933 LINC00304Q8N9R0 145 aa10.57□□□□□ -0.72
CCDC40-213ENST00000574933 TCL1BO95988 128 aa10.56□□□□□ -0.72
CCDC40-213ENST00000574933 C9orf153Q5TBE3 101 aa10.56□□□□□ -0.72
CCDC40-213ENST00000574933 ORMDL1Q9P0S3 153 aa10.56□□□□□ -0.72
CCDC40-213ENST00000574933 IGLV8-61A0A075B6I0 122 aa10.55□□□□□ -0.72
CCDC40-213ENST00000574933 SPAG11AQ6PDA7 123 aa10.55□□□□□ -0.72
CCDC40-213ENST00000574933 TRBV20-1A0A075B6N2 111 aa10.54□□□□□ -0.72
CCDC40-213ENST00000574933 ATXN8Q156A1 80 aa10.54□□□□□ -0.72
CCDC40-213ENST00000574933 A0A1W2PPM0 123 aa10.53□□□□□ -0.72
CCDC40-213ENST00000574933 F8WEM9 126 aa10.52□□□□□ -0.73
CCDC40-213ENST00000574933 TMEM256-PLSCR3K7ERE1 68 aa10.51□□□□□ -0.73
CCDC40-213ENST00000574933 NDUFV3P56181 108 aaKnown RBP10.5□□□□□ -0.73
CCDC40-213ENST00000574933 FABP2P12104 132 aa10.49□□□□□ -0.73
CCDC40-213ENST00000574933 Q6JHZ5 121 aa10.49□□□□□ -0.73
CCDC40-213ENST00000574933 SPINK1P00995 79 aa10.48□□□□□ -0.73
CCDC40-213ENST00000574933 RPS29P62273 56 aaKnown RBP10.48□□□□□ -0.73
CCDC40-213ENST00000574933 UBE2V1Q13404 147 aa10.48□□□□□ -0.73
CCDC40-213ENST00000574933 C4orf48Q5BLP8 95 aa10.48□□□□□ -0.73
CCDC40-213ENST00000574933 CD164Q04900 197 aa10.47□□□□□ -0.73
CCDC40-213ENST00000574933 BAALC-AS2P0C853 105 aa10.45□□□□□ -0.74
CCDC40-213ENST00000574933 HERC1Q15751 4861 aa10.44□□□□□ -0.74
CCDC40-213ENST00000574933 IGFL1Q6UW32 110 aa10.43□□□□□ -0.74
CCDC40-213ENST00000574933 H3BMG7 143 aa10.42□□□□□ -0.74
CCDC40-213ENST00000574933 SPCS1Q9Y6A9 102 aa10.41□□□□□ -0.74
CCDC40-213ENST00000574933 A0A0G2JQZ4 141 aa10.4□□□□□ -0.74
CCDC40-213ENST00000574933 C9JAW5 83 aa10.39□□□□□ -0.75
CCDC40-213ENST00000574933 Q5XG85 94 aa10.38□□□□□ -0.75
CCDC40-213ENST00000574933 ANKRD29Q8N6D5 301 aa10.38□□□□□ -0.75
CCDC40-213ENST00000574933 H3BT86 120 aa10.36□□□□□ -0.75
CCDC40-213ENST00000574933 Q6Q795 121 aa10.36□□□□□ -0.75
CCDC40-213ENST00000574933 HRCT1Q6UXD1 115 aa10.36□□□□□ -0.75
CCDC40-213ENST00000574933 K7EP34 96 aa10.35□□□□□ -0.75
CCDC40-213ENST00000574933 LIMD2Q9BT23 127 aa10.35□□□□□ -0.75
CCDC40-213ENST00000574933 TRBV7-4A0A0J9YYF1 115 aa10.33□□□□□ -0.76
CCDC40-213ENST00000574933 RBM3P98179 157 aaKnown RBP10.33□□□□□ -0.76
CCDC40-213ENST00000574933 TRBV7-7A0A0K0K1E9 115 aa10.32□□□□□ -0.76
CCDC40-213ENST00000574933 JMJD7-PLA2G4BH0Y9G9 81 aa10.32□□□□□ -0.76
CCDC40-213ENST00000574933 TEN1Q86WV5 123 aa10.32□□□□□ -0.76
CCDC40-213ENST00000574933 A0A1W2PNM2 257 aa10.3□□□□□ -0.76
CCDC40-213ENST00000574933 OBSCN-AS1Q96MR7 158 aa10.3□□□□□ -0.76
CCDC40-213ENST00000574933 GTF2H5Q6ZYL4 71 aa10.29□□□□□ -0.76
CCDC40-213ENST00000574933 A0A1B0GV72 72 aa10.28□□□□□ -0.76
CCDC40-213ENST00000574933 FP248Q71RG6 208 aaPredicted RBP10.28□□□□□ -0.76
CCDC40-213ENST00000574933 MTURNQ8N3F0 131 aa10.28□□□□□ -0.76
CCDC40-213ENST00000574933 RETNLBQ9BQ08 111 aa10.28□□□□□ -0.76
CCDC40-213ENST00000574933 PRO0461Q9UI25 63 aa10.28□□□□□ -0.76
CCDC40-213ENST00000574933 ASB16-AS1Q495Z4 193 aa10.27□□□□□ -0.77
CCDC40-213ENST00000574933 DSCR8Q96T75 97 aa10.27□□□□□ -0.77
CCDC40-213ENST00000574933 SMCPP49901 116 aaPredicted RBP10.26□□□□□ -0.77
CCDC40-213ENST00000574933 PRR4Q16378 134 aa10.25□□□□□ -0.77
CCDC40-213ENST00000574933 LOC110117498A0A087WWA1 95 aa10.24□□□□□ -0.77
CCDC40-213ENST00000574933 CCKP06307 115 aa10.23□□□□□ -0.77
CCDC40-213ENST00000574933 PDE6GP18545 87 aa10.23□□□□□ -0.77
CCDC40-213ENST00000574933 C1orf195Q5TG92 126 aa10.22□□□□□ -0.77
CCDC40-213ENST00000574933 Q6ZQT0 140 aa10.22□□□□□ -0.77
CCDC40-213ENST00000574933 SS18L2Q9UHA2 77 aa10.22□□□□□ -0.77
CCDC40-213ENST00000574933 IGLV7-46A0A075B6I9 117 aa10.2□□□□□ -0.78
CCDC40-213ENST00000574933 A0A087WSZ3 146 aa10.2□□□□□ -0.78
CCDC40-213ENST00000574933 C21orf62-AS1Q17RA5 79 aa10.2□□□□□ -0.78
CCDC40-213ENST00000574933 HMCN2Q8NDA2 5059 aa10.2□□□□□ -0.78
CCDC40-213ENST00000574933 C14orf132Q9NPU4 83 aa10.19□□□□□ -0.78
CCDC40-213ENST00000574933 F8W1H4 67 aa10.18□□□□□ -0.78
CCDC40-213ENST00000574933 A0A1B0GW54 56 aa10.17□□□□□ -0.78
CCDC40-213ENST00000574933 TPRXLQ17RH7 258 aa10.16□□□□□ -0.78
CCDC40-213ENST00000574933 VPS25Q9BRG1 176 aa10.14□□□□□ -0.79
CCDC40-213ENST00000574933 Q96NJ1 140 aa10.12□□□□□ -0.79
CCDC40-213ENST00000574933 A0A1B0GV90 55 aa10.11□□□□□ -0.79
CCDC40-213ENST00000574933 KRTAP13-3Q3SY46 172 aa10.11□□□□□ -0.79
CCDC40-213ENST00000574933 LINC00472Q9H8W2 130 aa10.08□□□□□ -0.8
CCDC40-213ENST00000574933 LRP2P98164 4655 aa10.05□□□□□ -0.8
CCDC40-213ENST00000574933 ETDBQ3ZM63 59 aa10.05□□□□□ -0.8
CCDC40-213ENST00000574933 LPAP08519 4548 aa10.05□□□□□ -0.8
CCDC40-213ENST00000574933 CDIP1Q9H305 208 aa10□□□□□ -0.81
CCDC40-213ENST00000574933 IGKV4-1P06312 121 aa9.98□□□□□ -0.81
CCDC40-213ENST00000574933 J3KT08 172 aa9.96□□□□□ -0.82
CCDC40-213ENST00000574933 NREPQ16612 68 aa9.95□□□□□ -0.82
CCDC40-213ENST00000574933 SIGMAR1Q99720 223 aa9.95□□□□□ -0.82
CCDC40-213ENST00000574933 DEFB116Q30KQ4 102 aa9.94□□□□□ -0.82
CCDC40-213ENST00000574933 XP32Q5T750 250 aa9.94□□□□□ -0.82
CCDC40-213ENST00000574933 C9orf92A6NGG3 77 aa9.93□□□□□ -0.82
CCDC40-213ENST00000574933 LINC00846Q9NV44 126 aa9.89□□□□□ -0.83
CCDC40-213ENST00000574933 Q6ZVQ6 151 aa9.88□□□□□ -0.83
CCDC40-213ENST00000574933 A0A1B0GVX0 72 aa9.87□□□□□ -0.83
CCDC40-213ENST00000574933 A8MWP4 228 aa9.85□□□□□ -0.83
CCDC40-213ENST00000574933 NDUFB1O75438 58 aa9.84□□□□□ -0.83
CCDC40-213ENST00000574933 UBL5Q9BZL1 73 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms