RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 TAL2Q16559 108 aa6.03□□□□□ -1.44
VPS53-207ENST00000570510 C9orf92A6NGG3 77 aa6.02□□□□□ -1.45
VPS53-207ENST00000570510 VAMP8Q9BV40 100 aa6.02□□□□□ -1.45
VPS53-207ENST00000570510 TEX49A0A1B0GTD5 131 aa6.01□□□□□ -1.45
VPS53-207ENST00000570510 HIST1H4GQ99525 98 aa6.01□□□□□ -1.45
VPS53-207ENST00000570510 LAMTOR3Q9UHA4 124 aa6.01□□□□□ -1.45
VPS53-207ENST00000570510 IGLV5-48A0A075B6I7 105 aa6□□□□□ -1.45
VPS53-207ENST00000570510 BVES-AS1Q5T3Y7 98 aa6□□□□□ -1.45
VPS53-207ENST00000570510 CD164Q04900 197 aa5.99□□□□□ -1.45
VPS53-207ENST00000570510 SPATA45Q537H7 98 aa5.99□□□□□ -1.45
VPS53-207ENST00000570510 SMIM11BQ8TCY0 68 aa5.99□□□□□ -1.45
VPS53-207ENST00000570510 PPDPFLQ8WWR9 84 aa5.99□□□□□ -1.45
VPS53-207ENST00000570510 SNCGO76070 127 aa5.98□□□□□ -1.45
VPS53-207ENST00000570510 CFC1P0CG37 223 aa5.98□□□□□ -1.45
VPS53-207ENST00000570510 A0A0B4J2C4 111 aa5.97□□□□□ -1.45
VPS53-207ENST00000570510 C9orf153Q5TBE3 101 aa5.97□□□□□ -1.45
VPS53-207ENST00000570510 PAM16Q9Y3D7 125 aa5.97□□□□□ -1.45
VPS53-207ENST00000570510 Q6Q795 121 aa5.96□□□□□ -1.46
VPS53-207ENST00000570510 LINC00575Q6W349 94 aa5.96□□□□□ -1.46
VPS53-207ENST00000570510 H0YGX0 51 aa5.95□□□□□ -1.46
VPS53-207ENST00000570510 OCIAD2Q56VL3 154 aa5.95□□□□□ -1.46
VPS53-207ENST00000570510 Q5XG85 94 aa5.95□□□□□ -1.46
VPS53-207ENST00000570510 ST20-AS1Q8NBB2 130 aa5.95□□□□□ -1.46
VPS53-207ENST00000570510 C14orf144Q96I85 54 aa5.95□□□□□ -1.46
VPS53-207ENST00000570510 LIMD2Q9BT23 127 aa5.95□□□□□ -1.46
VPS53-207ENST00000570510 PRO1933Q9H354 126 aa5.95□□□□□ -1.46
VPS53-207ENST00000570510 USH2AO75445 5202 aa5.94□□□□□ -1.46
VPS53-207ENST00000570510 A0A1B0GX51 115 aa5.94□□□□□ -1.46
VPS53-207ENST00000570510 hADV29S1A0JD25 119 aa5.94□□□□□ -1.46
VPS53-207ENST00000570510 PYY3Q5JQD4 70 aa5.94□□□□□ -1.46
VPS53-207ENST00000570510 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.94□□□□□ -1.46
VPS53-207ENST00000570510 LOC100996750A0A140TA64 210 aa5.93□□□□□ -1.46
VPS53-207ENST00000570510 C2orf91Q6ZV80 131 aa5.93□□□□□ -1.46
VPS53-207ENST00000570510 CEND1Q8N111 149 aa5.93□□□□□ -1.46
VPS53-207ENST00000570510 RAB37Q96AX2 223 aa5.93□□□□□ -1.46
VPS53-207ENST00000570510 KRTAP4-6Q9BYQ5 205 aa5.93□□□□□ -1.46
VPS53-207ENST00000570510 SSPOA2VEC9 5147 aa5.93□□□□□ -1.46
VPS53-207ENST00000570510 FCGBPQ9Y6R7 5405 aaPredicted RBP5.92□□□□□ -1.46
VPS53-207ENST00000570510 H3BQ85 93 aa5.91□□□□□ -1.46
VPS53-207ENST00000570510 H3BS24 57 aa5.91□□□□□ -1.46
VPS53-207ENST00000570510 Q6JHZ5 121 aa5.91□□□□□ -1.46
VPS53-207ENST00000570510 SMIM29Q86T20 159 aa5.91□□□□□ -1.46
VPS53-207ENST00000570510 FLGP20930 4061 aaPredicted RBP5.91□□□□□ -1.46
VPS53-207ENST00000570510 HSD52Q0P140 79 aa5.9□□□□□ -1.46
VPS53-207ENST00000570510 HRCT1Q6UXD1 115 aa5.9□□□□□ -1.46
VPS53-207ENST00000570510 UQCR10Q9UDW1 63 aa5.9□□□□□ -1.46
VPS53-207ENST00000570510 PRO1854Q9UHT4 67 aa5.9□□□□□ -1.46
VPS53-207ENST00000570510 F8WEM9 126 aa5.89□□□□□ -1.47
VPS53-207ENST00000570510 H7C2G1 150 aa5.88□□□□□ -1.47
VPS53-207ENST00000570510 C21orf62-AS1Q17RA5 79 aa5.88□□□□□ -1.47
VPS53-207ENST00000570510 Q6ZQY7 126 aa5.88□□□□□ -1.47
VPS53-207ENST00000570510 DEFB105AQ8NG35 78 aa5.88□□□□□ -1.47
VPS53-207ENST00000570510 C12orf57Q99622 126 aa5.87□□□□□ -1.47
VPS53-207ENST00000570510 MACF1Q9UPN3 7388 aaKnown RBP5.86□□□□□ -1.47
VPS53-207ENST00000570510 SYNE2Q8WXH0 6885 aaKnown RBP5.86□□□□□ -1.47
VPS53-207ENST00000570510 Q1RN00 199 aa5.86□□□□□ -1.47
VPS53-207ENST00000570510 KRTAP19-1Q8IUB9 90 aa5.86□□□□□ -1.47
VPS53-207ENST00000570510 TCL1BO95988 128 aa5.85□□□□□ -1.47
VPS53-207ENST00000570510 COX6CP09669 75 aa5.85□□□□□ -1.47
VPS53-207ENST00000570510 RPL37P61927 97 aaKnown RBP5.85□□□□□ -1.47
VPS53-207ENST00000570510 LINC00846Q9NV44 126 aa5.85□□□□□ -1.47
VPS53-207ENST00000570510 FXYD2P54710 66 aa5.84□□□□□ -1.47
VPS53-207ENST00000570510 CLEC2BQ92478 149 aa5.84□□□□□ -1.47
VPS53-207ENST00000570510 SNHG12Q9BXW3 62 aa5.84□□□□□ -1.47
VPS53-207ENST00000570510 SMIM6P0DI80 62 aa5.82□□□□□ -1.48
VPS53-207ENST00000570510 KRTAP9-8Q9BYQ0 159 aa5.8□□□□□ -1.48
VPS53-207ENST00000570510 M0R143 59 aa5.79□□□□□ -1.48
VPS53-207ENST00000570510 TRIAP1O43715 76 aa5.79□□□□□ -1.48
VPS53-207ENST00000570510 DNAL4O96015 105 aa5.79□□□□□ -1.48
VPS53-207ENST00000570510 TRBV7-7A0A0K0K1E9 115 aa5.78□□□□□ -1.48
VPS53-207ENST00000570510 TMEM256-PLSCR3K7ERE1 68 aa5.78□□□□□ -1.48
VPS53-207ENST00000570510 IGFL1Q6UW32 110 aa5.78□□□□□ -1.48
VPS53-207ENST00000570510 SS18L2Q9UHA2 77 aa5.78□□□□□ -1.48
VPS53-207ENST00000570510 PSMB2P49721 201 aa5.77□□□□□ -1.49
VPS53-207ENST00000570510 NDUFV3P56181 108 aaKnown RBP5.77□□□□□ -1.49
VPS53-207ENST00000570510 C1orf195Q5TG92 126 aa5.77□□□□□ -1.49
VPS53-207ENST00000570510 ATP11AUNQ6ZP68 121 aa5.77□□□□□ -1.49
VPS53-207ENST00000570510 TEN1Q86WV5 123 aa5.77□□□□□ -1.49
VPS53-207ENST00000570510 FAM218AQ96MZ4 157 aa5.77□□□□□ -1.49
VPS53-207ENST00000570510 TRACP01848 142 aa5.76□□□□□ -1.49
VPS53-207ENST00000570510 ORMDL1Q9P0S3 153 aa5.76□□□□□ -1.49
VPS53-207ENST00000570510 UBE2V1Q13404 147 aa5.74□□□□□ -1.49
VPS53-207ENST00000570510 TSTD3H0UI37 97 aa5.73□□□□□ -1.49
VPS53-207ENST00000570510 H3BMG7 143 aa5.73□□□□□ -1.49
VPS53-207ENST00000570510 TRBV20-1A0A075B6N2 111 aa5.72□□□□□ -1.49
VPS53-207ENST00000570510 LST1O00453 97 aa5.72□□□□□ -1.49
VPS53-207ENST00000570510 FABP2P12104 132 aa5.72□□□□□ -1.49
VPS53-207ENST00000570510 TRBV7-4A0A0J9YYF1 115 aa5.71□□□□□ -1.5
VPS53-207ENST00000570510 K7ERJ3 54 aa5.71□□□□□ -1.5
VPS53-207ENST00000570510 SCGB1C2P0DMR2 95 aa5.71□□□□□ -1.5
VPS53-207ENST00000570510 KRTAP10-10P60014 251 aa5.71□□□□□ -1.5
VPS53-207ENST00000570510 LYRM7Q5U5X0 104 aa5.71□□□□□ -1.5
VPS53-207ENST00000570510 A0A1B0GW54 56 aa5.69□□□□□ -1.5
VPS53-207ENST00000570510 H3BUT2 72 aa5.69□□□□□ -1.5
VPS53-207ENST00000570510 MT2AP02795 61 aa5.69□□□□□ -1.5
VPS53-207ENST00000570510 KRTAP6-3Q3LI67 103 aa5.68□□□□□ -1.5
VPS53-207ENST00000570510 ANKRD29Q8N6D5 301 aa5.68□□□□□ -1.5
VPS53-207ENST00000570510 A0A0G2JQZ4 141 aa5.67□□□□□ -1.5
VPS53-207ENST00000570510 ATXN8Q156A1 80 aa5.66□□□□□ -1.5
VPS53-207ENST00000570510 FAM236DA0A1B0GTK5 79 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms