RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 PPDPFLQ8WWR9 84 aa10.34□□□□□ -0.75
CLN3-227ENST00000567495 RAB37Q96AX2 223 aa10.34□□□□□ -0.75
CLN3-227ENST00000567495 SNCGO76070 127 aa10.33□□□□□ -0.76
CLN3-227ENST00000567495 CFC1BP0CG36 223 aa10.33□□□□□ -0.76
CLN3-227ENST00000567495 CFC1P0CG37 223 aa10.33□□□□□ -0.76
CLN3-227ENST00000567495 Q6JHZ5 121 aa10.33□□□□□ -0.76
CLN3-227ENST00000567495 A0A0B4J2C4 111 aa10.32□□□□□ -0.76
CLN3-227ENST00000567495 TCL1BO95988 128 aa10.31□□□□□ -0.76
CLN3-227ENST00000567495 IGLV8-61A0A075B6I0 122 aa10.3□□□□□ -0.76
CLN3-227ENST00000567495 H0YGX0 51 aa10.3□□□□□ -0.76
CLN3-227ENST00000567495 C2orf91Q6ZV80 131 aa10.3□□□□□ -0.76
CLN3-227ENST00000567495 A0A0G2JQZ4 141 aa10.28□□□□□ -0.76
CLN3-227ENST00000567495 TMEM238LA0A1B0GVL6 79 aa10.28□□□□□ -0.76
CLN3-227ENST00000567495 A6NJY4 79 aa10.28□□□□□ -0.76
CLN3-227ENST00000567495 OCIAD2Q56VL3 154 aa10.28□□□□□ -0.76
CLN3-227ENST00000567495 C1orf195Q5TG92 126 aa10.28□□□□□ -0.76
CLN3-227ENST00000567495 CEND1Q8N111 149 aa10.28□□□□□ -0.76
CLN3-227ENST00000567495 SNHG12Q9BXW3 62 aa10.28□□□□□ -0.76
CLN3-227ENST00000567495 CLEC2BQ92478 149 aa10.27□□□□□ -0.77
CLN3-227ENST00000567495 FAT4Q6V0I7 4981 aa10.25□□□□□ -0.77
CLN3-227ENST00000567495 PRO1854Q9UHT4 67 aa10.24□□□□□ -0.77
CLN3-227ENST00000567495 GHRHP01286 108 aa10.23□□□□□ -0.77
CLN3-227ENST00000567495 C9orf92A6NGG3 77 aa10.22□□□□□ -0.77
CLN3-227ENST00000567495 IGFL1Q6UW32 110 aa10.22□□□□□ -0.77
CLN3-227ENST00000567495 TRBV7-7A0A0K0K1E9 115 aa10.21□□□□□ -0.77
CLN3-227ENST00000567495 PYY3Q5JQD4 70 aa10.21□□□□□ -0.77
CLN3-227ENST00000567495 LCE2AQ5TA79 106 aaPredicted RBP10.21□□□□□ -0.77
CLN3-227ENST00000567495 A0A1B0GX51 115 aa10.2□□□□□ -0.78
CLN3-227ENST00000567495 FXYD2P54710 66 aa10.18□□□□□ -0.78
CLN3-227ENST00000567495 HSD52Q0P140 79 aa10.17□□□□□ -0.78
CLN3-227ENST00000567495 KRTAP4-1Q9BYQ7 146 aa10.17□□□□□ -0.78
CLN3-227ENST00000567495 FAM218AQ96MZ4 157 aa10.16□□□□□ -0.78
CLN3-227ENST00000567495 H3BUT2 72 aa10.14□□□□□ -0.79
CLN3-227ENST00000567495 NDUFV3P56181 108 aaKnown RBP10.13□□□□□ -0.79
CLN3-227ENST00000567495 PCOTHQ58A44 107 aa10.13□□□□□ -0.79
CLN3-227ENST00000567495 TMA7Q9Y2S6 64 aaKnown RBP10.13□□□□□ -0.79
CLN3-227ENST00000567495 Q6Q795 121 aa10.12□□□□□ -0.79
CLN3-227ENST00000567495 UQCR10Q9UDW1 63 aa10.12□□□□□ -0.79
CLN3-227ENST00000567495 TRIAP1O43715 76 aa10.11□□□□□ -0.79
CLN3-227ENST00000567495 H3BQ85 93 aa10.1□□□□□ -0.79
CLN3-227ENST00000567495 TEN1Q86WV5 123 aa10.1□□□□□ -0.79
CLN3-227ENST00000567495 SS18L2Q9UHA2 77 aa10.1□□□□□ -0.79
CLN3-227ENST00000567495 COX6CP09669 75 aa10.09□□□□□ -0.79
CLN3-227ENST00000567495 FABP2P12104 132 aa10.09□□□□□ -0.79
CLN3-227ENST00000567495 H3BMG7 143 aa10.08□□□□□ -0.8
CLN3-227ENST00000567495 LST1O00453 97 aa10.08□□□□□ -0.8
CLN3-227ENST00000567495 DNAL4O96015 105 aa10.07□□□□□ -0.8
CLN3-227ENST00000567495 PSMB2P49721 201 aa10.07□□□□□ -0.8
CLN3-227ENST00000567495 RPL37P61927 97 aaKnown RBP10.07□□□□□ -0.8
CLN3-227ENST00000567495 K7ERJ3 54 aa10.04□□□□□ -0.8
CLN3-227ENST00000567495 ORMDL1Q9P0S3 153 aa10.03□□□□□ -0.8
CLN3-227ENST00000567495 TMEM256-PLSCR3K7ERE1 68 aa10□□□□□ -0.81
CLN3-227ENST00000567495 A0A087WSZ3 146 aa9.99□□□□□ -0.81
CLN3-227ENST00000567495 OBSCN-AS1Q96MR7 158 aa9.98□□□□□ -0.81
CLN3-227ENST00000567495 ANKRD29Q8N6D5 301 aa9.97□□□□□ -0.81
CLN3-227ENST00000567495 TRACP01848 142 aa9.95□□□□□ -0.82
CLN3-227ENST00000567495 Q75L30 129 aa9.95□□□□□ -0.82
CLN3-227ENST00000567495 TRBV7-4A0A0J9YYF1 115 aa9.94□□□□□ -0.82
CLN3-227ENST00000567495 SCGB1C2P0DMR2 95 aa9.94□□□□□ -0.82
CLN3-227ENST00000567495 A0A1W2PNM2 257 aa9.93□□□□□ -0.82
CLN3-227ENST00000567495 UBE2V1Q13404 147 aa9.93□□□□□ -0.82
CLN3-227ENST00000567495 LCE2CQ5TA81 110 aa9.93□□□□□ -0.82
CLN3-227ENST00000567495 ATP11AUNQ6ZP68 121 aa9.92□□□□□ -0.82
CLN3-227ENST00000567495 KRTAP19-2Q3LHN2 52 aa9.91□□□□□ -0.82
CLN3-227ENST00000567495 KRTAP9-2Q9BYQ4 174 aa9.91□□□□□ -0.82
CLN3-227ENST00000567495 Q96NJ1 140 aa9.9□□□□□ -0.82
CLN3-227ENST00000567495 M0R143 59 aa9.88□□□□□ -0.83
CLN3-227ENST00000567495 A0A1B0GV72 72 aa9.86□□□□□ -0.83
CLN3-227ENST00000567495 CCKP06307 115 aa9.86□□□□□ -0.83
CLN3-227ENST00000567495 SMIM6P0DI80 62 aa9.85□□□□□ -0.83
CLN3-227ENST00000567495 C20orf166-AS1Q96NR2 134 aa9.85□□□□□ -0.83
CLN3-227ENST00000567495 SIGMAR1Q99720 223 aa9.84□□□□□ -0.83
CLN3-227ENST00000567495 RBM3P98179 157 aaKnown RBP9.83□□□□□ -0.84
CLN3-227ENST00000567495 A8MUU9 505 aa9.82□□□□□ -0.84
CLN3-227ENST00000567495 MT1HP80294 61 aa9.82□□□□□ -0.84
CLN3-227ENST00000567495 IGKV4-1P06312 121 aa9.81□□□□□ -0.84
CLN3-227ENST00000567495 BAALC-AS2P0C853 105 aa9.81□□□□□ -0.84
CLN3-227ENST00000567495 COX6B2Q6YFQ2 88 aa9.81□□□□□ -0.84
CLN3-227ENST00000567495 DSCR8Q96T75 97 aa9.81□□□□□ -0.84
CLN3-227ENST00000567495 C21orf62-AS1Q17RA5 79 aa9.8□□□□□ -0.84
CLN3-227ENST00000567495 LINC00472Q9H8W2 130 aa9.79□□□□□ -0.84
CLN3-227ENST00000567495 LINC00313P59037 77 aa9.78□□□□□ -0.84
CLN3-227ENST00000567495 ATXN8Q156A1 80 aa9.78□□□□□ -0.84
CLN3-227ENST00000567495 DSCR10P59022 87 aa9.77□□□□□ -0.85
CLN3-227ENST00000567495 C9JAW5 83 aa9.75□□□□□ -0.85
CLN3-227ENST00000567495 VPS25Q9BRG1 176 aa9.75□□□□□ -0.85
CLN3-227ENST00000567495 TSTD3H0UI37 97 aa9.73□□□□□ -0.85
CLN3-227ENST00000567495 LYRM7Q5U5X0 104 aa9.73□□□□□ -0.85
CLN3-227ENST00000567495 JMJD7-PLA2G4BH0Y9G9 81 aa9.72□□□□□ -0.85
CLN3-227ENST00000567495 DEFB116Q30KQ4 102 aa9.71□□□□□ -0.86
CLN3-227ENST00000567495 A0A1B0GW54 56 aa9.69□□□□□ -0.86
CLN3-227ENST00000567495 M0R2T5 61 aa9.69□□□□□ -0.86
CLN3-227ENST00000567495 LCE2DQ5TA82 110 aaPredicted RBP9.69□□□□□ -0.86
CLN3-227ENST00000567495 NAA38Q9BRA0 125 aaKnown RBP9.69□□□□□ -0.86
CLN3-227ENST00000567495 IGHV6-1A0A0B4J1U7 121 aa9.68□□□□□ -0.86
CLN3-227ENST00000567495 KRTAP16-1A8MUX0 517 aa9.68□□□□□ -0.86
CLN3-227ENST00000567495 J3KT08 172 aa9.68□□□□□ -0.86
CLN3-227ENST00000567495 PDE6GP18545 87 aa9.68□□□□□ -0.86
CLN3-227ENST00000567495 TRBV20-1A0A075B6N2 111 aa9.67□□□□□ -0.86
CLN3-227ENST00000567495 C8orf87E5RJ46 101 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 134.3 ms