RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 M0R143 59 aa10□□□□□ -0.81
CLN3-217ENST00000565354 FAT4Q6V0I7 4981 aa10□□□□□ -0.81
CLN3-217ENST00000565354 IGLV5-48A0A075B6I7 105 aa9.99□□□□□ -0.81
CLN3-217ENST00000565354 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.98□□□□□ -0.81
CLN3-217ENST00000565354 TRIAP1O43715 76 aa9.97□□□□□ -0.81
CLN3-217ENST00000565354 COX6CP09669 75 aa9.97□□□□□ -0.81
CLN3-217ENST00000565354 LINC01547P58512 204 aaPredicted RBP9.97□□□□□ -0.81
CLN3-217ENST00000565354 PRR4Q16378 134 aa9.97□□□□□ -0.81
CLN3-217ENST00000565354 F8WEM9 126 aa9.96□□□□□ -0.82
CLN3-217ENST00000565354 Q8N377 158 aa9.96□□□□□ -0.82
CLN3-217ENST00000565354 LCE2AQ5TA79 106 aaPredicted RBP9.95□□□□□ -0.82
CLN3-217ENST00000565354 SPINK1P00995 79 aa9.94□□□□□ -0.82
CLN3-217ENST00000565354 SMIM29Q86T20 159 aa9.93□□□□□ -0.82
CLN3-217ENST00000565354 FAM218AQ96MZ4 157 aa9.93□□□□□ -0.82
CLN3-217ENST00000565354 A0A1B0GX51 115 aa9.92□□□□□ -0.82
CLN3-217ENST00000565354 OCIAD2Q56VL3 154 aa9.92□□□□□ -0.82
CLN3-217ENST00000565354 SCGB1C2P0DMR2 95 aa9.91□□□□□ -0.82
CLN3-217ENST00000565354 PPDPFLQ8WWR9 84 aa9.91□□□□□ -0.82
CLN3-217ENST00000565354 SNHG12Q9BXW3 62 aa9.91□□□□□ -0.82
CLN3-217ENST00000565354 DNAL4O96015 105 aa9.9□□□□□ -0.82
CLN3-217ENST00000565354 GHRHP01286 108 aa9.9□□□□□ -0.82
CLN3-217ENST00000565354 CLEC2BQ92478 149 aa9.9□□□□□ -0.82
CLN3-217ENST00000565354 BATFQ16520 125 aa9.89□□□□□ -0.83
CLN3-217ENST00000565354 HRCT1Q6UXD1 115 aa9.89□□□□□ -0.83
CLN3-217ENST00000565354 RETNLBQ9BQ08 111 aa9.89□□□□□ -0.83
CLN3-217ENST00000565354 RPS29P62273 56 aaKnown RBP9.86□□□□□ -0.83
CLN3-217ENST00000565354 FABP2P12104 132 aa9.84□□□□□ -0.83
CLN3-217ENST00000565354 LIMD2Q9BT23 127 aa9.84□□□□□ -0.83
CLN3-217ENST00000565354 CD164Q04900 197 aa9.82□□□□□ -0.84
CLN3-217ENST00000565354 Q6JHZ5 121 aa9.82□□□□□ -0.84
CLN3-217ENST00000565354 ORMDL1Q9P0S3 153 aa9.82□□□□□ -0.84
CLN3-217ENST00000565354 A0A0G2JQZ4 141 aa9.8□□□□□ -0.84
CLN3-217ENST00000565354 H3BQ85 93 aa9.8□□□□□ -0.84
CLN3-217ENST00000565354 NAA38Q9BRA0 125 aaKnown RBP9.8□□□□□ -0.84
CLN3-217ENST00000565354 NDUFV3P56181 108 aaKnown RBP9.79□□□□□ -0.84
CLN3-217ENST00000565354 IGLV8-61A0A075B6I0 122 aa9.78□□□□□ -0.84
CLN3-217ENST00000565354 IGLV7-46A0A075B6I9 117 aa9.78□□□□□ -0.84
CLN3-217ENST00000565354 LST1O00453 97 aa9.78□□□□□ -0.84
CLN3-217ENST00000565354 TRACP01848 142 aa9.78□□□□□ -0.84
CLN3-217ENST00000565354 LYRM7Q5U5X0 104 aa9.78□□□□□ -0.84
CLN3-217ENST00000565354 H3BUT2 72 aa9.77□□□□□ -0.85
CLN3-217ENST00000565354 IGFL1Q6UW32 110 aa9.77□□□□□ -0.85
CLN3-217ENST00000565354 FP248Q71RG6 208 aaPredicted RBP9.77□□□□□ -0.85
CLN3-217ENST00000565354 TMEM256-PLSCR3K7ERE1 68 aa9.76□□□□□ -0.85
CLN3-217ENST00000565354 H3BMG7 143 aa9.75□□□□□ -0.85
CLN3-217ENST00000565354 ATXN8Q156A1 80 aa9.75□□□□□ -0.85
CLN3-217ENST00000565354 A0A1B0GV72 72 aa9.71□□□□□ -0.86
CLN3-217ENST00000565354 TCL1BO95988 128 aa9.71□□□□□ -0.86
CLN3-217ENST00000565354 MUC17Q685J3 4493 aa9.7□□□□□ -0.86
CLN3-217ENST00000565354 C9orf118A6NHY6 69 aa9.69□□□□□ -0.86
CLN3-217ENST00000565354 UBE2V1Q13404 147 aa9.69□□□□□ -0.86
CLN3-217ENST00000565354 TRBV7-7A0A0K0K1E9 115 aa9.68□□□□□ -0.86
CLN3-217ENST00000565354 TPRXLQ17RH7 258 aa9.68□□□□□ -0.86
CLN3-217ENST00000565354 Q5XG85 94 aa9.68□□□□□ -0.86
CLN3-217ENST00000565354 CDIP1Q9H305 208 aa9.68□□□□□ -0.86
CLN3-217ENST00000565354 TRBV20-1A0A075B6N2 111 aa9.67□□□□□ -0.86
CLN3-217ENST00000565354 TAX1BP3O14907 124 aa9.67□□□□□ -0.86
CLN3-217ENST00000565354 BAALC-AS2P0C853 105 aa9.67□□□□□ -0.86
CLN3-217ENST00000565354 PCP4L1A6NKN8 68 aa9.66□□□□□ -0.86
CLN3-217ENST00000565354 ANKRD29Q8N6D5 301 aa9.66□□□□□ -0.86
CLN3-217ENST00000565354 TEN1Q86WV5 123 aa9.65□□□□□ -0.86
CLN3-217ENST00000565354 A0A1W2PPM0 123 aa9.63□□□□□ -0.87
CLN3-217ENST00000565354 COL5A1-AS1Q5SY13 56 aa9.63□□□□□ -0.87
CLN3-217ENST00000565354 C1orf195Q5TG92 126 aa9.62□□□□□ -0.87
CLN3-217ENST00000565354 Q6Q795 121 aa9.62□□□□□ -0.87
CLN3-217ENST00000565354 SS18L2Q9UHA2 77 aa9.62□□□□□ -0.87
CLN3-217ENST00000565354 RBM3P98179 157 aaKnown RBP9.61□□□□□ -0.87
CLN3-217ENST00000565354 C9JAW5 83 aa9.6□□□□□ -0.87
CLN3-217ENST00000565354 DSCR8Q96T75 97 aa9.6□□□□□ -0.87
CLN3-217ENST00000565354 KRTAP13-3Q3SY46 172 aa9.59□□□□□ -0.87
CLN3-217ENST00000565354 A0A087WSZ3 146 aa9.58□□□□□ -0.88
CLN3-217ENST00000565354 ASB16-AS1Q495Z4 193 aa9.58□□□□□ -0.88
CLN3-217ENST00000565354 A0A1W2PNM2 257 aa9.57□□□□□ -0.88
CLN3-217ENST00000565354 CCKP06307 115 aa9.57□□□□□ -0.88
CLN3-217ENST00000565354 LCE2DQ5TA82 110 aaPredicted RBP9.57□□□□□ -0.88
CLN3-217ENST00000565354 VPS25Q9BRG1 176 aa9.57□□□□□ -0.88
CLN3-217ENST00000565354 TRBV7-4A0A0J9YYF1 115 aa9.55□□□□□ -0.88
CLN3-217ENST00000565354 JMJD7-PLA2G4BH0Y9G9 81 aa9.55□□□□□ -0.88
CLN3-217ENST00000565354 CRCT1Q9UGL9 99 aa9.55□□□□□ -0.88
CLN3-217ENST00000565354 SPCS1Q9Y6A9 102 aa9.55□□□□□ -0.88
CLN3-217ENST00000565354 C9orf92A6NGG3 77 aa9.53□□□□□ -0.88
CLN3-217ENST00000565354 FSIP2Q5CZC0 6907 aa9.52□□□□□ -0.89
CLN3-217ENST00000565354 H3BT86 120 aa9.51□□□□□ -0.89
CLN3-217ENST00000565354 MTURNQ8N3F0 131 aa9.5□□□□□ -0.89
CLN3-217ENST00000565354 PDE6GP18545 87 aa9.46□□□□□ -0.9
CLN3-217ENST00000565354 C21orf62-AS1Q17RA5 79 aa9.46□□□□□ -0.9
CLN3-217ENST00000565354 XP32Q5T750 250 aa9.46□□□□□ -0.9
CLN3-217ENST00000565354 C14orf132Q9NPU4 83 aa9.46□□□□□ -0.9
CLN3-217ENST00000565354 LOC110117498A0A087WWA1 95 aa9.44□□□□□ -0.9
CLN3-217ENST00000565354 Q6ZQT0 140 aa9.44□□□□□ -0.9
CLN3-217ENST00000565354 SIGMAR1Q99720 223 aa9.44□□□□□ -0.9
CLN3-217ENST00000565354 K7EP34 96 aa9.43□□□□□ -0.9
CLN3-217ENST00000565354 SEC61BP60468 96 aaKnown RBP9.42□□□□□ -0.9
CLN3-217ENST00000565354 GTF2H5Q6ZYL4 71 aa9.41□□□□□ -0.9
CLN3-217ENST00000565354 Q96NJ1 140 aa9.41□□□□□ -0.9
CLN3-217ENST00000565354 IGKV4-1P06312 121 aa9.4□□□□□ -0.9
CLN3-217ENST00000565354 OBSCN-AS1Q96MR7 158 aa9.4□□□□□ -0.9
CLN3-217ENST00000565354 A0A1B0GW54 56 aa9.37□□□□□ -0.91
CLN3-217ENST00000565354 DEFB116Q30KQ4 102 aa9.37□□□□□ -0.91
CLN3-217ENST00000565354 KRTAP4-1Q9BYQ7 146 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms