RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 A0A1B0GWB2 263 aa3.64□□□□□ -1.83
VPS4A-203ENST00000564399 LEPROTL1O95214 131 aa3.64□□□□□ -1.83
VPS4A-203ENST00000564399 IGKCP01834 107 aa3.64□□□□□ -1.83
VPS4A-203ENST00000564399 CLLU1Q5K131 121 aa3.64□□□□□ -1.83
VPS4A-203ENST00000564399 IGFL1Q6UW32 110 aa3.64□□□□□ -1.83
VPS4A-203ENST00000564399 MUC12Q9UKN1 5478 aa3.64□□□□□ -1.83
VPS4A-203ENST00000564399 RBM12B-AS1Q9P1G2 102 aa3.63□□□□□ -1.83
VPS4A-203ENST00000564399 A8MUU9 505 aa3.62□□□□□ -1.83
VPS4A-203ENST00000564399 LST1O00453 97 aa3.62□□□□□ -1.83
VPS4A-203ENST00000564399 Q6JHZ5 121 aa3.62□□□□□ -1.83
VPS4A-203ENST00000564399 CLEC2BQ92478 149 aa3.62□□□□□ -1.83
VPS4A-203ENST00000564399 LITAFQ99732 161 aa3.62□□□□□ -1.83
VPS4A-203ENST00000564399 NHP2Q9NX24 153 aaKnown RBP3.62□□□□□ -1.83
VPS4A-203ENST00000564399 A4D1N5 150 aa3.61□□□□□ -1.83
VPS4A-203ENST00000564399 A6NDN8 102 aa3.61□□□□□ -1.83
VPS4A-203ENST00000564399 E9PLD3 99 aa3.61□□□□□ -1.83
VPS4A-203ENST00000564399 TIMM17BO60830 172 aa3.61□□□□□ -1.83
VPS4A-203ENST00000564399 SERF1AO75920 110 aa3.61□□□□□ -1.83
VPS4A-203ENST00000564399 FABP4P15090 132 aa3.61□□□□□ -1.83
VPS4A-203ENST00000564399 LCE4AQ5TA78 99 aa3.61□□□□□ -1.83
VPS4A-203ENST00000564399 GPR98Q8WXG9 6306 aa3.6□□□□□ -1.83
VPS4A-203ENST00000564399 SLC7A5P1Q8MH63 180 aa3.6□□□□□ -1.83
VPS4A-203ENST00000564399 KRTAP4-7Q9BYR0 210 aa3.6□□□□□ -1.83
VPS4A-203ENST00000564399 HSPB8Q9UJY1 196 aa3.6□□□□□ -1.83
VPS4A-203ENST00000564399 TRAV13-2A0A0B4J235 113 aa3.58□□□□□ -1.84
VPS4A-203ENST00000564399 ZNF815PA8K554 130 aa3.58□□□□□ -1.84
VPS4A-203ENST00000564399 OCIAD2Q56VL3 154 aa3.58□□□□□ -1.84
VPS4A-203ENST00000564399 KRTAP16-1A8MUX0 517 aa3.57□□□□□ -1.84
VPS4A-203ENST00000564399 HRES1P13985 223 aa3.57□□□□□ -1.84
VPS4A-203ENST00000564399 APOC3P02656 99 aa3.56□□□□□ -1.84
VPS4A-203ENST00000564399 DSCR10P59022 87 aa3.56□□□□□ -1.84
VPS4A-203ENST00000564399 VAMP3Q15836 100 aa3.56□□□□□ -1.84
VPS4A-203ENST00000564399 Q6ZQY7 126 aa3.56□□□□□ -1.84
VPS4A-203ENST00000564399 Q6ZVH6 145 aa3.56□□□□□ -1.84
VPS4A-203ENST00000564399 MPLKIPQ8TAP9 179 aa3.56□□□□□ -1.84
VPS4A-203ENST00000564399 COPS9Q8WXC6 57 aa3.56□□□□□ -1.84
VPS4A-203ENST00000564399 TTTY13Q9BZ97 58 aa3.56□□□□□ -1.84
VPS4A-203ENST00000564399 SS18L2Q9UHA2 77 aa3.56□□□□□ -1.84
VPS4A-203ENST00000564399 KMT2DO14686 5537 aa3.55□□□□□ -1.84
VPS4A-203ENST00000564399 SCGB1D4Q6XE38 83 aa3.55□□□□□ -1.84
VPS4A-203ENST00000564399 MTURNQ8N3F0 131 aa3.55□□□□□ -1.84
VPS4A-203ENST00000564399 Q8N9P0 234 aaPredicted RBP3.55□□□□□ -1.84
VPS4A-203ENST00000564399 SMIM11BQ8TCY0 68 aa3.55□□□□□ -1.84
VPS4A-203ENST00000564399 KRTAP4-9Q9BYQ8 210 aa3.55□□□□□ -1.84
VPS4A-203ENST00000564399 hADV29S1A0JD25 119 aa3.54□□□□□ -1.84
VPS4A-203ENST00000564399 H3BUT2 72 aa3.54□□□□□ -1.84
VPS4A-203ENST00000564399 SNAPINO95295 136 aa3.54□□□□□ -1.84
VPS4A-203ENST00000564399 LINC00575Q6W349 94 aa3.54□□□□□ -1.84
VPS4A-203ENST00000564399 SNHG12Q9BXW3 62 aa3.54□□□□□ -1.84
VPS4A-203ENST00000564399 A8MWP4 228 aa3.53□□□□□ -1.84
VPS4A-203ENST00000564399 TRGC2P03986 189 aa3.53□□□□□ -1.84
VPS4A-203ENST00000564399 IFITM1P13164 125 aa3.53□□□□□ -1.84
VPS4A-203ENST00000564399 NOTCH2NLQ7Z3S9 236 aa3.53□□□□□ -1.84
VPS4A-203ENST00000564399 SCGB1D1O95968 90 aa3.52□□□□□ -1.85
VPS4A-203ENST00000564399 LINC00313P59037 77 aa3.52□□□□□ -1.85
VPS4A-203ENST00000564399 NDUFA5Q16718 116 aa3.52□□□□□ -1.85
VPS4A-203ENST00000564399 MUSTN1Q8IVN3 82 aa3.52□□□□□ -1.85
VPS4A-203ENST00000564399 SVBPQ8N300 66 aa3.52□□□□□ -1.85
VPS4A-203ENST00000564399 YPEL4Q96NS1 127 aa3.52□□□□□ -1.85
VPS4A-203ENST00000564399 SIGMAR1Q99720 223 aa3.52□□□□□ -1.85
VPS4A-203ENST00000564399 SYS1-DBNDD2H3BUS1 97 aa3.51□□□□□ -1.85
VPS4A-203ENST00000564399 A0A087WSZ3 146 aa3.5□□□□□ -1.85
VPS4A-203ENST00000564399 COLCA2A8K830 154 aa3.5□□□□□ -1.85
VPS4A-203ENST00000564399 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.5□□□□□ -1.85
VPS4A-203ENST00000564399 TEN1Q86WV5 123 aa3.5□□□□□ -1.85
VPS4A-203ENST00000564399 C9orf118A6NHY6 69 aa3.49□□□□□ -1.85
VPS4A-203ENST00000564399 LINC01545Q5VT33 79 aa3.49□□□□□ -1.85
VPS4A-203ENST00000564399 PPDPFLQ8WWR9 84 aa3.49□□□□□ -1.85
VPS4A-203ENST00000564399 MDN1Q9NU22 5596 aa3.48□□□□□ -1.85
VPS4A-203ENST00000564399 IGKV4-1P06312 121 aa3.47□□□□□ -1.85
VPS4A-203ENST00000564399 PET117Q6UWS5 81 aa3.47□□□□□ -1.85
VPS4A-203ENST00000564399 LCE5AQ5TCM9 118 aa3.46□□□□□ -1.86
VPS4A-203ENST00000564399 A6NN06 94 aa3.45□□□□□ -1.86
VPS4A-203ENST00000564399 SPINK7P58062 85 aa3.45□□□□□ -1.86
VPS4A-203ENST00000564399 C12orf57Q99622 126 aa3.45□□□□□ -1.86
VPS4A-203ENST00000564399 IGHV6-1A0A0B4J1U7 121 aa3.44□□□□□ -1.86
VPS4A-203ENST00000564399 KRTAP2-3P0C7H8 128 aa3.44□□□□□ -1.86
VPS4A-203ENST00000564399 NDUFV3P56181 108 aaKnown RBP3.44□□□□□ -1.86
VPS4A-203ENST00000564399 KRTAP2-4Q9BYR9 128 aa3.44□□□□□ -1.86
VPS4A-203ENST00000564399 BVES-AS1Q5T3Y7 98 aa3.43□□□□□ -1.86
VPS4A-203ENST00000564399 KRTAP4-11Q9BYQ6 195 aa3.43□□□□□ -1.86
VPS4A-203ENST00000564399 H3BMG7 143 aa3.42□□□□□ -1.86
VPS4A-203ENST00000564399 SNCGO76070 127 aa3.42□□□□□ -1.86
VPS4A-203ENST00000564399 C3orf79P0CE67 100 aa3.42□□□□□ -1.86
VPS4A-203ENST00000564399 KRTDAPP60985 99 aa3.42□□□□□ -1.86
VPS4A-203ENST00000564399 DEFB116Q30KQ4 102 aa3.42□□□□□ -1.86
VPS4A-203ENST00000564399 WFDC13Q8IUB5 93 aa3.42□□□□□ -1.86
VPS4A-203ENST00000564399 ZCCHC13Q8WW36 166 aaKnown RBP3.42□□□□□ -1.86
VPS4A-203ENST00000564399 KRTAP4-2Q9BYR5 136 aa3.42□□□□□ -1.86
VPS4A-203ENST00000564399 ATOH7Q8N100 152 aa3.41□□□□□ -1.86
VPS4A-203ENST00000564399 A0A1W2PNM2 257 aa3.4□□□□□ -1.87
VPS4A-203ENST00000564399 FABP2P12104 132 aa3.39□□□□□ -1.87
VPS4A-203ENST00000564399 KRTAP5-9P26371 169 aa3.39□□□□□ -1.87
VPS4A-203ENST00000564399 FAM218AQ96MZ4 157 aa3.39□□□□□ -1.87
VPS4A-203ENST00000564399 C8orf87E5RJ46 101 aa3.38□□□□□ -1.87
VPS4A-203ENST00000564399 HIST1H2BKO60814 126 aa3.37□□□□□ -1.87
VPS4A-203ENST00000564399 HIST1H2BJP06899 126 aa3.37□□□□□ -1.87
VPS4A-203ENST00000564399 HIST1H2BOP23527 126 aa3.37□□□□□ -1.87
VPS4A-203ENST00000564399 HIST1H2BBP33778 126 aa3.37□□□□□ -1.87
VPS4A-203ENST00000564399 HIST1H2BDP58876 126 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms