RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 LINC00315P59091 139 aa2.98□□□□□ -1.93
VPS35P1-201ENST00000563400 M0R2N4 97 aa2.96□□□□□ -1.94
VPS35P1-201ENST00000563400 LEPROTL1O95214 131 aa2.96□□□□□ -1.94
VPS35P1-201ENST00000563400 KRTAP5-11Q6L8G4 156 aa2.96□□□□□ -1.94
VPS35P1-201ENST00000563400 RPL39LQ96EH5 51 aaKnown RBP2.96□□□□□ -1.94
VPS35P1-201ENST00000563400 PMCHL2Q9BQD1 86 aa2.96□□□□□ -1.94
VPS35P1-201ENST00000563400 CDC42SE2Q9NRR3 84 aa2.96□□□□□ -1.94
VPS35P1-201ENST00000563400 NBEAL2Q6ZNJ1 2754 aa2.95□□□□□ -1.94
VPS35P1-201ENST00000563400 TRAV12-1A0A0B4J245 112 aa2.95□□□□□ -1.94
VPS35P1-201ENST00000563400 hADV29S1A0JD25 119 aa2.95□□□□□ -1.94
VPS35P1-201ENST00000563400 WFDC10BQ8IUB3 73 aa2.95□□□□□ -1.94
VPS35P1-201ENST00000563400 Q8N9L7 120 aa2.95□□□□□ -1.94
VPS35P1-201ENST00000563400 Q9BRP9 147 aa2.95□□□□□ -1.94
VPS35P1-201ENST00000563400 PRR34Q9NV39 138 aa2.95□□□□□ -1.94
VPS35P1-201ENST00000563400 PLNP26678 52 aa2.94□□□□□ -1.94
VPS35P1-201ENST00000563400 ATP5EP56381 51 aaPredicted RBP2.94□□□□□ -1.94
VPS35P1-201ENST00000563400 MOBPQ13875 183 aa2.94□□□□□ -1.94
VPS35P1-201ENST00000563400 PRO2289Q9P1D8 64 aa2.94□□□□□ -1.94
VPS35P1-201ENST00000563400 UBE2D4Q9Y2X8 147 aa2.94□□□□□ -1.94
VPS35P1-201ENST00000563400 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.93□□□□□ -1.94
VPS35P1-201ENST00000563400 IGKV3OR2-268A0A0C4DH90 116 aa2.93□□□□□ -1.94
VPS35P1-201ENST00000563400 LINC00959A0A1B0GUT2 108 aa2.93□□□□□ -1.94
VPS35P1-201ENST00000563400 IGKV2-29A2NJV5 120 aaPredicted RBP2.93□□□□□ -1.94
VPS35P1-201ENST00000563400 LINC01546A6NGU7 62 aa2.93□□□□□ -1.94
VPS35P1-201ENST00000563400 K7EP34 96 aa2.93□□□□□ -1.94
VPS35P1-201ENST00000563400 SPTSSBQ8NFR3 76 aa2.93□□□□□ -1.94
VPS35P1-201ENST00000563400 C18orf32Q8TCD1 76 aa2.93□□□□□ -1.94
VPS35P1-201ENST00000563400 PSORS1C2Q9UIG4 136 aa2.93□□□□□ -1.94
VPS35P1-201ENST00000563400 NDUFA1O15239 70 aa2.93□□□□□ -1.94
VPS35P1-201ENST00000563400 CCKP06307 115 aa2.93□□□□□ -1.94
VPS35P1-201ENST00000563400 IFI27L1Q96BM0 104 aa2.93□□□□□ -1.94
VPS35P1-201ENST00000563400 TRBV30A0A0K0K1B3 111 aa2.92□□□□□ -1.94
VPS35P1-201ENST00000563400 NUPR1O60356 82 aa2.92□□□□□ -1.94
VPS35P1-201ENST00000563400 IGKCP01834 107 aa2.92□□□□□ -1.94
VPS35P1-201ENST00000563400 COX17Q14061 63 aa2.92□□□□□ -1.94
VPS35P1-201ENST00000563400 PMCHL1Q16048 86 aa2.92□□□□□ -1.94
VPS35P1-201ENST00000563400 KRTAP26-1Q6PEX3 210 aa2.92□□□□□ -1.94
VPS35P1-201ENST00000563400 A0A087WTM6 91 aa2.91□□□□□ -1.94
VPS35P1-201ENST00000563400 IGIPA6NJ69 53 aa2.91□□□□□ -1.94
VPS35P1-201ENST00000563400 F8VRH5 84 aa2.91□□□□□ -1.94
VPS35P1-201ENST00000563400 C9orf116Q5BN46 136 aaPredicted RBP2.91□□□□□ -1.94
VPS35P1-201ENST00000563400 TMEM170BQ5T4T1 132 aa2.91□□□□□ -1.94
VPS35P1-201ENST00000563400 ENHOQ6UWT2 76 aa2.91□□□□□ -1.94
VPS35P1-201ENST00000563400 KRTAP11-1Q8IUC1 163 aa2.91□□□□□ -1.94
VPS35P1-201ENST00000563400 AMELXQ99217 191 aa2.91□□□□□ -1.94
VPS35P1-201ENST00000563400 STAB2Q8WWQ8 2551 aa2.91□□□□□ -1.94
VPS35P1-201ENST00000563400 IGLV4-60A0A075B6I1 120 aa2.9□□□□□ -1.95
VPS35P1-201ENST00000563400 MYMXA0A1B0GTQ4 84 aa2.9□□□□□ -1.95
VPS35P1-201ENST00000563400 CNBPP62633 177 aaKnown RBP2.9□□□□□ -1.95
VPS35P1-201ENST00000563400 Q1T7F1 81 aa2.9□□□□□ -1.95
VPS35P1-201ENST00000563400 C2orf82Q6UX34 121 aa2.9□□□□□ -1.95
VPS35P1-201ENST00000563400 Q8IZM0 81 aa2.9□□□□□ -1.95
VPS35P1-201ENST00000563400 TENM3Q9P273 2699 aa2.9□□□□□ -1.95
VPS35P1-201ENST00000563400 GVQW2A0A096LPI5 108 aaPredicted RBP2.89□□□□□ -1.95
VPS35P1-201ENST00000563400 A0A0G2JQZ4 141 aa2.89□□□□□ -1.95
VPS35P1-201ENST00000563400 RTL8CO15255 209 aa2.89□□□□□ -1.95
VPS35P1-201ENST00000563400 UBE2D1P51668 147 aa2.89□□□□□ -1.95
VPS35P1-201ENST00000563400 RPL39P62891 51 aaKnown RBP2.89□□□□□ -1.95
VPS35P1-201ENST00000563400 SPAG11BQ08648 103 aa2.89□□□□□ -1.95
VPS35P1-201ENST00000563400 CLPSL2Q6UWE3 100 aa2.89□□□□□ -1.95
VPS35P1-201ENST00000563400 MRPL35Q9NZE8 188 aaKnown RBP2.89□□□□□ -1.95
VPS35P1-201ENST00000563400 TOMM7Q9P0U1 55 aa2.89□□□□□ -1.95
VPS35P1-201ENST00000563400 TPRXLQ17RH7 258 aa2.88□□□□□ -1.95
VPS35P1-201ENST00000563400 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.88□□□□□ -1.95
VPS35P1-201ENST00000563400 LINC00167Q96N53 147 aa2.88□□□□□ -1.95
VPS35P1-201ENST00000563400 LRCOL1A6NCL2 159 aa2.88□□□□□ -1.95
VPS35P1-201ENST00000563400 IGLC3P0DOY3 106 aa2.88□□□□□ -1.95
VPS35P1-201ENST00000563400 CSAG1Q6PB30 78 aa2.88□□□□□ -1.95
VPS35P1-201ENST00000563400 COX7B2Q8TF08 81 aa2.88□□□□□ -1.95
VPS35P1-201ENST00000563400 TRAV13-2A0A0B4J235 113 aa2.87□□□□□ -1.95
VPS35P1-201ENST00000563400 HCG22E2RYF7 251 aa2.87□□□□□ -1.95
VPS35P1-201ENST00000563400 F8W1H4 67 aa2.87□□□□□ -1.95
VPS35P1-201ENST00000563400 SYS1-DBNDD2H3BUS1 97 aa2.87□□□□□ -1.95
VPS35P1-201ENST00000563400 KRTAP1-4P0C5Y4 121 aa2.87□□□□□ -1.95
VPS35P1-201ENST00000563400 KRTDAPP60985 99 aa2.87□□□□□ -1.95
VPS35P1-201ENST00000563400 C1orf137Q5JT78 98 aa2.87□□□□□ -1.95
VPS35P1-201ENST00000563400 PPDPFLQ8WWR9 84 aa2.87□□□□□ -1.95
VPS35P1-201ENST00000563400 TRBV7-7A0A0K0K1E9 115 aa2.86□□□□□ -1.95
VPS35P1-201ENST00000563400 TRBV10-3A0A0K0K1G6 114 aa2.86□□□□□ -1.95
VPS35P1-201ENST00000563400 Q6ZRN7 208 aaPredicted RBP2.86□□□□□ -1.95
VPS35P1-201ENST00000563400 SPACA4Q8TDM5 124 aa2.86□□□□□ -1.95
VPS35P1-201ENST00000563400 DEFB104AQ8WTQ1 72 aa2.86□□□□□ -1.95
VPS35P1-201ENST00000563400 CYSTM1Q9H1C7 97 aa2.86□□□□□ -1.95
VPS35P1-201ENST00000563400 CDKN2A-AS1Q9UH64 79 aa2.86□□□□□ -1.95
VPS35P1-201ENST00000563400 ATOX1O00244 68 aa2.85□□□□□ -1.95
VPS35P1-201ENST00000563400 LINC00158P58513 81 aa2.85□□□□□ -1.95
VPS35P1-201ENST00000563400 LIMD2Q9BT23 127 aa2.85□□□□□ -1.95
VPS35P1-201ENST00000563400 ANAPC11Q9NYG5 84 aa2.85□□□□□ -1.95
VPS35P1-201ENST00000563400 COL7A1Q02388 2944 aa2.84□□□□□ -1.95
VPS35P1-201ENST00000563400 LCE1FQ5T754 118 aa2.84□□□□□ -1.95
VPS35P1-201ENST00000563400 DNAH3Q8TD57 4116 aa2.83□□□□□ -1.96
VPS35P1-201ENST00000563400 COX6A2Q02221 97 aa2.83□□□□□ -1.96
VPS35P1-201ENST00000563400 UQCR10Q9UDW1 63 aa2.83□□□□□ -1.96
VPS35P1-201ENST00000563400 CMYA5Q8N3K9 4069 aa2.83□□□□□ -1.96
VPS35P1-201ENST00000563400 A0A1W2PNN7 141 aa2.83□□□□□ -1.96
VPS35P1-201ENST00000563400 C3orf79P0CE67 100 aa2.83□□□□□ -1.96
VPS35P1-201ENST00000563400 CDC42SE1Q9NRR8 79 aa2.83□□□□□ -1.96
VPS35P1-201ENST00000563400 ZNF815PA8K554 130 aa2.82□□□□□ -1.96
VPS35P1-201ENST00000563400 KRTAP10-5P60370 271 aa2.82□□□□□ -1.96
VPS35P1-201ENST00000563400 DNAH9Q9NYC9 4486 aa2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 93.6 ms