RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 COPS9Q8WXC6 57 aa8.44□□□□□ -1.06
CLK3-211ENST00000563297 FSIP2Q5CZC0 6907 aa8.44□□□□□ -1.06
CLK3-211ENST00000563297 TSTD3H0UI37 97 aa8.43□□□□□ -1.06
CLK3-211ENST00000563297 Q6ZVH6 145 aa8.43□□□□□ -1.06
CLK3-211ENST00000563297 CFC1BP0CG36 223 aa8.42□□□□□ -1.06
CLK3-211ENST00000563297 C14orf144Q96I85 54 aa8.42□□□□□ -1.06
CLK3-211ENST00000563297 A4D1N5 150 aa8.41□□□□□ -1.06
CLK3-211ENST00000563297 COX8AP10176 69 aa8.4□□□□□ -1.06
CLK3-211ENST00000563297 RPL37P61927 97 aaKnown RBP8.4□□□□□ -1.06
CLK3-211ENST00000563297 PCP2Q8IVA1 136 aa8.4□□□□□ -1.06
CLK3-211ENST00000563297 SMIM11BQ8TCY0 68 aa8.4□□□□□ -1.06
CLK3-211ENST00000563297 UQCR10Q9UDW1 63 aa8.39□□□□□ -1.07
CLK3-211ENST00000563297 TRAV13-2A0A0B4J235 113 aa8.38□□□□□ -1.07
CLK3-211ENST00000563297 LORP23490 312 aaPredicted RBP8.38□□□□□ -1.07
CLK3-211ENST00000563297 NHP2Q9NX24 153 aaKnown RBP8.38□□□□□ -1.07
CLK3-211ENST00000563297 PCP4L1A6NKN8 68 aa8.37□□□□□ -1.07
CLK3-211ENST00000563297 KRTAP10-6P60371 365 aaPredicted RBP8.37□□□□□ -1.07
CLK3-211ENST00000563297 DLEU1O43261 78 aa8.36□□□□□ -1.07
CLK3-211ENST00000563297 TCL1BO95988 128 aa8.35□□□□□ -1.07
CLK3-211ENST00000563297 FLGP20930 4061 aaPredicted RBP8.32□□□□□ -1.08
CLK3-211ENST00000563297 LINC00575Q6W349 94 aa8.32□□□□□ -1.08
CLK3-211ENST00000563297 M0R2T5 61 aa8.31□□□□□ -1.08
CLK3-211ENST00000563297 VAMP3Q15836 100 aa8.31□□□□□ -1.08
CLK3-211ENST00000563297 F8WEM9 126 aa8.3□□□□□ -1.08
CLK3-211ENST00000563297 COX6B2Q6YFQ2 88 aa8.3□□□□□ -1.08
CLK3-211ENST00000563297 HIGD1BQ9P298 99 aa8.29□□□□□ -1.08
CLK3-211ENST00000563297 hADV29S1A0JD25 119 aa8.28□□□□□ -1.08
CLK3-211ENST00000563297 Q6ZQY7 126 aa8.28□□□□□ -1.08
CLK3-211ENST00000563297 Q6JHZ5 121 aa8.27□□□□□ -1.09
CLK3-211ENST00000563297 HIST1H4GQ99525 98 aa8.27□□□□□ -1.09
CLK3-211ENST00000563297 TRBV7-7A0A0K0K1E9 115 aa8.26□□□□□ -1.09
CLK3-211ENST00000563297 OCIAD2Q56VL3 154 aa8.26□□□□□ -1.09
CLK3-211ENST00000563297 IGFL1Q6UW32 110 aa8.26□□□□□ -1.09
CLK3-211ENST00000563297 C2orf91Q6ZV80 131 aa8.26□□□□□ -1.09
CLK3-211ENST00000563297 CLEC2BQ92478 149 aa8.25□□□□□ -1.09
CLK3-211ENST00000563297 HSD52Q0P140 79 aa8.24□□□□□ -1.09
CLK3-211ENST00000563297 M0R143 59 aa8.22□□□□□ -1.09
CLK3-211ENST00000563297 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.21□□□□□ -1.1
CLK3-211ENST00000563297 OBSCN-AS1Q96MR7 158 aa8.21□□□□□ -1.1
CLK3-211ENST00000563297 BATFQ16520 125 aa8.2□□□□□ -1.1
CLK3-211ENST00000563297 ATP11AUNQ6ZP68 121 aa8.2□□□□□ -1.1
CLK3-211ENST00000563297 Q75L30 129 aa8.2□□□□□ -1.1
CLK3-211ENST00000563297 CEND1Q8N111 149 aa8.2□□□□□ -1.1
CLK3-211ENST00000563297 PPDPFLQ8WWR9 84 aa8.18□□□□□ -1.1
CLK3-211ENST00000563297 SNHG12Q9BXW3 62 aa8.18□□□□□ -1.1
CLK3-211ENST00000563297 TMEM238LA0A1B0GVL6 79 aa8.17□□□□□ -1.1
CLK3-211ENST00000563297 A6NJY4 79 aa8.17□□□□□ -1.1
CLK3-211ENST00000563297 BVES-AS1Q5T3Y7 98 aa8.17□□□□□ -1.1
CLK3-211ENST00000563297 LST1O00453 97 aa8.16□□□□□ -1.1
CLK3-211ENST00000563297 Q6Q795 121 aa8.16□□□□□ -1.1
CLK3-211ENST00000563297 H3BUT2 72 aa8.15□□□□□ -1.1
CLK3-211ENST00000563297 Q96NJ1 140 aa8.14□□□□□ -1.11
CLK3-211ENST00000563297 FXYD2P54710 66 aa8.13□□□□□ -1.11
CLK3-211ENST00000563297 RAB37Q96AX2 223 aa8.12□□□□□ -1.11
CLK3-211ENST00000563297 COL5A1-AS1Q5SY13 56 aa8.1□□□□□ -1.11
CLK3-211ENST00000563297 CFC1P0CG37 223 aa8.09□□□□□ -1.11
CLK3-211ENST00000563297 C20orf166-AS1Q96NR2 134 aa8.09□□□□□ -1.11
CLK3-211ENST00000563297 TEN1Q86WV5 123 aa8.08□□□□□ -1.12
CLK3-211ENST00000563297 SS18L2Q9UHA2 77 aa8.08□□□□□ -1.12
CLK3-211ENST00000563297 A8MUU9 505 aa8.07□□□□□ -1.12
CLK3-211ENST00000563297 NDUFV3P56181 108 aaKnown RBP8.07□□□□□ -1.12
CLK3-211ENST00000563297 H0YGX0 51 aa8.06□□□□□ -1.12
CLK3-211ENST00000563297 FAM218AQ96MZ4 157 aa8.06□□□□□ -1.12
CLK3-211ENST00000563297 PRO1854Q9UHT4 67 aa8.06□□□□□ -1.12
CLK3-211ENST00000563297 A0A0B4J2C4 111 aa8.05□□□□□ -1.12
CLK3-211ENST00000563297 K7ERJ3 54 aa8.05□□□□□ -1.12
CLK3-211ENST00000563297 SNCGO76070 127 aa8.04□□□□□ -1.12
CLK3-211ENST00000563297 KRTAP9-8Q9BYQ0 159 aa8.04□□□□□ -1.12
CLK3-211ENST00000563297 A0A087WSZ3 146 aa8.03□□□□□ -1.12
CLK3-211ENST00000563297 H3BMG7 143 aa8.01□□□□□ -1.13
CLK3-211ENST00000563297 TAX1BP3O14907 124 aa8.01□□□□□ -1.13
CLK3-211ENST00000563297 TRBV20-1A0A075B6N2 111 aa8□□□□□ -1.13
CLK3-211ENST00000563297 PSMB2P49721 201 aa8□□□□□ -1.13
CLK3-211ENST00000563297 C9orf118A6NHY6 69 aa7.99□□□□□ -1.13
CLK3-211ENST00000563297 DSCR10P59022 87 aa7.99□□□□□ -1.13
CLK3-211ENST00000563297 SCGB1C2P0DMR2 95 aa7.98□□□□□ -1.13
CLK3-211ENST00000563297 A0A1B0GX51 115 aa7.97□□□□□ -1.13
CLK3-211ENST00000563297 A0A1W2PNM2 257 aa7.97□□□□□ -1.13
CLK3-211ENST00000563297 KRTAP16-1A8MUX0 517 aa7.97□□□□□ -1.13
CLK3-211ENST00000563297 FABP2P12104 132 aa7.97□□□□□ -1.13
CLK3-211ENST00000563297 NAA38Q9BRA0 125 aaKnown RBP7.97□□□□□ -1.13
CLK3-211ENST00000563297 GHRHP01286 108 aa7.96□□□□□ -1.14
CLK3-211ENST00000563297 COX6CP09669 75 aa7.96□□□□□ -1.14
CLK3-211ENST00000563297 USH2AO75445 5202 aa7.94□□□□□ -1.14
CLK3-211ENST00000563297 LINC00313P59037 77 aa7.94□□□□□ -1.14
CLK3-211ENST00000563297 LYRM7Q5U5X0 104 aa7.93□□□□□ -1.14
CLK3-211ENST00000563297 SIGMAR1Q99720 223 aa7.93□□□□□ -1.14
CLK3-211ENST00000563297 A0A1W2PPM0 123 aa7.92□□□□□ -1.14
CLK3-211ENST00000563297 IGKV4-1P06312 121 aa7.91□□□□□ -1.14
CLK3-211ENST00000563297 SSPOA2VEC9 5147 aa7.91□□□□□ -1.14
CLK3-211ENST00000563297 A0A1B0GV90 55 aa7.9□□□□□ -1.14
CLK3-211ENST00000563297 TRIAP1O43715 76 aa7.9□□□□□ -1.14
CLK3-211ENST00000563297 TRBV7-4A0A0J9YYF1 115 aa7.89□□□□□ -1.15
CLK3-211ENST00000563297 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.89□□□□□ -1.15
CLK3-211ENST00000563297 NOTCH2NLQ7Z3S9 236 aa7.89□□□□□ -1.15
CLK3-211ENST00000563297 ANKRD29Q8N6D5 301 aa7.89□□□□□ -1.15
CLK3-211ENST00000563297 MT2AP02795 61 aa7.88□□□□□ -1.15
CLK3-211ENST00000563297 FAM236DA0A1B0GTK5 79 aa7.87□□□□□ -1.15
CLK3-211ENST00000563297 FAM236CP0DP71 79 aa7.87□□□□□ -1.15
CLK3-211ENST00000563297 GTF2H5Q6ZYL4 71 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms