RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 LINC00304Q8N9R0 145 aa5.81□□□□□ -1.48
VPS39-205ENST00000562258 C5orf47Q569G3 176 aa5.81□□□□□ -1.48
VPS39-205ENST00000562258 PRO0461Q9UI25 63 aa5.81□□□□□ -1.48
VPS39-205ENST00000562258 KRTAP26-1Q6PEX3 210 aa5.81□□□□□ -1.48
VPS39-205ENST00000562258 Q6ZVQ6 151 aa5.8□□□□□ -1.48
VPS39-205ENST00000562258 V9GYY9 64 aa5.8□□□□□ -1.48
VPS39-205ENST00000562258 CASC2Q6XLA1 102 aa5.79□□□□□ -1.48
VPS39-205ENST00000562258 Q8N377 158 aa5.79□□□□□ -1.48
VPS39-205ENST00000562258 CHKB-CPT1BH3BT56 60 aa5.79□□□□□ -1.48
VPS39-205ENST00000562258 Q8NDZ9 215 aa5.79□□□□□ -1.48
VPS39-205ENST00000562258 SNURFQ9Y675 71 aa5.79□□□□□ -1.48
VPS39-205ENST00000562258 IMUPQ9GZP8 106 aa5.78□□□□□ -1.48
VPS39-205ENST00000562258 PLA2G2DQ9UNK4 145 aa5.78□□□□□ -1.48
VPS39-205ENST00000562258 Q5VSD8 79 aa5.77□□□□□ -1.48
VPS39-205ENST00000562258 Q6Q795 121 aa5.77□□□□□ -1.48
VPS39-205ENST00000562258 C9orf92A6NGG3 77 aa5.77□□□□□ -1.49
VPS39-205ENST00000562258 SPRR4Q96PI1 79 aa5.77□□□□□ -1.49
VPS39-205ENST00000562258 FAM240AA0A1B0GVK7 77 aa5.76□□□□□ -1.49
VPS39-205ENST00000562258 VPS13CQ709C8 3753 aa5.76□□□□□ -1.49
VPS39-205ENST00000562258 A0A0U1RQV1 116 aa5.76□□□□□ -1.49
VPS39-205ENST00000562258 FAM236DA0A1B0GTK5 79 aa5.76□□□□□ -1.49
VPS39-205ENST00000562258 FAM236CP0DP71 79 aa5.76□□□□□ -1.49
VPS39-205ENST00000562258 IGKV2D-30A0A075B6S6 120 aa5.75□□□□□ -1.49
VPS39-205ENST00000562258 IGKV2-30P06310 120 aa5.75□□□□□ -1.49
VPS39-205ENST00000562258 IGFL1Q6UW32 110 aa5.75□□□□□ -1.49
VPS39-205ENST00000562258 PLAC8Q9NZF1 115 aa5.75□□□□□ -1.49
VPS39-205ENST00000562258 ATP5EP2Q5VTU8 51 aa5.75□□□□□ -1.49
VPS39-205ENST00000562258 TMEM258P61165 79 aa5.75□□□□□ -1.49
VPS39-205ENST00000562258 SSBP3-AS1Q7Z2R9 100 aa5.74□□□□□ -1.49
VPS39-205ENST00000562258 COX7CP15954 63 aa5.74□□□□□ -1.49
VPS39-205ENST00000562258 LINC00208Q96KT6 92 aa5.74□□□□□ -1.49
VPS39-205ENST00000562258 Q96NJ1 140 aa5.74□□□□□ -1.49
VPS39-205ENST00000562258 HCG22E2RYF7 251 aa5.73□□□□□ -1.49
VPS39-205ENST00000562258 SERP2Q8N6R1 65 aa5.73□□□□□ -1.49
VPS39-205ENST00000562258 ZNF469Q96JG9 3925 aaPredicted RBP5.73□□□□□ -1.49
VPS39-205ENST00000562258 BRK1Q8WUW1 75 aa5.72□□□□□ -1.49
VPS39-205ENST00000562258 Q6ZRN7 208 aaPredicted RBP5.72□□□□□ -1.49
VPS39-205ENST00000562258 PCOTHQ58A44 107 aa5.72□□□□□ -1.49
VPS39-205ENST00000562258 Q6ZQT0 140 aa5.72□□□□□ -1.49
VPS39-205ENST00000562258 ANK3Q12955 4377 aaKnown RBP5.72□□□□□ -1.49
VPS39-205ENST00000562258 MPLKIPQ8TAP9 179 aa5.71□□□□□ -1.5
VPS39-205ENST00000562258 LINC00313P59037 77 aa5.7□□□□□ -1.5
VPS39-205ENST00000562258 OBSCN-AS1Q96MR7 158 aa5.7□□□□□ -1.5
VPS39-205ENST00000562258 IGLV5-37A0A075B6J1 123 aa5.7□□□□□ -1.5
VPS39-205ENST00000562258 SEC61GP60059 68 aa5.7□□□□□ -1.5
VPS39-205ENST00000562258 SPAG11AQ6PDA7 123 aa5.69□□□□□ -1.5
VPS39-205ENST00000562258 SPINK1P00995 79 aa5.68□□□□□ -1.5
VPS39-205ENST00000562258 hDV103S1A0JD37 113 aa5.68□□□□□ -1.5
VPS39-205ENST00000562258 DSCR10P59022 87 aa5.67□□□□□ -1.5
VPS39-205ENST00000562258 TRBV7-4A0A0J9YYF1 115 aa5.67□□□□□ -1.5
VPS39-205ENST00000562258 ATP11AUNQ6ZP68 121 aa5.66□□□□□ -1.5
VPS39-205ENST00000562258 TRBV7-7A0A0K0K1E9 115 aa5.65□□□□□ -1.51
VPS39-205ENST00000562258 SMIM29Q86T20 159 aa5.65□□□□□ -1.51
VPS39-205ENST00000562258 A0A1W2PNM2 257 aa5.65□□□□□ -1.51
VPS39-205ENST00000562258 K7EQZ3 153 aa5.64□□□□□ -1.51
VPS39-205ENST00000562258 COX6B2Q6YFQ2 88 aa5.64□□□□□ -1.51
VPS39-205ENST00000562258 LOC110117498A0A087WWA1 95 aa5.63□□□□□ -1.51
VPS39-205ENST00000562258 IGLV7-46A0A075B6I9 117 aa5.63□□□□□ -1.51
VPS39-205ENST00000562258 H0Y9P7 68 aa5.63□□□□□ -1.51
VPS39-205ENST00000562258 C1orf195Q5TG92 126 aa5.62□□□□□ -1.51
VPS39-205ENST00000562258 MEGF8Q7Z7M0 2845 aa5.61□□□□□ -1.51
VPS39-205ENST00000562258 KRTAP11-1Q8IUC1 163 aa5.61□□□□□ -1.51
VPS39-205ENST00000562258 SPRR1AP35321 89 aa5.6□□□□□ -1.51
VPS39-205ENST00000562258 CXCL6P80162 114 aa5.59□□□□□ -1.51
VPS39-205ENST00000562258 A8MWP4 228 aa5.59□□□□□ -1.52
VPS39-205ENST00000562258 TRAV7A0A075B6U4 112 aa5.58□□□□□ -1.52
VPS39-205ENST00000562258 NDUFC1O43677 76 aa5.58□□□□□ -1.52
VPS39-205ENST00000562258 C1orf64Q8NEQ6 169 aa5.58□□□□□ -1.52
VPS39-205ENST00000562258 IGLV5-48A0A075B6I7 105 aa5.57□□□□□ -1.52
VPS39-205ENST00000562258 A0A1B0GW54 56 aa5.56□□□□□ -1.52
VPS39-205ENST00000562258 A0A087X002 238 aa5.56□□□□□ -1.52
VPS39-205ENST00000562258 MRPL34Q9BQ48 92 aaKnown RBP5.55□□□□□ -1.52
VPS39-205ENST00000562258 SMIM26A0A096LP01 95 aa5.55□□□□□ -1.52
VPS39-205ENST00000562258 A0A1B0GVX0 72 aa5.55□□□□□ -1.52
VPS39-205ENST00000562258 FAM229BQ4G0N7 80 aa5.55□□□□□ -1.52
VPS39-205ENST00000562258 C8orf17Q9NRJ1 99 aa5.55□□□□□ -1.52
VPS39-205ENST00000562258 PRR15Q8IV56 129 aa5.55□□□□□ -1.52
VPS39-205ENST00000562258 KRTAP7-1Q8IUC3 87 aa5.54□□□□□ -1.52
VPS39-205ENST00000562258 ATP5EP56381 51 aaPredicted RBP5.54□□□□□ -1.52
VPS39-205ENST00000562258 SPTSSBQ8NFR3 76 aa5.54□□□□□ -1.52
VPS39-205ENST00000562258 SERP1Q9Y6X1 66 aa5.54□□□□□ -1.52
VPS39-205ENST00000562258 TMEM254Q8TBM7 123 aa5.53□□□□□ -1.52
VPS39-205ENST00000562258 C8orf87E5RJ46 101 aa5.52□□□□□ -1.53
VPS39-205ENST00000562258 C4orf26Q17RF5 130 aa5.52□□□□□ -1.53
VPS39-205ENST00000562258 DNHD1Q96M86 4753 aa5.51□□□□□ -1.53
VPS39-205ENST00000562258 TRAV22A0A0B4J277 110 aa5.51□□□□□ -1.53
VPS39-205ENST00000562258 C7orf65Q6ZTY9 151 aa5.51□□□□□ -1.53
VPS39-205ENST00000562258 TP53AIP1Q9HCN2 124 aa5.5□□□□□ -1.53
VPS39-205ENST00000562258 Q6ZSA8 131 aa5.48□□□□□ -1.53
VPS39-205ENST00000562258 PSPHP1O15172 72 aa5.48□□□□□ -1.53
VPS39-205ENST00000562258 Q8N1X5 172 aa5.48□□□□□ -1.53
VPS39-205ENST00000562258 KRTAP4-16G5E9R7 235 aaPredicted RBP5.48□□□□□ -1.53
VPS39-205ENST00000562258 RPS28P62857 69 aaKnown RBP5.47□□□□□ -1.53
VPS39-205ENST00000562258 AKAP9Q99996 3911 aa5.46□□□□□ -1.54
VPS39-205ENST00000562258 CD164Q04900 197 aa5.45□□□□□ -1.54
VPS39-205ENST00000562258 SPRR1BP22528 89 aa5.45□□□□□ -1.54
VPS39-205ENST00000562258 PRO0628Q9UI54 55 aa5.45□□□□□ -1.54
VPS39-205ENST00000562258 IGLV8-61A0A075B6I0 122 aa5.42□□□□□ -1.54
VPS39-205ENST00000562258 A6NED7 52 aa5.42□□□□□ -1.54
VPS39-205ENST00000562258 M0R2T5 61 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 108 ms