RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 HIST3H2BBQ8N257 126 aa10.13□□□□□ -0.79
VPS35-202ENST00000561713 HIST1H2BLQ99880 126 aa10.13□□□□□ -0.79
VPS35-202ENST00000561713 C12orf57Q99622 126 aa10.12□□□□□ -0.79
VPS35-202ENST00000561713 LINC00575Q6W349 94 aa10.11□□□□□ -0.79
VPS35-202ENST00000561713 TCL1BO95988 128 aa10.09□□□□□ -0.79
VPS35-202ENST00000561713 SNRPEP62304 92 aaKnown RBP10.09□□□□□ -0.79
VPS35-202ENST00000561713 S100A2P29034 98 aa10.08□□□□□ -0.8
VPS35-202ENST00000561713 VAMP3Q15836 100 aa10.08□□□□□ -0.8
VPS35-202ENST00000561713 hADV29S1A0JD25 119 aa10.07□□□□□ -0.8
VPS35-202ENST00000561713 HSBP1L1C9JCN9 74 aa10.07□□□□□ -0.8
VPS35-202ENST00000561713 IGFL1Q6UW32 110 aa10.07□□□□□ -0.8
VPS35-202ENST00000561713 CLEC2BQ92478 149 aa10.05□□□□□ -0.8
VPS35-202ENST00000561713 TRBV7-7A0A0K0K1E9 115 aa10.04□□□□□ -0.8
VPS35-202ENST00000561713 COX6B2Q6YFQ2 88 aa10.04□□□□□ -0.8
VPS35-202ENST00000561713 H3BUT2 72 aa10.01□□□□□ -0.81
VPS35-202ENST00000561713 Q6JHZ5 121 aa10.01□□□□□ -0.81
VPS35-202ENST00000561713 HIST1H4GQ99525 98 aa10□□□□□ -0.81
VPS35-202ENST00000561713 OCIAD2Q56VL3 154 aa9.99□□□□□ -0.81
VPS35-202ENST00000561713 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.98□□□□□ -0.81
VPS35-202ENST00000561713 OBSCN-AS1Q96MR7 158 aa9.98□□□□□ -0.81
VPS35-202ENST00000561713 SCGB1D1O95968 90 aa9.96□□□□□ -0.82
VPS35-202ENST00000561713 S100A6P06703 90 aa9.96□□□□□ -0.82
VPS35-202ENST00000561713 COX8AP10176 69 aa9.94□□□□□ -0.82
VPS35-202ENST00000561713 BVES-AS1Q5T3Y7 98 aa9.94□□□□□ -0.82
VPS35-202ENST00000561713 KRTAP9-7A8MTY7 169 aa9.93□□□□□ -0.82
VPS35-202ENST00000561713 SNHG12Q9BXW3 62 aa9.93□□□□□ -0.82
VPS35-202ENST00000561713 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.92□□□□□ -0.82
VPS35-202ENST00000561713 SSPOA2VEC9 5147 aa9.91□□□□□ -0.82
VPS35-202ENST00000561713 USH2AO75445 5202 aa9.91□□□□□ -0.82
VPS35-202ENST00000561713 FAM218AQ96MZ4 157 aa9.9□□□□□ -0.82
VPS35-202ENST00000561713 CFC1P0CG37 223 aa9.89□□□□□ -0.83
VPS35-202ENST00000561713 PPDPFLQ8WWR9 84 aa9.89□□□□□ -0.83
VPS35-202ENST00000561713 C14orf144Q96I85 54 aa9.89□□□□□ -0.83
VPS35-202ENST00000561713 LST1O00453 97 aa9.88□□□□□ -0.83
VPS35-202ENST00000561713 Q6Q795 121 aa9.88□□□□□ -0.83
VPS35-202ENST00000561713 Q75L30 129 aa9.88□□□□□ -0.83
VPS35-202ENST00000561713 RAB37Q96AX2 223 aa9.87□□□□□ -0.83
VPS35-202ENST00000561713 ATP11AUNQ6ZP68 121 aa9.86□□□□□ -0.83
VPS35-202ENST00000561713 PAM16Q9Y3D7 125 aa9.86□□□□□ -0.83
VPS35-202ENST00000561713 DLEU1O43261 78 aa9.85□□□□□ -0.83
VPS35-202ENST00000561713 Q96NJ1 140 aa9.85□□□□□ -0.83
VPS35-202ENST00000561713 S100A1P23297 94 aa9.83□□□□□ -0.84
VPS35-202ENST00000561713 C2orf91Q6ZV80 131 aa9.83□□□□□ -0.84
VPS35-202ENST00000561713 A0A0B4J2C4 111 aa9.82□□□□□ -0.84
VPS35-202ENST00000561713 SPATA45Q537H7 98 aa9.82□□□□□ -0.84
VPS35-202ENST00000561713 A0A087WSZ3 146 aa9.81□□□□□ -0.84
VPS35-202ENST00000561713 NDUFV3P56181 108 aaKnown RBP9.81□□□□□ -0.84
VPS35-202ENST00000561713 SS18L2Q9UHA2 77 aa9.81□□□□□ -0.84
VPS35-202ENST00000561713 HIGD1BQ9P298 99 aa9.79□□□□□ -0.84
VPS35-202ENST00000561713 H0YGX0 51 aa9.77□□□□□ -0.85
VPS35-202ENST00000561713 TEN1Q86WV5 123 aa9.77□□□□□ -0.85
VPS35-202ENST00000561713 VAMP8Q9BV40 100 aa9.77□□□□□ -0.85
VPS35-202ENST00000561713 A0A1B0GV72 72 aa9.76□□□□□ -0.85
VPS35-202ENST00000561713 DSCR10P59022 87 aa9.76□□□□□ -0.85
VPS35-202ENST00000561713 H3BMG7 143 aa9.75□□□□□ -0.85
VPS35-202ENST00000561713 FABP2P12104 132 aa9.75□□□□□ -0.85
VPS35-202ENST00000561713 C20orf166-AS1Q96NR2 134 aa9.75□□□□□ -0.85
VPS35-202ENST00000561713 SIGMAR1Q99720 223 aa9.75□□□□□ -0.85
VPS35-202ENST00000561713 A8MUU9 505 aa9.74□□□□□ -0.85
VPS35-202ENST00000561713 SNCGO76070 127 aa9.74□□□□□ -0.85
VPS35-202ENST00000561713 FXYD2P54710 66 aa9.74□□□□□ -0.85
VPS35-202ENST00000561713 CEND1Q8N111 149 aa9.74□□□□□ -0.85
VPS35-202ENST00000561713 KRTAP9-8Q9BYQ0 159 aa9.74□□□□□ -0.85
VPS35-202ENST00000561713 FCGBPQ9Y6R7 5405 aaPredicted RBP9.73□□□□□ -0.85
VPS35-202ENST00000561713 A0A1W2PNM2 257 aa9.72□□□□□ -0.85
VPS35-202ENST00000561713 TRIAP1O43715 76 aa9.72□□□□□ -0.85
VPS35-202ENST00000561713 PRO1854Q9UHT4 67 aa9.71□□□□□ -0.86
VPS35-202ENST00000561713 TMEM238LA0A1B0GVL6 79 aa9.67□□□□□ -0.86
VPS35-202ENST00000561713 A0A1B0GX51 115 aa9.67□□□□□ -0.86
VPS35-202ENST00000561713 A6NJY4 79 aa9.67□□□□□ -0.86
VPS35-202ENST00000561713 K7ERJ3 54 aa9.67□□□□□ -0.86
VPS35-202ENST00000561713 KRTAP16-1A8MUX0 517 aa9.62□□□□□ -0.87
VPS35-202ENST00000561713 IGKV4-1P06312 121 aa9.62□□□□□ -0.87
VPS35-202ENST00000561713 DEFB116Q30KQ4 102 aa9.62□□□□□ -0.87
VPS35-202ENST00000561713 TRBV20-1A0A075B6N2 111 aa9.61□□□□□ -0.87
VPS35-202ENST00000561713 DNAL4O96015 105 aa9.61□□□□□ -0.87
VPS35-202ENST00000561713 GHRHP01286 108 aa9.61□□□□□ -0.87
VPS35-202ENST00000561713 NOTCH2NLQ7Z3S9 236 aa9.61□□□□□ -0.87
VPS35-202ENST00000561713 ANKRD29Q8N6D5 301 aa9.61□□□□□ -0.87
VPS35-202ENST00000561713 ORMDL1Q9P0S3 153 aa9.61□□□□□ -0.87
VPS35-202ENST00000561713 PSMB2P49721 201 aa9.59□□□□□ -0.87
VPS35-202ENST00000561713 LINC00313P59037 77 aa9.58□□□□□ -0.88
VPS35-202ENST00000561713 HSD52Q0P140 79 aa9.57□□□□□ -0.88
VPS35-202ENST00000561713 TRBV7-4A0A0J9YYF1 115 aa9.56□□□□□ -0.88
VPS35-202ENST00000561713 KRTAP19-1Q8IUB9 90 aa9.56□□□□□ -0.88
VPS35-202ENST00000561713 FAM236DA0A1B0GTK5 79 aa9.55□□□□□ -0.88
VPS35-202ENST00000561713 MT2AP02795 61 aa9.55□□□□□ -0.88
VPS35-202ENST00000561713 FAM236CP0DP71 79 aa9.55□□□□□ -0.88
VPS35-202ENST00000561713 PYY3Q5JQD4 70 aa9.55□□□□□ -0.88
VPS35-202ENST00000561713 CCKP06307 115 aa9.54□□□□□ -0.88
VPS35-202ENST00000561713 IGHV6-1A0A0B4J1U7 121 aa9.53□□□□□ -0.88
VPS35-202ENST00000561713 LCE2BO14633 110 aa9.53□□□□□ -0.88
VPS35-202ENST00000561713 TRACP01848 142 aa9.53□□□□□ -0.88
VPS35-202ENST00000561713 LINC00472Q9H8W2 130 aa9.53□□□□□ -0.88
VPS35-202ENST00000561713 HRES1P13985 223 aa9.51□□□□□ -0.89
VPS35-202ENST00000561713 VPS25Q9BRG1 176 aa9.51□□□□□ -0.89
VPS35-202ENST00000561713 SYNE2Q8WXH0 6885 aaKnown RBP9.49□□□□□ -0.89
VPS35-202ENST00000561713 TMEM256-PLSCR3K7ERE1 68 aa9.49□□□□□ -0.89
VPS35-202ENST00000561713 MT1FP04733 61 aa9.49□□□□□ -0.89
VPS35-202ENST00000561713 MACF1Q9UPN3 7388 aaKnown RBP9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms