RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 TNP1P09430 55 aa8.14□□□□□ -1.11
CSPG4P12-202ENST00000559989 BPTFQ12830 3046 aa8.13□□□□□ -1.11
CSPG4P12-202ENST00000559989 SPTBN4Q9H254 2564 aa8.09□□□□□ -1.11
CSPG4P12-202ENST00000559989 POLQO75417 2590 aa8.08□□□□□ -1.12
CSPG4P12-202ENST00000559989 A8MU10 97 aa8.07□□□□□ -1.12
CSPG4P12-202ENST00000559989 NCOR2Q9Y618 2525 aa8.06□□□□□ -1.12
CSPG4P12-202ENST00000559989 KRTAP29-1A8MX34 341 aaPredicted RBP8.02□□□□□ -1.13
CSPG4P12-202ENST00000559989 ANKRD11Q6UB99 2663 aaPredicted RBP7.99□□□□□ -1.13
CSPG4P12-202ENST00000559989 USP9YO00507 2555 aaPredicted RBP7.98□□□□□ -1.13
CSPG4P12-202ENST00000559989 KRTAP1-3Q8IUG1 177 aa7.98□□□□□ -1.13
CSPG4P12-202ENST00000559989 A0A087X002 238 aa7.98□□□□□ -1.13
CSPG4P12-202ENST00000559989 USP24Q9UPU5 2620 aa7.97□□□□□ -1.13
CSPG4P12-202ENST00000559989 PP632Q6XCG6 107 aa7.97□□□□□ -1.13
CSPG4P12-202ENST00000559989 KRTAP10-1P60331 282 aa7.96□□□□□ -1.13
CSPG4P12-202ENST00000559989 DMBT1Q9UGM3 2413 aaPredicted RBP7.95□□□□□ -1.14
CSPG4P12-202ENST00000559989 RPS29P62273 56 aaKnown RBP7.95□□□□□ -1.14
CSPG4P12-202ENST00000559989 EPG5Q9HCE0 2579 aa7.93□□□□□ -1.14
CSPG4P12-202ENST00000559989 KRTAP1-1Q07627 177 aa7.92□□□□□ -1.14
CSPG4P12-202ENST00000559989 KRTAP11-1Q8IUC1 163 aa7.88□□□□□ -1.15
CSPG4P12-202ENST00000559989 KRTAP10-2P60368 255 aa7.88□□□□□ -1.15
CSPG4P12-202ENST00000559989 LCE6AA0A183 80 aa7.87□□□□□ -1.15
CSPG4P12-202ENST00000559989 KRTAP4-16G5E9R7 235 aaPredicted RBP7.85□□□□□ -1.15
CSPG4P12-202ENST00000559989 NOTCH2NLQ7Z3S9 236 aa7.85□□□□□ -1.15
CSPG4P12-202ENST00000559989 P0C880 135 aa7.84□□□□□ -1.15
CSPG4P12-202ENST00000559989 KRTAP1-5Q9BYS1 174 aa7.83□□□□□ -1.16
CSPG4P12-202ENST00000559989 FASNP49327 2511 aaKnown RBP7.79□□□□□ -1.16
CSPG4P12-202ENST00000559989 SRCAPQ6ZRS2 3230 aa7.76□□□□□ -1.17
CSPG4P12-202ENST00000559989 KRTAP10-8P60410 259 aa7.72□□□□□ -1.17
CSPG4P12-202ENST00000559989 CENPEQ02224 2701 aa7.69□□□□□ -1.18
CSPG4P12-202ENST00000559989 CENPFP49454 3210 aa7.64□□□□□ -1.19
CSPG4P12-202ENST00000559989 Q6ZRN7 208 aaPredicted RBP7.63□□□□□ -1.19
CSPG4P12-202ENST00000559989 PRRC2CQ9Y520 2896 aaKnown RBP7.63□□□□□ -1.19
CSPG4P12-202ENST00000559989 CEP295Q9C0D2 2601 aa7.61□□□□□ -1.19
CSPG4P12-202ENST00000559989 PRO2289Q9P1D8 64 aa7.59□□□□□ -1.19
CSPG4P12-202ENST00000559989 NBEAL1Q6ZS30 2694 aa7.59□□□□□ -1.2
CSPG4P12-202ENST00000559989 CFAP46Q8IYW2 2715 aa7.57□□□□□ -1.2
CSPG4P12-202ENST00000559989 MGAM2Q2M2H8 2515 aa7.55□□□□□ -1.2
CSPG4P12-202ENST00000559989 KRTAP13-2Q52LG2 175 aa7.49□□□□□ -1.21
CSPG4P12-202ENST00000559989 H0YAA0 97 aa7.45□□□□□ -1.22
CSPG4P12-202ENST00000559989 FLNAP21333 2647 aaKnown RBP7.44□□□□□ -1.22
CSPG4P12-202ENST00000559989 AKAP13Q12802 2813 aa7.43□□□□□ -1.22
CSPG4P12-202ENST00000559989 KRTAP13-1Q8IUC0 172 aa7.41□□□□□ -1.22
CSPG4P12-202ENST00000559989 ITPR3Q14573 2671 aa7.4□□□□□ -1.22
CSPG4P12-202ENST00000559989 STAB1Q9NY15 2570 aa7.4□□□□□ -1.22
CSPG4P12-202ENST00000559989 NOTCH1P46531 2555 aa7.39□□□□□ -1.23
CSPG4P12-202ENST00000559989 KMT2BQ9UMN6 2715 aaPredicted RBP7.39□□□□□ -1.23
CSPG4P12-202ENST00000559989 A0A1B0GVY2 172 aa7.38□□□□□ -1.23
CSPG4P12-202ENST00000559989 HECTD1Q9ULT8 2610 aa7.37□□□□□ -1.23
CSPG4P12-202ENST00000559989 STAB2Q8WWQ8 2551 aa7.34□□□□□ -1.24
CSPG4P12-202ENST00000559989 ATRQ13535 2644 aa7.33□□□□□ -1.24
CSPG4P12-202ENST00000559989 KRTAP10-10P60014 251 aa7.32□□□□□ -1.24
CSPG4P12-202ENST00000559989 KRTAP7-1Q8IUC3 87 aa7.31□□□□□ -1.24
CSPG4P12-202ENST00000559989 XP32Q5T750 250 aa7.25□□□□□ -1.25
CSPG4P12-202ENST00000559989 CHD6Q8TD26 2715 aa7.25□□□□□ -1.25
CSPG4P12-202ENST00000559989 EP400Q96L91 3159 aa7.25□□□□□ -1.25
CSPG4P12-202ENST00000559989 MAST4O15021 2626 aa7.22□□□□□ -1.25
CSPG4P12-202ENST00000559989 C5orf42Q9H799 3197 aa7.21□□□□□ -1.26
CSPG4P12-202ENST00000559989 TPRXLQ17RH7 258 aa7.15□□□□□ -1.27
CSPG4P12-202ENST00000559989 KRTAP12-2P59991 146 aa7.12□□□□□ -1.27
CSPG4P12-202ENST00000559989 TEX15Q9BXT5 2789 aa7.12□□□□□ -1.27
CSPG4P12-202ENST00000559989 UNC79Q9P2D8 2635 aa7.12□□□□□ -1.27
CSPG4P12-202ENST00000559989 COL6A5A8TX70 2615 aa7.11□□□□□ -1.27
CSPG4P12-202ENST00000559989 GOLGB1Q14789 3259 aaKnown RBP7.11□□□□□ -1.27
CSPG4P12-202ENST00000559989 CEP350Q5VT06 3117 aa7.09□□□□□ -1.27
CSPG4P12-202ENST00000559989 HELZ2Q9BYK8 2649 aaKnown RBP7.08□□□□□ -1.28
CSPG4P12-202ENST00000559989 GCN1Q92616 2671 aaKnown RBP7.07□□□□□ -1.28
CSPG4P12-202ENST00000559989 KRTAP13-4Q3LI77 160 aa7.05□□□□□ -1.28
CSPG4P12-202ENST00000559989 DNAH12Q6ZR08 3092 aa7.03□□□□□ -1.28
CSPG4P12-202ENST00000559989 APCP25054 2843 aa7.03□□□□□ -1.28
CSPG4P12-202ENST00000559989 INE1O15225 51 aa7□□□□□ -1.29
CSPG4P12-202ENST00000559989 A0A0C4DFX4 3053 aa6.97□□□□□ -1.29
CSPG4P12-202ENST00000559989 KRTAP15-1Q3LI76 137 aa6.96□□□□□ -1.3
CSPG4P12-202ENST00000559989 KRTAP1-4P0C5Y4 121 aa6.95□□□□□ -1.3
CSPG4P12-202ENST00000559989 CFAP54Q96N23 3096 aa6.93□□□□□ -1.3
CSPG4P12-202ENST00000559989 ITPR2Q14571 2701 aa6.92□□□□□ -1.3
CSPG4P12-202ENST00000559989 IGSF10Q6WRI0 2623 aa6.9□□□□□ -1.3
CSPG4P12-202ENST00000559989 FLNBO75369 2602 aaKnown RBP6.9□□□□□ -1.3
CSPG4P12-202ENST00000559989 TEP1Q99973 2627 aaKnown RBP6.9□□□□□ -1.3
CSPG4P12-202ENST00000559989 KRTAP13-3Q3SY46 172 aa6.89□□□□□ -1.31
CSPG4P12-202ENST00000559989 PCNTO95613 3336 aa6.88□□□□□ -1.31
CSPG4P12-202ENST00000559989 UTRNP46939 3433 aa6.84□□□□□ -1.31
CSPG4P12-202ENST00000559989 NSD1Q96L73 2696 aaPredicted RBP6.83□□□□□ -1.32
CSPG4P12-202ENST00000559989 NBEAL2Q6ZNJ1 2754 aa6.82□□□□□ -1.32
CSPG4P12-202ENST00000559989 UBR5O95071 2799 aaPredicted RBP6.8□□□□□ -1.32
CSPG4P12-202ENST00000559989 KRTAP12-1P59990 96 aa6.79□□□□□ -1.32
CSPG4P12-202ENST00000559989 KRTAP21-3Q3LHN1 58 aa6.77□□□□□ -1.33
CSPG4P12-202ENST00000559989 BAHCC1Q9P281 2608 aa6.77□□□□□ -1.33
CSPG4P12-202ENST00000559989 REV3LO60673 3130 aa6.71□□□□□ -1.33
CSPG4P12-202ENST00000559989 ZNF292O60281 2723 aa6.69□□□□□ -1.34
CSPG4P12-202ENST00000559989 SETXQ7Z333 2677 aaKnown RBP6.66□□□□□ -1.34
CSPG4P12-202ENST00000559989 ITPR1Q14643 2758 aa6.63□□□□□ -1.35
CSPG4P12-202ENST00000559989 WDFY4Q6ZS81 3184 aa6.6□□□□□ -1.35
CSPG4P12-202ENST00000559989 FRYQ5TBA9 3013 aa6.55□□□□□ -1.36
CSPG4P12-202ENST00000559989 LAMA2P24043 3122 aaKnown RBP6.55□□□□□ -1.36
CSPG4P12-202ENST00000559989 FREM2Q5SZK8 3169 aa6.54□□□□□ -1.36
CSPG4P12-202ENST00000559989 MGAQ8IWI9 3026 aa6.54□□□□□ -1.36
CSPG4P12-202ENST00000559989 MAP1AP78559 2803 aaPredicted RBP6.54□□□□□ -1.36
CSPG4P12-202ENST00000559989 TRIOO75962 3097 aa6.54□□□□□ -1.36
CSPG4P12-202ENST00000559989 UTP20O75691 2785 aaKnown RBP6.54□□□□□ -1.36
CSPG4P12-202ENST00000559989 UNC80Q8N2C7 3258 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms