RNA–Protein interactions for RNA: ENST00000558768.5

TRPM1-208, Transcript of transient receptor potential cation channel subfamily M member 1, human

APPRIS ALT2 TSL 1 (best)

Gene TRPM1, Length 4,581 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRPM1-208	ENST00000558768	CNBP	P62633	177 aa	Known RBP	6.13	□□□□□ -1.43
TRPM1-208	ENST00000558768	FREM2	Q5SZK8	3169 aa		6.12	□□□□□ -1.43
TRPM1-208	ENST00000558768	WDFY4	Q6ZS81	3184 aa		6.12	□□□□□ -1.43
TRPM1-208	ENST00000558768		A8MU10	97 aa		6.12	□□□□□ -1.43
TRPM1-208	ENST00000558768	MGA	Q8IWI9	3026 aa		6.12	□□□□□ -1.43
TRPM1-208	ENST00000558768	IGLV5-37	A0A075B6J1	123 aa		6.11	□□□□□ -1.43
TRPM1-208	ENST00000558768	IGLV7-43	P04211	117 aa		6.11	□□□□□ -1.43
TRPM1-208	ENST00000558768	MMP24-AS1	A0A0U1RRL7	71 aa		6.1	□□□□□ -1.43
TRPM1-208	ENST00000558768	RPL37	P61927	97 aa	Known RBP	6.1	□□□□□ -1.43
TRPM1-208	ENST00000558768	REV3L	O60673	3130 aa		6.1	□□□□□ -1.43
TRPM1-208	ENST00000558768	TNP2	Q05952	138 aa		6.1	□□□□□ -1.43
TRPM1-208	ENST00000558768	ZZEF1	O43149	2961 aa		6.09	□□□□□ -1.43
TRPM1-208	ENST00000558768	KALRN	O60229	2985 aa		6.09	□□□□□ -1.43
TRPM1-208	ENST00000558768	ZCCHC13	Q8WW36	166 aa	Known RBP	6.08	□□□□□ -1.44
TRPM1-208	ENST00000558768	NBDY	A0A0U1RRE5	68 aa		6.08	□□□□□ -1.44
TRPM1-208	ENST00000558768	SEC61B	P60468	96 aa	Known RBP	6.08	□□□□□ -1.44
TRPM1-208	ENST00000558768	SPATA8	Q6RVD6	105 aa		6.07	□□□□□ -1.44
TRPM1-208	ENST00000558768	NDUFAF8	A1L188	74 aa		6.06	□□□□□ -1.44
TRPM1-208	ENST00000558768	FASN	P49327	2511 aa	Known RBP	6.06	□□□□□ -1.44
TRPM1-208	ENST00000558768	LINC00304	Q8N9R0	145 aa		6.06	□□□□□ -1.44
TRPM1-208	ENST00000558768	LCE6A	A0A183	80 aa		6.06	□□□□□ -1.44
TRPM1-208	ENST00000558768	KRTAP25-1	Q3LHN0	102 aa		6.06	□□□□□ -1.44
TRPM1-208	ENST00000558768	KRTAP10-9	P60411	292 aa		6.04	□□□□□ -1.44
TRPM1-208	ENST00000558768	TACC2	O95359	2948 aa		6.03	□□□□□ -1.44
TRPM1-208	ENST00000558768	ADGRG4	Q8IZF6	3080 aa		6.03	□□□□□ -1.44
TRPM1-208	ENST00000558768	TNRC18	O15417	2968 aa	Predicted RBP	6.03	□□□□□ -1.44
TRPM1-208	ENST00000558768		A0A087X002	238 aa		6.02	□□□□□ -1.45
TRPM1-208	ENST00000558768	COL6A3	P12111	3177 aa		6.01	□□□□□ -1.45
TRPM1-208	ENST00000558768	C9orf92	A6NGG3	77 aa		6.01	□□□□□ -1.45
TRPM1-208	ENST00000558768	COX6B2	Q6YFQ2	88 aa		5.99	□□□□□ -1.45
TRPM1-208	ENST00000558768	ANAPC11	Q9NYG5	84 aa		5.99	□□□□□ -1.45
TRPM1-208	ENST00000558768	LINC00472	Q9H8W2	130 aa		5.98	□□□□□ -1.45
TRPM1-208	ENST00000558768	SPTBN5	Q9NRC6	3674 aa	Known RBP	5.98	□□□□□ -1.45
TRPM1-208	ENST00000558768		Q5W150	140 aa		5.98	□□□□□ -1.45
TRPM1-208	ENST00000558768	SPRR1A	P35321	89 aa		5.96	□□□□□ -1.46
TRPM1-208	ENST00000558768	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	5.96	□□□□□ -1.46
TRPM1-208	ENST00000558768	MYO15A	Q9UKN7	3530 aa		5.96	□□□□□ -1.46
TRPM1-208	ENST00000558768	PSORS1C2	Q9UIG4	136 aa		5.96	□□□□□ -1.46
TRPM1-208	ENST00000558768	H1FX-AS1	Q4G0G2	97 aa		5.96	□□□□□ -1.46
TRPM1-208	ENST00000558768	ADM2	Q7Z4H4	148 aa		5.95	□□□□□ -1.46
TRPM1-208	ENST00000558768	WDFY3	Q8IZQ1	3526 aa		5.95	□□□□□ -1.46
TRPM1-208	ENST00000558768	SMR3A	Q99954	134 aa		5.94	□□□□□ -1.46
TRPM1-208	ENST00000558768	MGAM2	Q2M2H8	2515 aa		5.93	□□□□□ -1.46
TRPM1-208	ENST00000558768	BOD1L1	Q8NFC6	3051 aa		5.93	□□□□□ -1.46
TRPM1-208	ENST00000558768		Q6ZR54	194 aa		5.92	□□□□□ -1.46
TRPM1-208	ENST00000558768	LRBA	P50851	2863 aa		5.91	□□□□□ -1.46
TRPM1-208	ENST00000558768	SPRR1B	P22528	89 aa		5.9	□□□□□ -1.46
TRPM1-208	ENST00000558768	ATR	Q13535	2644 aa		5.9	□□□□□ -1.46
TRPM1-208	ENST00000558768	KRTAP29-1	A8MX34	341 aa	Predicted RBP	5.9	□□□□□ -1.47
TRPM1-208	ENST00000558768	DMXL2	Q8TDJ6	3036 aa		5.89	□□□□□ -1.47
TRPM1-208	ENST00000558768	ZNF292	O60281	2723 aa		5.89	□□□□□ -1.47
TRPM1-208	ENST00000558768	STAB2	Q8WWQ8	2551 aa		5.89	□□□□□ -1.47
TRPM1-208	ENST00000558768	AKAP13	Q12802	2813 aa		5.88	□□□□□ -1.47
TRPM1-208	ENST00000558768	KRTAP26-1	Q6PEX3	210 aa		5.88	□□□□□ -1.47
TRPM1-208	ENST00000558768	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	5.87	□□□□□ -1.47
TRPM1-208	ENST00000558768	CHD6	Q8TD26	2715 aa		5.87	□□□□□ -1.47
TRPM1-208	ENST00000558768		R4GN34	69 aa		5.87	□□□□□ -1.47
TRPM1-208	ENST00000558768	C20orf166-AS1	Q96NR2	134 aa		5.86	□□□□□ -1.47
TRPM1-208	ENST00000558768		A0A087WTM6	91 aa		5.86	□□□□□ -1.47
TRPM1-208	ENST00000558768	LOC400499	M0QZD8	3231 aa		5.85	□□□□□ -1.47
TRPM1-208	ENST00000558768	EYS	Q5T1H1	3165 aa		5.85	□□□□□ -1.47
TRPM1-208	ENST00000558768	ITPR1	Q14643	2758 aa		5.84	□□□□□ -1.47
TRPM1-208	ENST00000558768	MAP1A	P78559	2803 aa	Predicted RBP	5.84	□□□□□ -1.48
TRPM1-208	ENST00000558768	CFAP47	Q6ZTR5	3102 aa		5.83	□□□□□ -1.48
TRPM1-208	ENST00000558768	PLAC4	Q8WY50	150 aa		5.83	□□□□□ -1.48
TRPM1-208	ENST00000558768		S4R3F8	94 aa		5.83	□□□□□ -1.48
TRPM1-208	ENST00000558768	STAB1	Q9NY15	2570 aa		5.83	□□□□□ -1.48
TRPM1-208	ENST00000558768	SPEN	Q96T58	3664 aa	Known RBP	5.83	□□□□□ -1.48
TRPM1-208	ENST00000558768	MAST4	O15021	2626 aa		5.82	□□□□□ -1.48
TRPM1-208	ENST00000558768	CASC10	Q5T4H9	136 aa		5.82	□□□□□ -1.48
TRPM1-208	ENST00000558768	GCN1	Q92616	2671 aa	Known RBP	5.81	□□□□□ -1.48
TRPM1-208	ENST00000558768	KRTAP10-3	P60369	221 aa		5.81	□□□□□ -1.48
TRPM1-208	ENST00000558768	HECTD1	Q9ULT8	2610 aa		5.81	□□□□□ -1.48
TRPM1-208	ENST00000558768	PANO1	I0J062	215 aa		5.8	□□□□□ -1.48
TRPM1-208	ENST00000558768	NBEAL1	Q6ZS30	2694 aa		5.79	□□□□□ -1.48
TRPM1-208	ENST00000558768	KRTAP1-3	Q8IUG1	177 aa		5.79	□□□□□ -1.48
TRPM1-208	ENST00000558768		A8MUU9	505 aa		5.78	□□□□□ -1.48
TRPM1-208	ENST00000558768		Q6ZSA8	131 aa		5.78	□□□□□ -1.48
TRPM1-208	ENST00000558768	NBEAL2	Q6ZNJ1	2754 aa		5.77	□□□□□ -1.49
TRPM1-208	ENST00000558768	HRNR	Q86YZ3	2850 aa	Predicted RBP	5.76	□□□□□ -1.49
TRPM1-208	ENST00000558768	DMXL1	Q9Y485	3027 aa		5.76	□□□□□ -1.49
TRPM1-208	ENST00000558768	NOTCH1	P46531	2555 aa		5.75	□□□□□ -1.49
TRPM1-208	ENST00000558768	DCHS1	Q96JQ0	3298 aa		5.75	□□□□□ -1.49
TRPM1-208	ENST00000558768	KRTAP11-1	Q8IUC1	163 aa		5.75	□□□□□ -1.49
TRPM1-208	ENST00000558768	UNC79	Q9P2D8	2635 aa		5.75	□□□□□ -1.49
TRPM1-208	ENST00000558768	CENPE	Q02224	2701 aa		5.74	□□□□□ -1.49
TRPM1-208	ENST00000558768	FLNA	P21333	2647 aa	Known RBP	5.74	□□□□□ -1.49
TRPM1-208	ENST00000558768		K7EIL1	84 aa		5.74	□□□□□ -1.49
TRPM1-208	ENST00000558768	DMD	P11532	3685 aa		5.74	□□□□□ -1.49
TRPM1-208	ENST00000558768	ATM	Q13315	3056 aa		5.73	□□□□□ -1.49
TRPM1-208	ENST00000558768	KRTAP1-1	Q07627	177 aa		5.71	□□□□□ -1.49
TRPM1-208	ENST00000558768		M0QZ58	72 aa		5.71	□□□□□ -1.5
TRPM1-208	ENST00000558768	TEX15	Q9BXT5	2789 aa		5.69	□□□□□ -1.5
TRPM1-208	ENST00000558768	FLNB	O75369	2602 aa	Known RBP	5.69	□□□□□ -1.5
TRPM1-208	ENST00000558768	WWC2-AS2	Q96NR7	200 aa		5.67	□□□□□ -1.5
TRPM1-208	ENST00000558768	KRTAP7-1	Q8IUC3	87 aa		5.67	□□□□□ -1.5
TRPM1-208	ENST00000558768	ITPR3	Q14573	2671 aa		5.67	□□□□□ -1.5
TRPM1-208	ENST00000558768	HELZ2	Q9BYK8	2649 aa	Known RBP	5.66	□□□□□ -1.5
TRPM1-208	ENST00000558768		J3QL48	77 aa		5.66	□□□□□ -1.5
TRPM1-208	ENST00000558768	PLAC8	Q9NZF1	115 aa		5.66	□□□□□ -1.5

Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms