RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 J3KT08 172 aa4.63□□□□□ -1.67
VPS13C-206ENST00000558338 BPY2O14599 106 aa4.63□□□□□ -1.67
VPS13C-206ENST00000558338 C1orf137Q5JT78 98 aa4.63□□□□□ -1.67
VPS13C-206ENST00000558338 Q8NBF4 154 aa4.63□□□□□ -1.67
VPS13C-206ENST00000558338 STAB1Q9NY15 2570 aa4.63□□□□□ -1.67
VPS13C-206ENST00000558338 A0A096LNI7 61 aa4.62□□□□□ -1.67
VPS13C-206ENST00000558338 SCXQ7RTU7 201 aa4.62□□□□□ -1.67
VPS13C-206ENST00000558338 C3orf84H3BNL1 204 aa4.62□□□□□ -1.67
VPS13C-206ENST00000558338 RPS28P62857 69 aaKnown RBP4.62□□□□□ -1.67
VPS13C-206ENST00000558338 SPRR4Q96PI1 79 aa4.62□□□□□ -1.67
VPS13C-206ENST00000558338 KRTAP1-5Q9BYS1 174 aa4.62□□□□□ -1.67
VPS13C-206ENST00000558338 IGKV4-1P06312 121 aa4.61□□□□□ -1.67
VPS13C-206ENST00000558338 ST20-AS1Q8NBB2 130 aa4.61□□□□□ -1.67
VPS13C-206ENST00000558338 LINC00474Q9P2X8 69 aa4.61□□□□□ -1.67
VPS13C-206ENST00000558338 IGKV2-24A0A0C4DH68 120 aa4.6□□□□□ -1.67
VPS13C-206ENST00000558338 ERC2-IT1O76042 136 aa4.6□□□□□ -1.67
VPS13C-206ENST00000558338 KLKP1Q107X0 134 aa4.6□□□□□ -1.67
VPS13C-206ENST00000558338 C20orf197Q8N268 126 aa4.6□□□□□ -1.67
VPS13C-206ENST00000558338 PKD1L1Q8TDX9 2849 aa4.6□□□□□ -1.67
VPS13C-206ENST00000558338 IGLV9-49A0A0B4J1Y8 123 aa4.6□□□□□ -1.67
VPS13C-206ENST00000558338 A0A1W2PNM2 257 aa4.6□□□□□ -1.67
VPS13C-206ENST00000558338 H0Y9J4 135 aa4.6□□□□□ -1.67
VPS13C-206ENST00000558338 NDUFC1O43677 76 aa4.6□□□□□ -1.67
VPS13C-206ENST00000558338 DYNC2H1Q8NCM8 4307 aaKnown RBP4.6□□□□□ -1.67
VPS13C-206ENST00000558338 IGLV8-61A0A075B6I0 122 aa4.59□□□□□ -1.67
VPS13C-206ENST00000558338 NBDYA0A0U1RRE5 68 aa4.59□□□□□ -1.67
VPS13C-206ENST00000558338 CYSTM1Q9H1C7 97 aa4.59□□□□□ -1.67
VPS13C-206ENST00000558338 PRO0628Q9UI54 55 aa4.59□□□□□ -1.67
VPS13C-206ENST00000558338 A0A1W2PNN7 141 aa4.58□□□□□ -1.68
VPS13C-206ENST00000558338 C9orf163Q8N9P6 203 aa4.58□□□□□ -1.68
VPS13C-206ENST00000558338 FLNBO75369 2602 aaKnown RBP4.58□□□□□ -1.68
VPS13C-206ENST00000558338 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.58□□□□□ -1.68
VPS13C-206ENST00000558338 SMIM29Q86T20 159 aa4.58□□□□□ -1.68
VPS13C-206ENST00000558338 LINC00476Q8WZB0 136 aa4.58□□□□□ -1.68
VPS13C-206ENST00000558338 FAM236DA0A1B0GTK5 79 aa4.57□□□□□ -1.68
VPS13C-206ENST00000558338 FAM236CP0DP71 79 aa4.57□□□□□ -1.68
VPS13C-206ENST00000558338 ATP5EP56381 51 aaPredicted RBP4.57□□□□□ -1.68
VPS13C-206ENST00000558338 LRCOL1A6NCL2 159 aa4.56□□□□□ -1.68
VPS13C-206ENST00000558338 PRLHP81277 87 aa4.56□□□□□ -1.68
VPS13C-206ENST00000558338 C1orf195Q5TG92 126 aa4.56□□□□□ -1.68
VPS13C-206ENST00000558338 DPH3Q96FX2 82 aa4.56□□□□□ -1.68
VPS13C-206ENST00000558338 HIGD2AQ9BW72 106 aa4.56□□□□□ -1.68
VPS13C-206ENST00000558338 DNAH9Q9NYC9 4486 aa4.56□□□□□ -1.68
VPS13C-206ENST00000558338 H7BZZ5 65 aa4.56□□□□□ -1.68
VPS13C-206ENST00000558338 SPRR1BP22528 89 aa4.56□□□□□ -1.68
VPS13C-206ENST00000558338 UBE2AP49459 152 aa4.56□□□□□ -1.68
VPS13C-206ENST00000558338 Q8N9L7 120 aa4.56□□□□□ -1.68
VPS13C-206ENST00000558338 NOTCH1P46531 2555 aa4.55□□□□□ -1.68
VPS13C-206ENST00000558338 IGFL1Q6UW32 110 aa4.55□□□□□ -1.68
VPS13C-206ENST00000558338 PHF5AQ7RTV0 110 aaKnown RBP4.55□□□□□ -1.68
VPS13C-206ENST00000558338 Q6ZRN7 208 aaPredicted RBP4.54□□□□□ -1.68
VPS13C-206ENST00000558338 TMEM254Q8TBM7 123 aa4.54□□□□□ -1.68
VPS13C-206ENST00000558338 OCR1Q9BZK8 76 aa4.54□□□□□ -1.68
VPS13C-206ENST00000558338 COL6A5A8TX70 2615 aa4.54□□□□□ -1.68
VPS13C-206ENST00000558338 EPM2AB3EWF7 344 aa4.54□□□□□ -1.68
VPS13C-206ENST00000558338 CHTF8P0CG12 524 aa4.54□□□□□ -1.68
VPS13C-206ENST00000558338 SNURFQ9Y675 71 aa4.53□□□□□ -1.68
VPS13C-206ENST00000558338 SERP1Q9Y6X1 66 aa4.53□□□□□ -1.68
VPS13C-206ENST00000558338 DSCR10P59022 87 aa4.52□□□□□ -1.69
VPS13C-206ENST00000558338 NBEAL1Q6ZS30 2694 aa4.51□□□□□ -1.69
VPS13C-206ENST00000558338 A0A0U1RQV1 116 aa4.51□□□□□ -1.69
VPS13C-206ENST00000558338 HCG22E2RYF7 251 aa4.51□□□□□ -1.69
VPS13C-206ENST00000558338 SPACA4Q8TDM5 124 aa4.51□□□□□ -1.69
VPS13C-206ENST00000558338 DNAH10Q8IVF4 4471 aa4.5□□□□□ -1.69
VPS13C-206ENST00000558338 A0A087WSZ3 146 aa4.5□□□□□ -1.69
VPS13C-206ENST00000558338 K7EQZ3 153 aa4.5□□□□□ -1.69
VPS13C-206ENST00000558338 A0A087WTM6 91 aa4.49□□□□□ -1.69
VPS13C-206ENST00000558338 LCE6AA0A183 80 aa4.49□□□□□ -1.69
VPS13C-206ENST00000558338 RPL37AP61513 92 aaKnown RBP4.49□□□□□ -1.69
VPS13C-206ENST00000558338 KRTAP13-1Q8IUC0 172 aa4.49□□□□□ -1.69
VPS13C-206ENST00000558338 WWC2-AS2Q96NR7 200 aa4.49□□□□□ -1.69
VPS13C-206ENST00000558338 ZNF706Q9Y5V0 76 aaPredicted RBP4.49□□□□□ -1.69
VPS13C-206ENST00000558338 KRTAP11-1Q8IUC1 163 aa4.49□□□□□ -1.69
VPS13C-206ENST00000558338 IGLV5-52A0A0A0MRZ9 124 aa4.48□□□□□ -1.69
VPS13C-206ENST00000558338 PLECQ15149 4684 aaKnown RBP4.48□□□□□ -1.69
VPS13C-206ENST00000558338 MGAM2Q2M2H8 2515 aa4.48□□□□□ -1.69
VPS13C-206ENST00000558338 RTL8CO15255 209 aa4.47□□□□□ -1.69
VPS13C-206ENST00000558338 LYSTQ99698 3801 aa4.47□□□□□ -1.69
VPS13C-206ENST00000558338 DNAH7Q8WXX0 4024 aa4.46□□□□□ -1.69
VPS13C-206ENST00000558338 A8MWP4 228 aa4.46□□□□□ -1.7
VPS13C-206ENST00000558338 LINC00483Q53H64 154 aa4.46□□□□□ -1.7
VPS13C-206ENST00000558338 Q6ZR54 194 aa4.46□□□□□ -1.7
VPS13C-206ENST00000558338 STAB2Q8WWQ8 2551 aa4.45□□□□□ -1.7
VPS13C-206ENST00000558338 PANO1I0J062 215 aa4.45□□□□□ -1.7
VPS13C-206ENST00000558338 VPS13DQ5THJ4 4388 aa4.45□□□□□ -1.7
VPS13C-206ENST00000558338 A0A0G2JQZ4 141 aa4.45□□□□□ -1.7
VPS13C-206ENST00000558338 PRR15Q8IV56 129 aa4.45□□□□□ -1.7
VPS13C-206ENST00000558338 LINC00472Q9H8W2 130 aa4.45□□□□□ -1.7
VPS13C-206ENST00000558338 PLAC8Q9NZF1 115 aa4.45□□□□□ -1.7
VPS13C-206ENST00000558338 COL7A1Q02388 2944 aa4.44□□□□□ -1.7
VPS13C-206ENST00000558338 SMIM26A0A096LP01 95 aa4.44□□□□□ -1.7
VPS13C-206ENST00000558338 NDUFB1O75438 58 aa4.44□□□□□ -1.7
VPS13C-206ENST00000558338 MP68P56378 58 aa4.44□□□□□ -1.7
VPS13C-206ENST00000558338 H3BPC8 53 aa4.43□□□□□ -1.7
VPS13C-206ENST00000558338 C1orf134Q5TEV5 83 aa4.43□□□□□ -1.7
VPS13C-206ENST00000558338 WFDC13Q8IUB5 93 aa4.43□□□□□ -1.7
VPS13C-206ENST00000558338 ZCCHC13Q8WW36 166 aaKnown RBP4.43□□□□□ -1.7
VPS13C-206ENST00000558338 PMAIP1Q13794 54 aa4.43□□□□□ -1.7
VPS13C-206ENST00000558338 DEFB116Q30KQ4 102 aa4.43□□□□□ -1.7
VPS13C-206ENST00000558338 CASC2Q6XLA1 102 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 123 ms