RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 CHTF8P0CG12 524 aa7.84□□□□□ -1.15
LDLR-205ENST00000557933 DHRS4-AS1Q9P1J3 65 aa7.83□□□□□ -1.16
LDLR-205ENST00000557933 TNP2Q05952 138 aa7.82□□□□□ -1.16
LDLR-205ENST00000557933 DNAH7Q8WXX0 4024 aa7.82□□□□□ -1.16
LDLR-205ENST00000557933 IGFL1Q6UW32 110 aa7.82□□□□□ -1.16
LDLR-205ENST00000557933 LINC00208Q96KT6 92 aa7.8□□□□□ -1.16
LDLR-205ENST00000557933 hDV103S1A0JD37 113 aa7.79□□□□□ -1.16
LDLR-205ENST00000557933 HCG22E2RYF7 251 aa7.79□□□□□ -1.16
LDLR-205ENST00000557933 REG3GQ6UW15 175 aa7.79□□□□□ -1.16
LDLR-205ENST00000557933 KRTAP11-1Q8IUC1 163 aa7.79□□□□□ -1.16
LDLR-205ENST00000557933 ATP5EP56381 51 aaPredicted RBP7.79□□□□□ -1.16
LDLR-205ENST00000557933 DNAH1Q9P2D7 4330 aa7.78□□□□□ -1.16
LDLR-205ENST00000557933 HUWE1Q7Z6Z7 4374 aaKnown RBP7.77□□□□□ -1.17
LDLR-205ENST00000557933 DNAH10OSP0CZ25 163 aa7.77□□□□□ -1.17
LDLR-205ENST00000557933 KRTAP1-5Q9BYS1 174 aa7.77□□□□□ -1.17
LDLR-205ENST00000557933 H3BNG1 76 aa7.76□□□□□ -1.17
LDLR-205ENST00000557933 SPRR1AP35321 89 aa7.76□□□□□ -1.17
LDLR-205ENST00000557933 PHF5AQ7RTV0 110 aaKnown RBP7.76□□□□□ -1.17
LDLR-205ENST00000557933 A8MUN3 132 aa7.75□□□□□ -1.17
LDLR-205ENST00000557933 C1orf195Q5TG92 126 aa7.75□□□□□ -1.17
LDLR-205ENST00000557933 SPRR4Q96PI1 79 aa7.75□□□□□ -1.17
LDLR-205ENST00000557933 K7EIL1 84 aa7.75□□□□□ -1.17
LDLR-205ENST00000557933 UBE2AP49459 152 aa7.73□□□□□ -1.17
LDLR-205ENST00000557933 TRAV22A0A0B4J277 110 aa7.73□□□□□ -1.17
LDLR-205ENST00000557933 FRAS1Q86XX4 4008 aa7.72□□□□□ -1.17
LDLR-205ENST00000557933 ZCCHC13Q8WW36 166 aaKnown RBP7.72□□□□□ -1.17
LDLR-205ENST00000557933 H0Y9J4 135 aa7.71□□□□□ -1.18
LDLR-205ENST00000557933 TLX1NBP0CAT3 122 aa7.71□□□□□ -1.18
LDLR-205ENST00000557933 TGP01266 2768 aa7.7□□□□□ -1.18
LDLR-205ENST00000557933 PCOTHQ58A44 107 aa7.69□□□□□ -1.18
LDLR-205ENST00000557933 B9D2Q9BPU9 175 aa7.68□□□□□ -1.18
LDLR-205ENST00000557933 H0Y9P7 68 aa7.68□□□□□ -1.18
LDLR-205ENST00000557933 MP68P56378 58 aa7.68□□□□□ -1.18
LDLR-205ENST00000557933 CASC2Q6XLA1 102 aa7.68□□□□□ -1.18
LDLR-205ENST00000557933 LCE6AA0A183 80 aa7.67□□□□□ -1.18
LDLR-205ENST00000557933 IGLV9-49A0A0B4J1Y8 123 aa7.67□□□□□ -1.18
LDLR-205ENST00000557933 PANO1I0J062 215 aa7.66□□□□□ -1.18
LDLR-205ENST00000557933 PLA2G2DQ9UNK4 145 aa7.66□□□□□ -1.18
LDLR-205ENST00000557933 IGLV5-37A0A075B6J1 123 aa7.65□□□□□ -1.18
LDLR-205ENST00000557933 CNBPP62633 177 aaKnown RBP7.65□□□□□ -1.18
LDLR-205ENST00000557933 ANAPC11Q9NYG5 84 aa7.65□□□□□ -1.19
LDLR-205ENST00000557933 PLECQ15149 4684 aaKnown RBP7.63□□□□□ -1.19
LDLR-205ENST00000557933 UBE2DNLQ8IWF7 75 aa7.62□□□□□ -1.19
LDLR-205ENST00000557933 SPTSSBQ8NFR3 76 aa7.62□□□□□ -1.19
LDLR-205ENST00000557933 V9GYY9 64 aa7.62□□□□□ -1.19
LDLR-205ENST00000557933 DYNC2H1Q8NCM8 4307 aaKnown RBP7.62□□□□□ -1.19
LDLR-205ENST00000557933 PRR15Q8IV56 129 aa7.62□□□□□ -1.19
LDLR-205ENST00000557933 PRR15LQ9BU68 103 aa7.62□□□□□ -1.19
LDLR-205ENST00000557933 CHKB-CPT1BH3BT56 60 aa7.61□□□□□ -1.19
LDLR-205ENST00000557933 C16orf90A8MZG2 172 aa7.6□□□□□ -1.19
LDLR-205ENST00000557933 NDUFS5O43920 106 aa7.6□□□□□ -1.19
LDLR-205ENST00000557933 Q1T7F1 81 aa7.6□□□□□ -1.19
LDLR-205ENST00000557933 F8WDY8 70 aa7.6□□□□□ -1.19
LDLR-205ENST00000557933 KRTAP29-1A8MX34 341 aaPredicted RBP7.59□□□□□ -1.19
LDLR-205ENST00000557933 Q5VV11 94 aa7.58□□□□□ -1.2
LDLR-205ENST00000557933 A0A1B0GW54 56 aa7.57□□□□□ -1.2
LDLR-205ENST00000557933 FBN3Q75N90 2809 aa7.57□□□□□ -1.2
LDLR-205ENST00000557933 CYP4F30PQ9H0H9 118 aa7.55□□□□□ -1.2
LDLR-205ENST00000557933 LINC00472Q9H8W2 130 aa7.55□□□□□ -1.2
LDLR-205ENST00000557933 IGHV6-1A0A0B4J1U7 121 aa7.55□□□□□ -1.2
LDLR-205ENST00000557933 A8MWP4 228 aa7.55□□□□□ -1.2
LDLR-205ENST00000557933 PMAIP1Q13794 54 aa7.55□□□□□ -1.2
LDLR-205ENST00000557933 DNHD1Q96M86 4753 aa7.54□□□□□ -1.2
LDLR-205ENST00000557933 NDUFB1O75438 58 aa7.54□□□□□ -1.2
LDLR-205ENST00000557933 SPAG11AQ6PDA7 123 aa7.54□□□□□ -1.2
LDLR-205ENST00000557933 SEC61GP60059 68 aa7.54□□□□□ -1.2
LDLR-205ENST00000557933 Q8N9P0 234 aaPredicted RBP7.54□□□□□ -1.2
LDLR-205ENST00000557933 SPINK6Q6UWN8 80 aa7.53□□□□□ -1.2
LDLR-205ENST00000557933 KMT2AQ03164 3969 aa7.53□□□□□ -1.2
LDLR-205ENST00000557933 A0A087X002 238 aa7.52□□□□□ -1.21
LDLR-205ENST00000557933 MMP24-AS1A0A0U1RRL7 71 aa7.52□□□□□ -1.21
LDLR-205ENST00000557933 NOTCH2NLQ7Z3S9 236 aa7.52□□□□□ -1.21
LDLR-205ENST00000557933 COA5Q86WW8 74 aa7.52□□□□□ -1.21
LDLR-205ENST00000557933 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.51□□□□□ -1.21
LDLR-205ENST00000557933 MEGF8Q7Z7M0 2845 aa7.51□□□□□ -1.21
LDLR-205ENST00000557933 A6NED7 52 aa7.51□□□□□ -1.21
LDLR-205ENST00000557933 CD164Q04900 197 aa7.5□□□□□ -1.21
LDLR-205ENST00000557933 IGLV8-61A0A075B6I0 122 aa7.49□□□□□ -1.21
LDLR-205ENST00000557933 STARD9Q9P2P6 4700 aa7.49□□□□□ -1.21
LDLR-205ENST00000557933 MOBPQ13875 183 aa7.48□□□□□ -1.21
LDLR-205ENST00000557933 DNAH8Q96JB1 4490 aa7.48□□□□□ -1.21
LDLR-205ENST00000557933 NUPR2A6NF83 97 aa7.47□□□□□ -1.21
LDLR-205ENST00000557933 RETNLBQ9BQ08 111 aa7.47□□□□□ -1.21
LDLR-205ENST00000557933 LCA10Q71F78 164 aa7.47□□□□□ -1.21
LDLR-205ENST00000557933 C9orf163Q8N9P6 203 aa7.47□□□□□ -1.21
LDLR-205ENST00000557933 PRKDCP78527 4128 aaKnown RBP7.46□□□□□ -1.21
LDLR-205ENST00000557933 Q96NJ1 140 aa7.44□□□□□ -1.22
LDLR-205ENST00000557933 APLNQ9ULZ1 77 aa7.44□□□□□ -1.22
LDLR-205ENST00000557933 HECTD4Q9Y4D8 3996 aa7.43□□□□□ -1.22
LDLR-205ENST00000557933 PRR26Q8N8Z3 221 aa7.41□□□□□ -1.22
LDLR-205ENST00000557933 C8orf17Q9NRJ1 99 aa7.41□□□□□ -1.22
LDLR-205ENST00000557933 DNAH17Q9UFH2 4485 aa7.41□□□□□ -1.22
LDLR-205ENST00000557933 SPANXA2-OT1Q8N9U9 137 aa7.4□□□□□ -1.22
LDLR-205ENST00000557933 DNAH6Q9C0G6 4158 aa7.4□□□□□ -1.23
LDLR-205ENST00000557933 DNAH2Q9P225 4427 aa7.39□□□□□ -1.23
LDLR-205ENST00000557933 SPRR1BP22528 89 aa7.39□□□□□ -1.23
LDLR-205ENST00000557933 SPINK7P58062 85 aa7.39□□□□□ -1.23
LDLR-205ENST00000557933 LIMD2Q9BT23 127 aa7.39□□□□□ -1.23
LDLR-205ENST00000557933 IGLV7-46A0A075B6I9 117 aa7.38□□□□□ -1.23
LDLR-205ENST00000557933 CDK2AP2O75956 126 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 145.3 ms