RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 PRR4Q16378 134 aa1.82□□□□□ -2.12
SLIRP-208ENST00000556956 CASC2Q6XLA1 102 aa1.82□□□□□ -2.12
SLIRP-208ENST00000556956 PRR15LQ9BU68 103 aa1.82□□□□□ -2.12
SLIRP-208ENST00000556956 LINC00588Q9Y4M8 146 aa1.82□□□□□ -2.12
SLIRP-208ENST00000556956 TPRP12270 2363 aaKnown RBP1.82□□□□□ -2.12
SLIRP-208ENST00000556956 DOPEY2Q9Y3R5 2298 aa1.82□□□□□ -2.12
SLIRP-208ENST00000556956 CFAP46Q8IYW2 2715 aa1.82□□□□□ -2.12
SLIRP-208ENST00000556956 MUC19Q7Z5P9 8384 aa1.81□□□□□ -2.12
SLIRP-208ENST00000556956 VPS13CQ709C8 3753 aa1.81□□□□□ -2.12
SLIRP-208ENST00000556956 IGLV8-61A0A075B6I0 122 aa1.81□□□□□ -2.12
SLIRP-208ENST00000556956 IGLV9-49A0A0B4J1Y8 123 aa1.81□□□□□ -2.12
SLIRP-208ENST00000556956 LOC101927531A0A1B0GV80 90 aa1.81□□□□□ -2.12
SLIRP-208ENST00000556956 A6NED7 52 aa1.81□□□□□ -2.12
SLIRP-208ENST00000556956 C16orf90A8MZG2 172 aa1.81□□□□□ -2.12
SLIRP-208ENST00000556956 KRTAP4-16G5E9R7 235 aaPredicted RBP1.81□□□□□ -2.12
SLIRP-208ENST00000556956 LINC01556Q5JQF7 62 aa1.81□□□□□ -2.12
SLIRP-208ENST00000556956 REG3GQ6UW15 175 aa1.81□□□□□ -2.12
SLIRP-208ENST00000556956 PHF5AQ7RTV0 110 aaKnown RBP1.81□□□□□ -2.12
SLIRP-208ENST00000556956 WFDC10BQ8IUB3 73 aa1.81□□□□□ -2.12
SLIRP-208ENST00000556956 WFDC13Q8IUB5 93 aa1.81□□□□□ -2.12
SLIRP-208ENST00000556956 SPTSSBQ8NFR3 76 aa1.81□□□□□ -2.12
SLIRP-208ENST00000556956 RETNQ9HD89 108 aa1.81□□□□□ -2.12
SLIRP-208ENST00000556956 CDC42SE1Q9NRR8 79 aa1.81□□□□□ -2.12
SLIRP-208ENST00000556956 CACNA1BQ00975 2339 aa1.81□□□□□ -2.12
SLIRP-208ENST00000556956 USP9XQ93008 2570 aaPredicted RBP1.81□□□□□ -2.12
SLIRP-208ENST00000556956 NBPF19A0A087WUL8 3843 aa1.81□□□□□ -2.12
SLIRP-208ENST00000556956 FAM208BQ5VWN6 2430 aa1.8□□□□□ -2.12
SLIRP-208ENST00000556956 ZFHX3Q15911 3703 aa1.8□□□□□ -2.12
SLIRP-208ENST00000556956 A8MWP4 228 aa1.8□□□□□ -2.12
SLIRP-208ENST00000556956 IGFL1Q6UW32 110 aa1.8□□□□□ -2.12
SLIRP-208ENST00000556956 COA5Q86WW8 74 aa1.8□□□□□ -2.12
SLIRP-208ENST00000556956 C9orf163Q8N9P6 203 aa1.8□□□□□ -2.12
SLIRP-208ENST00000556956 TP53AIP1Q9HCN2 124 aa1.8□□□□□ -2.12
SLIRP-208ENST00000556956 RBM12B-AS1Q9P1G2 102 aa1.8□□□□□ -2.12
SLIRP-208ENST00000556956 LINC01558Q9Y6Z2 57 aa1.8□□□□□ -2.12
SLIRP-208ENST00000556956 FLNCQ14315 2725 aa1.8□□□□□ -2.12
SLIRP-208ENST00000556956 MED13LQ71F56 2210 aa1.79□□□□□ -2.12
SLIRP-208ENST00000556956 AKAP6Q13023 2319 aa1.79□□□□□ -2.12
SLIRP-208ENST00000556956 MYO18BQ8IUG5 2567 aa1.79□□□□□ -2.12
SLIRP-208ENST00000556956 A0A087WSZ3 146 aa1.79□□□□□ -2.12
SLIRP-208ENST00000556956 A0A087X002 238 aa1.79□□□□□ -2.12
SLIRP-208ENST00000556956 A6NN06 94 aa1.79□□□□□ -2.12
SLIRP-208ENST00000556956 KRTAP16-1A8MUX0 517 aa1.79□□□□□ -2.12
SLIRP-208ENST00000556956 PRB2P02812 416 aaPredicted RBP1.79□□□□□ -2.12
SLIRP-208ENST00000556956 DNAH10OSP0CZ25 163 aa1.79□□□□□ -2.12
SLIRP-208ENST00000556956 CNBPP62633 177 aaKnown RBP1.79□□□□□ -2.12
SLIRP-208ENST00000556956 DEFB116Q30KQ4 102 aa1.79□□□□□ -2.12
SLIRP-208ENST00000556956 C7orf65Q6ZTY9 151 aa1.79□□□□□ -2.12
SLIRP-208ENST00000556956 LCA10Q71F78 164 aa1.79□□□□□ -2.12
SLIRP-208ENST00000556956 ZNF462Q96JM2 2506 aa1.79□□□□□ -2.12
SLIRP-208ENST00000556956 ZFYVE26Q68DK2 2539 aa1.78□□□□□ -2.12
SLIRP-208ENST00000556956 SPTAN1Q13813 2472 aaKnown RBP1.78□□□□□ -2.12
SLIRP-208ENST00000556956 DEFB131BA0A096LNP1 70 aa1.78□□□□□ -2.12
SLIRP-208ENST00000556956 FAM168BA1KXE4 195 aa1.78□□□□□ -2.12
SLIRP-208ENST00000556956 SPRR1BP22528 89 aa1.78□□□□□ -2.12
SLIRP-208ENST00000556956 RPL37AP61513 92 aaKnown RBP1.78□□□□□ -2.12
SLIRP-208ENST00000556956 EPG5Q9HCE0 2579 aa1.78□□□□□ -2.12
SLIRP-208ENST00000556956 UTP20O75691 2785 aaKnown RBP1.77□□□□□ -2.13
SLIRP-208ENST00000556956 TENM4Q6N022 2769 aa1.77□□□□□ -2.13
SLIRP-208ENST00000556956 LRRK2Q5S007 2527 aa1.77□□□□□ -2.13
SLIRP-208ENST00000556956 H0Y9J4 135 aa1.77□□□□□ -2.13
SLIRP-208ENST00000556956 J3QKU1 62 aa1.77□□□□□ -2.13
SLIRP-208ENST00000556956 CDK2AP2O75956 126 aa1.77□□□□□ -2.13
SLIRP-208ENST00000556956 MOBPQ13875 183 aa1.77□□□□□ -2.13
SLIRP-208ENST00000556956 LINC00472Q9H8W2 130 aa1.77□□□□□ -2.13
SLIRP-208ENST00000556956 PLAC8Q9NZF1 115 aa1.77□□□□□ -2.13
SLIRP-208ENST00000556956 CRYBG3Q68DQ2 2970 aa1.77□□□□□ -2.13
SLIRP-208ENST00000556956 ZNF469Q96JG9 3925 aaPredicted RBP1.76□□□□□ -2.13
SLIRP-208ENST00000556956 HMCN1Q96RW7 5635 aa1.76□□□□□ -2.13
SLIRP-208ENST00000556956 PTPN13Q12923 2485 aa1.76□□□□□ -2.13
SLIRP-208ENST00000556956 TACC2O95359 2948 aa1.76□□□□□ -2.13
SLIRP-208ENST00000556956 FBN2P35556 2912 aa1.76□□□□□ -2.13
SLIRP-208ENST00000556956 AKAP9Q99996 3911 aa1.76□□□□□ -2.13
SLIRP-208ENST00000556956 MMP24-AS1A0A0U1RRL7 71 aa1.76□□□□□ -2.13
SLIRP-208ENST00000556956 A8MU10 97 aa1.76□□□□□ -2.13
SLIRP-208ENST00000556956 ASB16-AS1Q495Z4 193 aa1.76□□□□□ -2.13
SLIRP-208ENST00000556956 PCOTHQ58A44 107 aa1.76□□□□□ -2.13
SLIRP-208ENST00000556956 SPAG11AQ6PDA7 123 aa1.76□□□□□ -2.13
SLIRP-208ENST00000556956 Q6ZR54 194 aa1.76□□□□□ -2.13
SLIRP-208ENST00000556956 C11orf45Q8TAV5 145 aa1.76□□□□□ -2.13
SLIRP-208ENST00000556956 PRAC1Q96KF2 57 aa1.76□□□□□ -2.13
SLIRP-208ENST00000556956 ITPR3Q14573 2671 aa1.76□□□□□ -2.13
SLIRP-208ENST00000556956 USP9YO00507 2555 aaPredicted RBP1.76□□□□□ -2.13
SLIRP-208ENST00000556956 CSMD2Q7Z408 3487 aa1.76□□□□□ -2.13
SLIRP-208ENST00000556956 COL12A1Q99715 3063 aa1.75□□□□□ -2.13
SLIRP-208ENST00000556956 APCP25054 2843 aa1.75□□□□□ -2.13
SLIRP-208ENST00000556956 CREBBPQ92793 2442 aa1.75□□□□□ -2.13
SLIRP-208ENST00000556956 A0A0G2JQZ4 141 aa1.75□□□□□ -2.13
SLIRP-208ENST00000556956 A0A1W2PNN7 141 aa1.75□□□□□ -2.13
SLIRP-208ENST00000556956 ACYP2P14621 99 aa1.75□□□□□ -2.13
SLIRP-208ENST00000556956 PRLHP81277 87 aa1.75□□□□□ -2.13
SLIRP-208ENST00000556956 C8orf17Q9NRJ1 99 aa1.75□□□□□ -2.13
SLIRP-208ENST00000556956 CHD6Q8TD26 2715 aa1.75□□□□□ -2.13
SLIRP-208ENST00000556956 FLNAP21333 2647 aaKnown RBP1.75□□□□□ -2.13
SLIRP-208ENST00000556956 ASH1LQ9NR48 2969 aaKnown RBP1.75□□□□□ -2.13
SLIRP-208ENST00000556956 CELSR2Q9HCU4 2923 aa1.75□□□□□ -2.13
SLIRP-208ENST00000556956 CSMD1Q96PZ7 3565 aa1.74□□□□□ -2.13
SLIRP-208ENST00000556956 PDZD2O15018 2839 aa1.74□□□□□ -2.13
SLIRP-208ENST00000556956 NAV2Q8IVL1 2488 aa1.74□□□□□ -2.13
SLIRP-208ENST00000556956 IGKV2-24A0A0C4DH68 120 aa1.74□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms