RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 ZZEF1O43149 2961 aa1.8□□□□□ -2.12
PRPF39-210ENST00000556718 HTN3P15516 51 aa1.8□□□□□ -2.12
PRPF39-210ENST00000556718 KRTAP12-3P60328 96 aa1.8□□□□□ -2.12
PRPF39-210ENST00000556718 KRTAP12-4P60329 112 aa1.8□□□□□ -2.12
PRPF39-210ENST00000556718 DOPEY2Q9Y3R5 2298 aa1.8□□□□□ -2.12
PRPF39-210ENST00000556718 ZFHX3Q15911 3703 aa1.79□□□□□ -2.12
PRPF39-210ENST00000556718 LY6G6CO95867 125 aa1.79□□□□□ -2.12
PRPF39-210ENST00000556718 KRTAP12-1P59990 96 aa1.79□□□□□ -2.12
PRPF39-210ENST00000556718 DEFB113Q30KQ7 82 aa1.79□□□□□ -2.12
PRPF39-210ENST00000556718 KRTAP26-1Q6PEX3 210 aa1.79□□□□□ -2.12
PRPF39-210ENST00000556718 SSBP3-AS1Q7Z2R9 100 aa1.79□□□□□ -2.12
PRPF39-210ENST00000556718 CR1P17927 2039 aa1.79□□□□□ -2.12
PRPF39-210ENST00000556718 TECTAO75443 2155 aa1.79□□□□□ -2.12
PRPF39-210ENST00000556718 TRANK1O15050 2925 aa1.78□□□□□ -2.12
PRPF39-210ENST00000556718 MED13LQ71F56 2210 aa1.78□□□□□ -2.12
PRPF39-210ENST00000556718 LINC01556Q5JQF7 62 aa1.78□□□□□ -2.12
PRPF39-210ENST00000556718 Q6ZRN7 208 aaPredicted RBP1.78□□□□□ -2.12
PRPF39-210ENST00000556718 MAP1BP46821 2468 aaKnown RBP1.78□□□□□ -2.12
PRPF39-210ENST00000556718 CEP250Q9BV73 2442 aa1.78□□□□□ -2.12
PRPF39-210ENST00000556718 SPTBN1Q01082 2364 aaKnown RBP1.78□□□□□ -2.12
PRPF39-210ENST00000556718 CACNA1BQ00975 2339 aa1.77□□□□□ -2.13
PRPF39-210ENST00000556718 EP400Q96L91 3159 aa1.77□□□□□ -2.13
PRPF39-210ENST00000556718 CRIPTQ9P021 101 aa1.77□□□□□ -2.13
PRPF39-210ENST00000556718 PIEZO2Q9H5I5 2752 aa1.76□□□□□ -2.13
PRPF39-210ENST00000556718 CHD9Q3L8U1 2897 aa1.76□□□□□ -2.13
PRPF39-210ENST00000556718 COX6B2Q6YFQ2 88 aa1.76□□□□□ -2.13
PRPF39-210ENST00000556718 FRYQ5TBA9 3013 aa1.76□□□□□ -2.13
PRPF39-210ENST00000556718 WNK1Q9H4A3 2382 aa1.76□□□□□ -2.13
PRPF39-210ENST00000556718 CUL9Q8IWT3 2517 aa1.75□□□□□ -2.13
PRPF39-210ENST00000556718 MGAQ8IWI9 3026 aa1.75□□□□□ -2.13
PRPF39-210ENST00000556718 ZFHX2Q9C0A1 2572 aaPredicted RBP1.75□□□□□ -2.13
PRPF39-210ENST00000556718 A0A096LNI7 61 aa1.74□□□□□ -2.13
PRPF39-210ENST00000556718 KALRNO60229 2985 aa1.74□□□□□ -2.13
PRPF39-210ENST00000556718 PRLHP81277 87 aa1.74□□□□□ -2.13
PRPF39-210ENST00000556718 DEFB135Q30KP9 77 aa1.74□□□□□ -2.13
PRPF39-210ENST00000556718 TPRP12270 2363 aaKnown RBP1.74□□□□□ -2.13
PRPF39-210ENST00000556718 FRYLO94915 3013 aa1.74□□□□□ -2.13
PRPF39-210ENST00000556718 SDK1Q7Z5N4 2213 aa1.74□□□□□ -2.13
PRPF39-210ENST00000556718 SPTBN2O15020 2390 aa1.73□□□□□ -2.13
PRPF39-210ENST00000556718 FBN1P35555 2871 aaKnown RBP1.73□□□□□ -2.13
PRPF39-210ENST00000556718 ROS1P08922 2347 aa1.73□□□□□ -2.13
PRPF39-210ENST00000556718 PKDREJQ9NTG1 2253 aa1.73□□□□□ -2.13
PRPF39-210ENST00000556718 COL6A3P12111 3177 aa1.73□□□□□ -2.13
PRPF39-210ENST00000556718 DEFB4AO15263 64 aa1.73□□□□□ -2.13
PRPF39-210ENST00000556718 H1FX-AS1Q4G0G2 97 aa1.73□□□□□ -2.13
PRPF39-210ENST00000556718 Q96NJ1 140 aa1.73□□□□□ -2.13
PRPF39-210ENST00000556718 AKAP13Q12802 2813 aa1.72□□□□□ -2.13
PRPF39-210ENST00000556718 CHD7Q9P2D1 2997 aa1.72□□□□□ -2.13
PRPF39-210ENST00000556718 A0A087WTM6 91 aa1.72□□□□□ -2.13
PRPF39-210ENST00000556718 RANBP2P49792 3224 aaKnown RBP1.72□□□□□ -2.13
PRPF39-210ENST00000556718 FCGBPQ9Y6R7 5405 aaPredicted RBP1.72□□□□□ -2.13
PRPF39-210ENST00000556718 TRIOO75962 3097 aa1.71□□□□□ -2.14
PRPF39-210ENST00000556718 DSPP15924 2871 aaKnown RBP1.71□□□□□ -2.14
PRPF39-210ENST00000556718 PRRC2CQ9Y520 2896 aaKnown RBP1.71□□□□□ -2.14
PRPF39-210ENST00000556718 SPINK1P00995 79 aa1.71□□□□□ -2.14
PRPF39-210ENST00000556718 Q6ZSA8 131 aa1.71□□□□□ -2.14
PRPF39-210ENST00000556718 TACC2O95359 2948 aa1.71□□□□□ -2.14
PRPF39-210ENST00000556718 APC2O95996 2303 aa1.71□□□□□ -2.14
PRPF39-210ENST00000556718 RP1L1Q8IWN7 2480 aaPredicted RBP1.71□□□□□ -2.14
PRPF39-210ENST00000556718 UTRNP46939 3433 aa1.7□□□□□ -2.14
PRPF39-210ENST00000556718 MAP1AP78559 2803 aaPredicted RBP1.7□□□□□ -2.14
PRPF39-210ENST00000556718 PTPRZ1P23471 2315 aaPredicted RBP1.7□□□□□ -2.14
PRPF39-210ENST00000556718 RPL37P61927 97 aaKnown RBP1.7□□□□□ -2.14
PRPF39-210ENST00000556718 SPINK6Q6UWN8 80 aa1.7□□□□□ -2.14
PRPF39-210ENST00000556718 CHD6Q8TD26 2715 aa1.7□□□□□ -2.14
PRPF39-210ENST00000556718 CFAP54Q96N23 3096 aa1.69□□□□□ -2.14
PRPF39-210ENST00000556718 FN1P02751 2386 aaKnown RBP1.69□□□□□ -2.14
PRPF39-210ENST00000556718 H0YAA0 97 aa1.69□□□□□ -2.14
PRPF39-210ENST00000556718 K7EIL1 84 aa1.69□□□□□ -2.14
PRPF39-210ENST00000556718 COL6A6A6NMZ7 2263 aa1.69□□□□□ -2.14
PRPF39-210ENST00000556718 C5orf42Q9H799 3197 aa1.69□□□□□ -2.14
PRPF39-210ENST00000556718 KMT2BQ9UMN6 2715 aaPredicted RBP1.68□□□□□ -2.14
PRPF39-210ENST00000556718 ANKHD1Q8IWZ3 2542 aaKnown RBP1.68□□□□□ -2.14
PRPF39-210ENST00000556718 CNOT1A5YKK6 2376 aaKnown RBP1.68□□□□□ -2.14
PRPF39-210ENST00000556718 NBDYA0A0U1RRE5 68 aa1.68□□□□□ -2.14
PRPF39-210ENST00000556718 PCNX1Q96RV3 2341 aa1.68□□□□□ -2.14
PRPF39-210ENST00000556718 EP300Q09472 2414 aaPredicted RBP1.68□□□□□ -2.14
PRPF39-210ENST00000556718 HTTP42858 3142 aa1.67□□□□□ -2.14
PRPF39-210ENST00000556718 LAMA1P25391 3075 aa1.67□□□□□ -2.14
PRPF39-210ENST00000556718 AKAP6Q13023 2319 aa1.67□□□□□ -2.14
PRPF39-210ENST00000556718 CREBBPQ92793 2442 aa1.67□□□□□ -2.14
PRPF39-210ENST00000556718 VPS13AQ96RL7 3174 aa1.67□□□□□ -2.14
PRPF39-210ENST00000556718 LAMA2P24043 3122 aaKnown RBP1.66□□□□□ -2.14
PRPF39-210ENST00000556718 PRUNE2Q8WUY3 3088 aa1.66□□□□□ -2.14
PRPF39-210ENST00000556718 UNC80Q8N2C7 3258 aa1.66□□□□□ -2.14
PRPF39-210ENST00000556718 CACNA1HO95180 2353 aa1.66□□□□□ -2.14
PRPF39-210ENST00000556718 WDFY4Q6ZS81 3184 aa1.65□□□□□ -2.14
PRPF39-210ENST00000556718 KRTAP21-3Q3LHN1 58 aa1.65□□□□□ -2.15
PRPF39-210ENST00000556718 PLAC4Q8WY50 150 aa1.65□□□□□ -2.15
PRPF39-210ENST00000556718 C2CD3Q4AC94 2353 aa1.65□□□□□ -2.15
PRPF39-210ENST00000556718 ALMS1Q8TCU4 4167 aa1.65□□□□□ -2.15
PRPF39-210ENST00000556718 DMXL2Q8TDJ6 3036 aa1.64□□□□□ -2.15
PRPF39-210ENST00000556718 UBE2DNLQ8IWF7 75 aa1.64□□□□□ -2.15
PRPF39-210ENST00000556718 DEFB123Q8N688 67 aa1.64□□□□□ -2.15
PRPF39-210ENST00000556718 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.64□□□□□ -2.151e-12■■■■■ 46.1
PRPF39-210ENST00000556718 LRBAP50851 2863 aa1.64□□□□□ -2.15
PRPF39-210ENST00000556718 APLNQ9ULZ1 77 aa1.63□□□□□ -2.15
PRPF39-210ENST00000556718 ANKRD17O75179 2603 aaKnown RBP1.63□□□□□ -2.15
PRPF39-210ENST00000556718 SZT2Q5T011 3432 aa1.63□□□□□ -2.15
PRPF39-210ENST00000556718 XIRP2A4UGR9 3374 aa1.62□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms