RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 EDDM3BP56851 147 aa1.3□□□□□ -2.2
LIMA1-210ENST00000552045 RBM3P98179 157 aaKnown RBP1.3□□□□□ -2.2
LIMA1-210ENST00000552045 MINOS1Q5TGZ0 78 aa1.3□□□□□ -2.2
LIMA1-210ENST00000552045 KAAG1Q9UBP8 84 aa1.3□□□□□ -2.2
LIMA1-210ENST00000552045 MDN1Q9NU22 5596 aa1.29□□□□□ -2.2
LIMA1-210ENST00000552045 APOC4-APOC2K7ER74 178 aa1.29□□□□□ -2.2
LIMA1-210ENST00000552045 HTN3P15516 51 aa1.29□□□□□ -2.2
LIMA1-210ENST00000552045 PPP3R1P63098 170 aa1.29□□□□□ -2.2
LIMA1-210ENST00000552045 CATR1Q13166 79 aa1.29□□□□□ -2.2
LIMA1-210ENST00000552045 INSL4Q14641 139 aa1.29□□□□□ -2.2
LIMA1-210ENST00000552045 SPATA8Q6RVD6 105 aa1.28□□□□□ -2.2
LIMA1-210ENST00000552045 MYOZ3Q8TDC0 251 aa1.28□□□□□ -2.2
LIMA1-210ENST00000552045 IER3IP1Q9Y5U9 82 aa1.28□□□□□ -2.2
LIMA1-210ENST00000552045 LINC00312Q9Y6C7 94 aa1.28□□□□□ -2.2
LIMA1-210ENST00000552045 OOSP1A8MZH6 123 aa1.27□□□□□ -2.21
LIMA1-210ENST00000552045 HCG22E2RYF7 251 aa1.27□□□□□ -2.21
LIMA1-210ENST00000552045 S100A8P05109 93 aa1.27□□□□□ -2.21
LIMA1-210ENST00000552045 TPPP2P59282 170 aa1.27□□□□□ -2.21
LIMA1-210ENST00000552045 MT1HP80294 61 aa1.27□□□□□ -2.21
LIMA1-210ENST00000552045 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.27□□□□□ -2.21
LIMA1-210ENST00000552045 KRTAP19-3Q7Z4W3 81 aa1.27□□□□□ -2.21
LIMA1-210ENST00000552045 TRAV30A0A087WSZ9 112 aa1.26□□□□□ -2.21
LIMA1-210ENST00000552045 TRAV13-2A0A0B4J235 113 aa1.26□□□□□ -2.21
LIMA1-210ENST00000552045 SIX6O95475 246 aa1.26□□□□□ -2.21
LIMA1-210ENST00000552045 SPART-AS1P0CW21 52 aa1.26□□□□□ -2.21
LIMA1-210ENST00000552045 HSD52Q0P140 79 aa1.26□□□□□ -2.21
LIMA1-210ENST00000552045 DEFB114Q30KQ6 69 aa1.26□□□□□ -2.21
LIMA1-210ENST00000552045 WFDC6Q9BQY6 131 aa1.26□□□□□ -2.21
LIMA1-210ENST00000552045 MUC17Q685J3 4493 aa1.26□□□□□ -2.21
LIMA1-210ENST00000552045 DSTQ03001 7570 aaKnown RBP1.26□□□□□ -2.21
LIMA1-210ENST00000552045 GVQW2A0A096LPI5 108 aaPredicted RBP1.25□□□□□ -2.21
LIMA1-210ENST00000552045 TMEM218A2RU14 115 aa1.25□□□□□ -2.21
LIMA1-210ENST00000552045 APOC2P02655 101 aa1.25□□□□□ -2.21
LIMA1-210ENST00000552045 SPINK7P58062 85 aa1.25□□□□□ -2.21
LIMA1-210ENST00000552045 MRPL54Q6P161 138 aaKnown RBP1.25□□□□□ -2.21
LIMA1-210ENST00000552045 ACBD7Q8N6N7 88 aa1.25□□□□□ -2.21
LIMA1-210ENST00000552045 G3V318 75 aa1.24□□□□□ -2.21
LIMA1-210ENST00000552045 MPC2O95563 127 aa1.24□□□□□ -2.21
LIMA1-210ENST00000552045 ACYP2P14621 99 aa1.24□□□□□ -2.21
LIMA1-210ENST00000552045 C9orf153Q5TBE3 101 aa1.24□□□□□ -2.21
LIMA1-210ENST00000552045 GTF2H5Q6ZYL4 71 aa1.24□□□□□ -2.21
LIMA1-210ENST00000552045 C8orf59Q8N0T1 100 aaPredicted RBP1.24□□□□□ -2.21
LIMA1-210ENST00000552045 SMIM11BQ8TCY0 68 aa1.24□□□□□ -2.21
LIMA1-210ENST00000552045 GAFA1Q96PS6 74 aa1.24□□□□□ -2.21
LIMA1-210ENST00000552045 TRGV1A0A0A0MS02 117 aa1.23□□□□□ -2.21
LIMA1-210ENST00000552045 IQCF6A8MYZ5 107 aa1.23□□□□□ -2.21
LIMA1-210ENST00000552045 M0R143 59 aa1.23□□□□□ -2.21
LIMA1-210ENST00000552045 SPINK8P0C7L1 97 aa1.23□□□□□ -2.21
LIMA1-210ENST00000552045 KRTAP19-6Q3LI70 58 aa1.23□□□□□ -2.21
LIMA1-210ENST00000552045 SNHG12Q9BXW3 62 aa1.23□□□□□ -2.21
LIMA1-210ENST00000552045 AHNAKQ09666 5890 aaKnown RBP1.23□□□□□ -2.21
LIMA1-210ENST00000552045 IFITM1P13164 125 aa1.22□□□□□ -2.21
LIMA1-210ENST00000552045 PKIAP61925 76 aa1.22□□□□□ -2.21
LIMA1-210ENST00000552045 PRR15LQ9BU68 103 aa1.22□□□□□ -2.21
LIMA1-210ENST00000552045 S100A10P60903 97 aa1.21□□□□□ -2.22
LIMA1-210ENST00000552045 COMMD6Q7Z4G1 85 aa1.21□□□□□ -2.22
LIMA1-210ENST00000552045 AQP10Q96PS8 301 aa1.21□□□□□ -2.22
LIMA1-210ENST00000552045 MUC5BQ9HC84 5762 aaPredicted RBP1.21□□□□□ -2.22
LIMA1-210ENST00000552045 SPRR2EP22531 72 aa1.2□□□□□ -2.22
LIMA1-210ENST00000552045 SPRR2BP35325 72 aa1.2□□□□□ -2.22
LIMA1-210ENST00000552045 SPRR2AP35326 72 aa1.2□□□□□ -2.22
LIMA1-210ENST00000552045 GNG2P59768 71 aa1.2□□□□□ -2.22
LIMA1-210ENST00000552045 TDRG1Q3Y452 100 aa1.2□□□□□ -2.22
LIMA1-210ENST00000552045 KRTAP5-10Q6L8G5 202 aa1.2□□□□□ -2.22
LIMA1-210ENST00000552045 SPINK6Q6UWN8 80 aa1.2□□□□□ -2.22
LIMA1-210ENST00000552045 SVBPQ8N300 66 aa1.2□□□□□ -2.22
LIMA1-210ENST00000552045 TTC9CQ8N5M4 171 aa1.2□□□□□ -2.22
LIMA1-210ENST00000552045 SCP2D1Q9UJQ7 156 aa1.2□□□□□ -2.22
LIMA1-210ENST00000552045 COX6B2Q6YFQ2 88 aa1.19□□□□□ -2.22
LIMA1-210ENST00000552045 SPANXDQ9BXN6 97 aa1.19□□□□□ -2.22
LIMA1-210ENST00000552045 TMEM262E9PQX1 116 aa1.18□□□□□ -2.22
LIMA1-210ENST00000552045 IFI6P09912 130 aa1.18□□□□□ -2.22
LIMA1-210ENST00000552045 SPRR2DP22532 72 aa1.18□□□□□ -2.22
LIMA1-210ENST00000552045 C5orf38Q86SI9 138 aa1.18□□□□□ -2.22
LIMA1-210ENST00000552045 DPY30Q9C005 99 aa1.18□□□□□ -2.22
LIMA1-210ENST00000552045 LINC00474Q9P2X8 69 aa1.18□□□□□ -2.22
LIMA1-210ENST00000552045 TMEM14DPA8MWL7 114 aa1.17□□□□□ -2.22
LIMA1-210ENST00000552045 H3BUA1 57 aa1.17□□□□□ -2.22
LIMA1-210ENST00000552045 HMGN2P05204 90 aaKnown RBP1.17□□□□□ -2.22
LIMA1-210ENST00000552045 PLGLAQ15195 96 aa1.17□□□□□ -2.22
LIMA1-210ENST00000552045 COL5A1-AS1Q5SY13 56 aa1.17□□□□□ -2.22
LIMA1-210ENST00000552045 C10orf128Q5T292 105 aa1.17□□□□□ -2.22
LIMA1-210ENST00000552045 USMG5Q96IX5 58 aa1.17□□□□□ -2.22
LIMA1-210ENST00000552045 FAM24AA6NFZ4 105 aa1.16□□□□□ -2.22
LIMA1-210ENST00000552045 MT-ATP8P03928 68 aa1.16□□□□□ -2.22
LIMA1-210ENST00000552045 DEFB130BP0DP73 79 aa1.16□□□□□ -2.22
LIMA1-210ENST00000552045 DEFB130AP0DP74 79 aa1.16□□□□□ -2.22
LIMA1-210ENST00000552045 Q6ZRX8 168 aa1.16□□□□□ -2.22
LIMA1-210ENST00000552045 PLAC8Q9NZF1 115 aa1.16□□□□□ -2.22
LIMA1-210ENST00000552045 TRAV1-2A0A0B4J238 106 aa1.15□□□□□ -2.23
LIMA1-210ENST00000552045 HEPN1Q6WQI6 88 aa1.15□□□□□ -2.23
LIMA1-210ENST00000552045 UBE2L5PA0A1B0GUS4 154 aa1.14□□□□□ -2.23
LIMA1-210ENST00000552045 PPP1R17O96001 155 aa1.14□□□□□ -2.23
LIMA1-210ENST00000552045 SNCAP37840 140 aa1.14□□□□□ -2.23
LIMA1-210ENST00000552045 DEFB131AP59861 70 aa1.14□□□□□ -2.23
LIMA1-210ENST00000552045 UBE2L3P68036 154 aaKnown RBP1.14□□□□□ -2.23
LIMA1-210ENST00000552045 DEFA5Q01523 94 aa1.14□□□□□ -2.23
LIMA1-210ENST00000552045 FAM223BA6NKX1 122 aa1.13□□□□□ -2.23
LIMA1-210ENST00000552045 KRTAP19-2Q3LHN2 52 aa1.13□□□□□ -2.23
LIMA1-210ENST00000552045 BAGE3Q86Y29 109 aa1.13□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms