RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 TAX1BP3O14907 124 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 TCL1BO95988 128 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 COX7BP24311 80 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 CNBPP62633 177 aaKnown RBP0.87□□□□□ -2.27
LIMA1-209ENST00000552008 KRTAP13-4Q3LI77 160 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 ENHOQ6UWT2 76 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 UNQ6190/PRO20217Q6UXQ8 127 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 ZGRF1Q86YA3 2104 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 WFDC10BQ8IUB3 73 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 MUSTN1Q8IVN3 82 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 C9orf163Q8N9P6 203 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 LINC00308Q8TCZ7 52 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 DEFB104AQ8WTQ1 72 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 DIRC1Q969H9 104 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 LINC00526Q96FQ7 95 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 NAA38Q9BRA0 125 aaKnown RBP0.87□□□□□ -2.27
LIMA1-209ENST00000552008 ORMDL1Q9P0S3 153 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 SS18L2Q9UHA2 77 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 NAV3Q8IVL0 2385 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 FLNBO75369 2602 aaKnown RBP0.87□□□□□ -2.27
LIMA1-209ENST00000552008 ABCA4P78363 2273 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 ZFYVE26Q68DK2 2539 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 UTP20O75691 2785 aaKnown RBP0.87□□□□□ -2.27
LIMA1-209ENST00000552008 MED12Q93074 2177 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 ITPR3Q14573 2671 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 MAP1AP78559 2803 aaPredicted RBP0.87□□□□□ -2.27
LIMA1-209ENST00000552008 ABCA12Q86UK0 2595 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 USP9XQ93008 2570 aaPredicted RBP0.87□□□□□ -2.27
LIMA1-209ENST00000552008 PTPN13Q12923 2485 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 SPTBN1Q01082 2364 aaKnown RBP0.86□□□□□ -2.27
LIMA1-209ENST00000552008 FASNP49327 2511 aaKnown RBP0.86□□□□□ -2.27
LIMA1-209ENST00000552008 CELSR3Q9NYQ7 3312 aa0.86□□□□□ -2.27
LIMA1-209ENST00000552008 PDZD2O15018 2839 aa0.86□□□□□ -2.27
LIMA1-209ENST00000552008 ALPK2Q86TB3 2170 aa0.86□□□□□ -2.27
LIMA1-209ENST00000552008 TEX49A0A1B0GTD5 131 aa0.86□□□□□ -2.27
LIMA1-209ENST00000552008 C9JAW5 83 aa0.86□□□□□ -2.27
LIMA1-209ENST00000552008 LST1O00453 97 aa0.86□□□□□ -2.27
LIMA1-209ENST00000552008 LINC00694P0DN24 101 aa0.86□□□□□ -2.27
LIMA1-209ENST00000552008 CRYGAP11844 174 aa0.86□□□□□ -2.27
LIMA1-209ENST00000552008 COX7CP15954 63 aa0.86□□□□□ -2.27
LIMA1-209ENST00000552008 RPL37AP61513 92 aaKnown RBP0.86□□□□□ -2.27
LIMA1-209ENST00000552008 RBM3P98179 157 aaKnown RBP0.86□□□□□ -2.27
LIMA1-209ENST00000552008 COX6A2Q02221 97 aa0.86□□□□□ -2.27
LIMA1-209ENST00000552008 ETDBQ3ZM63 59 aa0.86□□□□□ -2.27
LIMA1-209ENST00000552008 Q6JHZ5 121 aa0.86□□□□□ -2.27
LIMA1-209ENST00000552008 SPAG11AQ6PDA7 123 aa0.86□□□□□ -2.27
LIMA1-209ENST00000552008 C2orf82Q6UX34 121 aa0.86□□□□□ -2.27
LIMA1-209ENST00000552008 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.86□□□□□ -2.27
LIMA1-209ENST00000552008 LINC01600Q96MT4 127 aa0.86□□□□□ -2.27
LIMA1-209ENST00000552008 LIMD2Q9BT23 127 aa0.86□□□□□ -2.27
LIMA1-209ENST00000552008 C22orf24Q9Y442 160 aa0.86□□□□□ -2.27
LIMA1-209ENST00000552008 SERP1Q9Y6X1 66 aa0.86□□□□□ -2.27
LIMA1-209ENST00000552008 RTTNQ86VV8 2226 aa0.86□□□□□ -2.27
LIMA1-209ENST00000552008 DIDO1Q9BTC0 2240 aaKnown RBP0.86□□□□□ -2.27
LIMA1-209ENST00000552008 TEX15Q9BXT5 2789 aa0.86□□□□□ -2.27
LIMA1-209ENST00000552008 KIAA2026Q5HYC2 2103 aa0.86□□□□□ -2.27
LIMA1-209ENST00000552008 NIPBLQ6KC79 2804 aaeCLIP0.86□□□□□ -2.27
LIMA1-209ENST00000552008 FBN3Q75N90 2809 aa0.86□□□□□ -2.27
LIMA1-209ENST00000552008 FREM1Q5H8C1 2179 aa0.86□□□□□ -2.27
LIMA1-209ENST00000552008 ARFGEF3Q5TH69 2177 aa0.86□□□□□ -2.27
LIMA1-209ENST00000552008 FBN2P35556 2912 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 PKDREJQ9NTG1 2253 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 FAM236DA0A1B0GTK5 79 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 FAM236AA0A1B0GUQ0 79 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 FAM236BA0A1B0GV22 79 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 A8MUN3 132 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 NCR3O14931 201 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 ERC2-IT1O76042 136 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 BAALC-AS2P0C853 105 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 FAM236CP0DP71 79 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 PMAIP1Q13794 54 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 NREPQ16612 68 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 TPRXLQ17RH7 258 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 C9orf116Q5BN46 136 aaPredicted RBP0.85□□□□□ -2.27
LIMA1-209ENST00000552008 C1orf137Q5JT78 98 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 SPINK6Q6UWN8 80 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 C7orf65Q6ZTY9 151 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 SSBP3-AS1Q7Z2R9 100 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 SERP2Q8N6R1 65 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 CCDC168Q8NDH2 2452 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 DEFB105AQ8NG35 78 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 KCNQ1DNQ9H478 68 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 C6orf48Q9UBA6 75 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 CRYBG3Q68DQ2 2970 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 NBASA2RRP1 2371 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 CADP27708 2225 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 POLQO75417 2590 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 SPG11Q96JI7 2443 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 DCHS2Q6V1P9 2916 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 FLNAP21333 2647 aaKnown RBP0.85□□□□□ -2.27
LIMA1-209ENST00000552008 BAHCC1Q9P281 2608 aa0.85□□□□□ -2.27
LIMA1-209ENST00000552008 PCNX1Q96RV3 2341 aa0.84□□□□□ -2.27
LIMA1-209ENST00000552008 RELNP78509 3460 aa0.84□□□□□ -2.27
LIMA1-209ENST00000552008 SMG1Q96Q15 3661 aaKnown RBP0.84□□□□□ -2.27
LIMA1-209ENST00000552008 SORL1Q92673 2214 aa0.84□□□□□ -2.27
LIMA1-209ENST00000552008 HIVEP1P15822 2718 aa0.84□□□□□ -2.27
LIMA1-209ENST00000552008 HIVEP3Q5T1R4 2406 aa0.84□□□□□ -2.27
LIMA1-209ENST00000552008 CCDC179H3BU77 68 aa0.84□□□□□ -2.27
LIMA1-209ENST00000552008 SPINK1P00995 79 aa0.84□□□□□ -2.27
LIMA1-209ENST00000552008 ASB16-AS1Q495Z4 193 aa0.84□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms