RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 ANAPC13Q9BS18 74 aa3.2□□□□□ -1.9
LIMA1-204ENST00000549064 NAT8Q9UHE5 227 aa3.2□□□□□ -1.9
LIMA1-204ENST00000549064 CBY1Q9Y3M2 126 aa3.2□□□□□ -1.9
LIMA1-204ENST00000549064 S100A12P80511 92 aa3.19□□□□□ -1.9
LIMA1-204ENST00000549064 FA2HQ7L5A8 372 aa3.19□□□□□ -1.9
LIMA1-204ENST00000549064 TRBV20-1A0A075B6N2 111 aa3.18□□□□□ -1.9
LIMA1-204ENST00000549064 SPRR1BP22528 89 aa3.18□□□□□ -1.9
LIMA1-204ENST00000549064 NDUFA6P56556 154 aa3.18□□□□□ -1.9
LIMA1-204ENST00000549064 Q5XG85 94 aa3.18□□□□□ -1.9
LIMA1-204ENST00000549064 MDN1Q9NU22 5596 aa3.18□□□□□ -1.9
LIMA1-204ENST00000549064 FAM236DA0A1B0GTK5 79 aa3.17□□□□□ -1.9
LIMA1-204ENST00000549064 C11orf86A6NJI1 115 aa3.17□□□□□ -1.9
LIMA1-204ENST00000549064 C8orf87E5RJ46 101 aa3.17□□□□□ -1.9
LIMA1-204ENST00000549064 FAM236CP0DP71 79 aa3.17□□□□□ -1.9
LIMA1-204ENST00000549064 JOSD1Q15040 202 aaPredicted RBP3.17□□□□□ -1.9
LIMA1-204ENST00000549064 RGS21Q2M5E4 152 aa3.17□□□□□ -1.9
LIMA1-204ENST00000549064 MEIG1Q5JSS6 88 aa3.17□□□□□ -1.9
LIMA1-204ENST00000549064 SFTA2Q6UW10 78 aa3.17□□□□□ -1.9
LIMA1-204ENST00000549064 OBSCN-AS1Q96MR7 158 aa3.17□□□□□ -1.9
LIMA1-204ENST00000549064 YPEL4Q96NS1 127 aa3.17□□□□□ -1.9
LIMA1-204ENST00000549064 LAMTOR3Q9UHA4 124 aa3.17□□□□□ -1.9
LIMA1-204ENST00000549064 SCGB1C2P0DMR2 95 aa3.16□□□□□ -1.9
LIMA1-204ENST00000549064 TMEM170BQ5T4T1 132 aa3.16□□□□□ -1.9
LIMA1-204ENST00000549064 PRO1933Q9H354 126 aa3.16□□□□□ -1.9
LIMA1-204ENST00000549064 TRAV23DV6A0A075B6W5 121 aa3.15□□□□□ -1.91
LIMA1-204ENST00000549064 S100A6P06703 90 aa3.15□□□□□ -1.91
LIMA1-204ENST00000549064 KRTAP2-3P0C7H8 128 aa3.15□□□□□ -1.91
LIMA1-204ENST00000549064 C4orf26Q17RF5 130 aa3.15□□□□□ -1.91
LIMA1-204ENST00000549064 SLC25A34Q6PIV7 304 aa3.15□□□□□ -1.91
LIMA1-204ENST00000549064 KRTAP2-4Q9BYR9 128 aa3.15□□□□□ -1.91
LIMA1-204ENST00000549064 TRBV10-2A0A0K0K1G8 114 aa3.14□□□□□ -1.91
LIMA1-204ENST00000549064 ZNF73O43830 326 aaPredicted RBP3.14□□□□□ -1.91
LIMA1-204ENST00000549064 S100A7L2Q5SY68 101 aa3.14□□□□□ -1.91
LIMA1-204ENST00000549064 C10orf91Q5T1B1 145 aa3.14□□□□□ -1.91
LIMA1-204ENST00000549064 LINC01546A6NGU7 62 aa3.13□□□□□ -1.91
LIMA1-204ENST00000549064 LINC01549A6NIU2 74 aa3.13□□□□□ -1.91
LIMA1-204ENST00000549064 AKR1D1P51857 326 aa3.13□□□□□ -1.91
LIMA1-204ENST00000549064 SPANXA2-OT1Q8N9U9 137 aa3.13□□□□□ -1.91
LIMA1-204ENST00000549064 DEFB105AQ8NG35 78 aa3.13□□□□□ -1.91
LIMA1-204ENST00000549064 S100A2P29034 98 aa3.12□□□□□ -1.91
LIMA1-204ENST00000549064 COX19Q49B96 90 aa3.12□□□□□ -1.91
LIMA1-204ENST00000549064 BAGE3Q86Y29 109 aa3.12□□□□□ -1.91
LIMA1-204ENST00000549064 SPANXB1Q9NS25 103 aaPredicted RBP3.12□□□□□ -1.91
LIMA1-204ENST00000549064 LOC107984156A0A0G2JMH3 177 aa3.11□□□□□ -1.91
LIMA1-204ENST00000549064 TCL1BO95988 128 aa3.11□□□□□ -1.91
LIMA1-204ENST00000549064 ARL17AQ8IVW1 177 aa3.11□□□□□ -1.91
LIMA1-204ENST00000549064 TCTE3Q8IZS6 198 aa3.11□□□□□ -1.91
LIMA1-204ENST00000549064 Q96NJ1 140 aa3.11□□□□□ -1.91
LIMA1-204ENST00000549064 KMT2DO14686 5537 aa3.1□□□□□ -1.91
LIMA1-204ENST00000549064 KRTAP5-9P26371 169 aa3.1□□□□□ -1.91
LIMA1-204ENST00000549064 MP68P56378 58 aa3.1□□□□□ -1.91
LIMA1-204ENST00000549064 SMCO4Q9NRQ5 59 aa3.1□□□□□ -1.91
LIMA1-204ENST00000549064 HBDP02042 147 aa3.09□□□□□ -1.91
LIMA1-204ENST00000549064 HRES1P13985 223 aa3.09□□□□□ -1.91
LIMA1-204ENST00000549064 HINT1P49773 126 aaPredicted RBP3.09□□□□□ -1.91
LIMA1-204ENST00000549064 NPC2P61916 151 aa3.09□□□□□ -1.91
LIMA1-204ENST00000549064 PEA15Q15121 130 aa3.09□□□□□ -1.91
LIMA1-204ENST00000549064 PMCHL1Q16048 86 aa3.09□□□□□ -1.91
LIMA1-204ENST00000549064 IGFL1Q6UW32 110 aa3.09□□□□□ -1.91
LIMA1-204ENST00000549064 TEX49A0A1B0GTD5 131 aa3.08□□□□□ -1.92
LIMA1-204ENST00000549064 COLCA2A8K830 154 aa3.08□□□□□ -1.92
LIMA1-204ENST00000549064 A8MUU9 505 aa3.08□□□□□ -1.92
LIMA1-204ENST00000549064 LINC00587B1AMM8 73 aa3.08□□□□□ -1.92
LIMA1-204ENST00000549064 NDUFC2O95298 119 aa3.08□□□□□ -1.92
LIMA1-204ENST00000549064 TSPEAR-AS2P59090 65 aa3.08□□□□□ -1.92
LIMA1-204ENST00000549064 SOSTDC1Q6X4U4 206 aa3.08□□□□□ -1.92
LIMA1-204ENST00000549064 MIEN1Q9BRT3 115 aa3.08□□□□□ -1.92
LIMA1-204ENST00000549064 MYMXA0A1B0GTQ4 84 aa3.07□□□□□ -1.92
LIMA1-204ENST00000549064 KRTAP10-5P60370 271 aa3.07□□□□□ -1.92
LIMA1-204ENST00000549064 A6NN06 94 aa3.06□□□□□ -1.92
LIMA1-204ENST00000549064 MT-ND4LP03901 98 aa3.06□□□□□ -1.92
LIMA1-204ENST00000549064 ELOF1P60002 83 aaKnown RBP3.06□□□□□ -1.92
LIMA1-204ENST00000549064 COMMD7Q86VX2 200 aa3.06□□□□□ -1.92
LIMA1-204ENST00000549064 COX7BP24311 80 aa3.05□□□□□ -1.92
LIMA1-204ENST00000549064 OR13C6PQ8NH95 151 aa3.05□□□□□ -1.92
LIMA1-204ENST00000549064 A8MWP4 228 aa3.04□□□□□ -1.92
LIMA1-204ENST00000549064 RHEBQ15382 184 aa3.04□□□□□ -1.92
LIMA1-204ENST00000549064 IGLV5-48A0A075B6I7 105 aa3.03□□□□□ -1.92
LIMA1-204ENST00000549064 TRBV7-7A0A0K0K1E9 115 aa3.03□□□□□ -1.92
LIMA1-204ENST00000549064 K7ERS5 55 aa3.03□□□□□ -1.92
LIMA1-204ENST00000549064 LCE3EQ5T5B0 92 aa3.03□□□□□ -1.92
LIMA1-204ENST00000549064 ADM2Q7Z4H4 148 aa3.03□□□□□ -1.92
LIMA1-204ENST00000549064 KRTAP2-1Q9BYU5 128 aa3.03□□□□□ -1.92
LIMA1-204ENST00000549064 LINC00614P0C842 121 aa3.02□□□□□ -1.93
LIMA1-204ENST00000549064 FABP9Q0Z7S8 132 aa3.02□□□□□ -1.93
LIMA1-204ENST00000549064 TRAV12-1A0A0B4J245 112 aa3.01□□□□□ -1.93
LIMA1-204ENST00000549064 LEPROTO15243 131 aa3.01□□□□□ -1.93
LIMA1-204ENST00000549064 SCGB1D4Q6XE38 83 aa3.01□□□□□ -1.93
LIMA1-204ENST00000549064 C18orf32Q8TCD1 76 aa3.01□□□□□ -1.93
LIMA1-204ENST00000549064 IFI27L1Q96BM0 104 aa3.01□□□□□ -1.93
LIMA1-204ENST00000549064 J3QQQ9 107 aa3□□□□□ -1.93
LIMA1-204ENST00000549064 LST1O00453 97 aa3□□□□□ -1.93
LIMA1-204ENST00000549064 SPRR2EP22531 72 aa3□□□□□ -1.93
LIMA1-204ENST00000549064 SPRR2BP35325 72 aa3□□□□□ -1.93
LIMA1-204ENST00000549064 SPRR2AP35326 72 aa3□□□□□ -1.93
LIMA1-204ENST00000549064 A6NED7 52 aa2.99□□□□□ -1.93
LIMA1-204ENST00000549064 F8WEM9 126 aa2.99□□□□□ -1.93
LIMA1-204ENST00000549064 IFITM2Q01629 132 aa2.99□□□□□ -1.93
LIMA1-204ENST00000549064 SPANXDQ9BXN6 97 aa2.99□□□□□ -1.93
LIMA1-204ENST00000549064 SPANXCQ9NY87 97 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms