RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 RTL8CO15255 209 aa10.1□□□□□ -0.79
CUX1-211ENST00000546411 VWFP04275 2813 aa10.09□□□□□ -0.79
CUX1-211ENST00000546411 A0A1W2PNM2 257 aa10.09□□□□□ -0.79
CUX1-211ENST00000546411 C1orf64Q8NEQ6 169 aa10.08□□□□□ -0.8
CUX1-211ENST00000546411 FBN1P35555 2871 aaKnown RBP10.07□□□□□ -0.8
CUX1-211ENST00000546411 ANAPC11Q9NYG5 84 aa10.07□□□□□ -0.8
CUX1-211ENST00000546411 BCE1O60756 84 aa10.06□□□□□ -0.8
CUX1-211ENST00000546411 TLX1NBP0CAT3 122 aa10.06□□□□□ -0.8
CUX1-211ENST00000546411 hDV103S1A0JD37 113 aa10.03□□□□□ -0.8
CUX1-211ENST00000546411 A6NED7 52 aa10.03□□□□□ -0.8
CUX1-211ENST00000546411 C9orf163Q8N9P6 203 aa10.03□□□□□ -0.8
CUX1-211ENST00000546411 A0A1B0GW54 56 aa10.02□□□□□ -0.81
CUX1-211ENST00000546411 TENM3Q9P273 2699 aa10.01□□□□□ -0.81
CUX1-211ENST00000546411 LINC00336Q6ZUF6 198 aa10.01□□□□□ -0.81
CUX1-211ENST00000546411 OTOGQ6ZRI0 2925 aa10.01□□□□□ -0.81
CUX1-211ENST00000546411 H7BZZ5 65 aa10□□□□□ -0.81
CUX1-211ENST00000546411 PRR15LQ9BU68 103 aa9.99□□□□□ -0.81
CUX1-211ENST00000546411 CYSTM1Q9H1C7 97 aa9.99□□□□□ -0.81
CUX1-211ENST00000546411 APLNQ9ULZ1 77 aa9.99□□□□□ -0.81
CUX1-211ENST00000546411 SPACA4Q8TDM5 124 aa9.98□□□□□ -0.81
CUX1-211ENST00000546411 PLA2G2DQ9UNK4 145 aa9.98□□□□□ -0.81
CUX1-211ENST00000546411 NBPF19A0A087WUL8 3843 aa9.97□□□□□ -0.81
CUX1-211ENST00000546411 KLKP1Q107X0 134 aa9.97□□□□□ -0.81
CUX1-211ENST00000546411 BSNQ9UPA5 3926 aa9.96□□□□□ -0.81
CUX1-211ENST00000546411 PDZD2O15018 2839 aa9.96□□□□□ -0.82
CUX1-211ENST00000546411 IGLV5-48A0A075B6I7 105 aa9.96□□□□□ -0.82
CUX1-211ENST00000546411 KRTAP26-1Q6PEX3 210 aa9.95□□□□□ -0.82
CUX1-211ENST00000546411 A0A087WTM6 91 aa9.95□□□□□ -0.82
CUX1-211ENST00000546411 KRTAP1-5Q9BYS1 174 aa9.94□□□□□ -0.82
CUX1-211ENST00000546411 TRAV22A0A0B4J277 110 aa9.93□□□□□ -0.82
CUX1-211ENST00000546411 ZFHX3Q15911 3703 aa9.93□□□□□ -0.82
CUX1-211ENST00000546411 A8MWP4 228 aa9.92□□□□□ -0.82
CUX1-211ENST00000546411 CNBPP62633 177 aaKnown RBP9.92□□□□□ -0.82
CUX1-211ENST00000546411 IGKV2D-30A0A075B6S6 120 aa9.9□□□□□ -0.82
CUX1-211ENST00000546411 IGKV2-30P06310 120 aa9.9□□□□□ -0.82
CUX1-211ENST00000546411 SPINK1P00995 79 aa9.9□□□□□ -0.83
CUX1-211ENST00000546411 PRR15Q8IV56 129 aa9.89□□□□□ -0.83
CUX1-211ENST00000546411 PSORS1C2Q9UIG4 136 aa9.89□□□□□ -0.83
CUX1-211ENST00000546411 Q5XG85 94 aa9.88□□□□□ -0.83
CUX1-211ENST00000546411 IGLV5-37A0A075B6J1 123 aa9.87□□□□□ -0.83
CUX1-211ENST00000546411 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.86□□□□□ -0.83
CUX1-211ENST00000546411 DSCR10P59022 87 aa9.85□□□□□ -0.83
CUX1-211ENST00000546411 PMAIP1Q13794 54 aa9.84□□□□□ -0.83
CUX1-211ENST00000546411 SPAG11AQ6PDA7 123 aa9.84□□□□□ -0.83
CUX1-211ENST00000546411 ZNF861PO60384 105 aa9.83□□□□□ -0.84
CUX1-211ENST00000546411 OCR1Q9BZK8 76 aa9.82□□□□□ -0.84
CUX1-211ENST00000546411 TP53AIP1Q9HCN2 124 aa9.82□□□□□ -0.84
CUX1-211ENST00000546411 OXTP01178 125 aa9.8□□□□□ -0.84
CUX1-211ENST00000546411 SPRR1AP35321 89 aa9.8□□□□□ -0.84
CUX1-211ENST00000546411 SPRR4Q96PI1 79 aa9.79□□□□□ -0.84
CUX1-211ENST00000546411 WWC2-AS2Q96NR7 200 aa9.78□□□□□ -0.84
CUX1-211ENST00000546411 C8orf17Q9NRJ1 99 aa9.78□□□□□ -0.84
CUX1-211ENST00000546411 PKD1L1Q8TDX9 2849 aa9.77□□□□□ -0.85
CUX1-211ENST00000546411 LINC00313P59037 77 aa9.77□□□□□ -0.85
CUX1-211ENST00000546411 MRPL34Q9BQ48 92 aaKnown RBP9.77□□□□□ -0.85
CUX1-211ENST00000546411 A8MUN3 132 aa9.76□□□□□ -0.85
CUX1-211ENST00000546411 TNP2Q05952 138 aa9.76□□□□□ -0.85
CUX1-211ENST00000546411 PLA2G1BP04054 148 aaKnown RBP9.76□□□□□ -0.85
CUX1-211ENST00000546411 TYMSOSQ8TAI1 123 aa9.76□□□□□ -0.85
CUX1-211ENST00000546411 LIMD2Q9BT23 127 aa9.75□□□□□ -0.85
CUX1-211ENST00000546411 SMR3BP02814 79 aaPredicted RBP9.74□□□□□ -0.85
CUX1-211ENST00000546411 A0A1B0GVX0 72 aa9.72□□□□□ -0.85
CUX1-211ENST00000546411 H3BPC8 53 aa9.72□□□□□ -0.85
CUX1-211ENST00000546411 IGLV7-43P04211 117 aa9.71□□□□□ -0.85
CUX1-211ENST00000546411 PANO1I0J062 215 aa9.69□□□□□ -0.86
CUX1-211ENST00000546411 COA5Q86WW8 74 aa9.68□□□□□ -0.86
CUX1-211ENST00000546411 TENM2Q9NT68 2774 aa9.68□□□□□ -0.86
CUX1-211ENST00000546411 VPS13CQ709C8 3753 aa9.67□□□□□ -0.86
CUX1-211ENST00000546411 Q96NJ1 140 aa9.67□□□□□ -0.86
CUX1-211ENST00000546411 C7orf65Q6ZTY9 151 aa9.65□□□□□ -0.86
CUX1-211ENST00000546411 KRTAP4-16G5E9R7 235 aaPredicted RBP9.65□□□□□ -0.86
CUX1-211ENST00000546411 IGLV8-61A0A075B6I0 122 aa9.64□□□□□ -0.87
CUX1-211ENST00000546411 ACYP2P14621 99 aa9.63□□□□□ -0.87
CUX1-211ENST00000546411 SSBP3-AS1Q7Z2R9 100 aa9.63□□□□□ -0.87
CUX1-211ENST00000546411 KRTAP7-1Q8IUC3 87 aa9.61□□□□□ -0.87
CUX1-211ENST00000546411 LOC101927531A0A1B0GV80 90 aa9.6□□□□□ -0.87
CUX1-211ENST00000546411 FP248Q71RG6 208 aaPredicted RBP9.6□□□□□ -0.87
CUX1-211ENST00000546411 FAM229BQ4G0N7 80 aa9.59□□□□□ -0.87
CUX1-211ENST00000546411 KRTAP11-1Q8IUC1 163 aa9.59□□□□□ -0.87
CUX1-211ENST00000546411 CD164Q04900 197 aa9.59□□□□□ -0.87
CUX1-211ENST00000546411 DMBT1Q9UGM3 2413 aaPredicted RBP9.58□□□□□ -0.88
CUX1-211ENST00000546411 A0A1B0GU69 56 aa9.58□□□□□ -0.88
CUX1-211ENST00000546411 FAM229AH3BQW9 127 aa9.58□□□□□ -0.88
CUX1-211ENST00000546411 TGP01266 2768 aa9.57□□□□□ -0.88
CUX1-211ENST00000546411 C8orf87E5RJ46 101 aa9.55□□□□□ -0.88
CUX1-211ENST00000546411 C9orf92A6NGG3 77 aa9.54□□□□□ -0.88
CUX1-211ENST00000546411 LINC00472Q9H8W2 130 aa9.54□□□□□ -0.88
CUX1-211ENST00000546411 TRRAPQ9Y4A5 3859 aa9.53□□□□□ -0.88
CUX1-211ENST00000546411 MMP24-AS1A0A0U1RRL7 71 aa9.53□□□□□ -0.88
CUX1-211ENST00000546411 PRR26Q8N8Z3 221 aa9.51□□□□□ -0.89
CUX1-211ENST00000546411 SPRR1BP22528 89 aa9.5□□□□□ -0.89
CUX1-211ENST00000546411 LINC00304Q8N9R0 145 aa9.49□□□□□ -0.89
CUX1-211ENST00000546411 PLAC8Q9NZF1 115 aa9.49□□□□□ -0.89
CUX1-211ENST00000546411 K7ERS5 55 aa9.46□□□□□ -0.89
CUX1-211ENST00000546411 KRTAP10-2P60368 255 aa9.46□□□□□ -0.9
CUX1-211ENST00000546411 SPANXA2-OT1Q8N9U9 137 aa9.44□□□□□ -0.9
CUX1-211ENST00000546411 ATP11AUNQ6ZP68 121 aa9.42□□□□□ -0.9
CUX1-211ENST00000546411 Q8N1X5 172 aa9.41□□□□□ -0.9
CUX1-211ENST00000546411 Q8N9P0 234 aaPredicted RBP9.41□□□□□ -0.9
CUX1-211ENST00000546411 CYP4F30PQ9H0H9 118 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms