RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	SPRR1B	P22528	89 aa		6.01	□□□□□ -1.45
CPSF7-221	ENST00000543545	LINC01547	P58512	204 aa	Predicted RBP	6.01	□□□□□ -1.45
CPSF7-221	ENST00000543545	ATXN8	Q156A1	80 aa		6.01	□□□□□ -1.45
CPSF7-221	ENST00000543545	OCIAD2	Q56VL3	154 aa		6.01	□□□□□ -1.45
CPSF7-221	ENST00000543545	C9orf153	Q5TBE3	101 aa		6.01	□□□□□ -1.45
CPSF7-221	ENST00000543545		Q8N377	158 aa		6.01	□□□□□ -1.45
CPSF7-221	ENST00000543545	C3orf22	Q8N5N4	141 aa		6.01	□□□□□ -1.45
CPSF7-221	ENST00000543545		A0A1W2PPM0	123 aa		6	□□□□□ -1.45
CPSF7-221	ENST00000543545	LST1	O00453	97 aa		6	□□□□□ -1.45
CPSF7-221	ENST00000543545	TCL1B	O95988	128 aa		6	□□□□□ -1.45
CPSF7-221	ENST00000543545	TRAC	P01848	142 aa		6	□□□□□ -1.45
CPSF7-221	ENST00000543545	KRTAP10-8	P60410	259 aa		6	□□□□□ -1.45
CPSF7-221	ENST00000543545	MOBP	Q13875	183 aa		6	□□□□□ -1.45
CPSF7-221	ENST00000543545	KRTAP13-2	Q52LG2	175 aa		6	□□□□□ -1.45
CPSF7-221	ENST00000543545	ORMDL1	Q9P0S3	153 aa		6	□□□□□ -1.45
CPSF7-221	ENST00000543545		F8WEM9	126 aa		5.99	□□□□□ -1.45
CPSF7-221	ENST00000543545	TRBV20-1	A0A075B6N2	111 aa		5.98	□□□□□ -1.45
CPSF7-221	ENST00000543545	MT1HL1	P0DM35	61 aa		5.98	□□□□□ -1.45
CPSF7-221	ENST00000543545	PPDPFL	Q8WWR9	84 aa		5.98	□□□□□ -1.45
CPSF7-221	ENST00000543545		H3BQ85	93 aa		5.97	□□□□□ -1.45
CPSF7-221	ENST00000543545	C4orf48	Q5BLP8	95 aa		5.97	□□□□□ -1.45
CPSF7-221	ENST00000543545	SSBP3-AS1	Q7Z2R9	100 aa		5.97	□□□□□ -1.45
CPSF7-221	ENST00000543545	SMIM29	Q86T20	159 aa		5.97	□□□□□ -1.45
CPSF7-221	ENST00000543545	TMEM256-PLSCR3	K7ERE1	68 aa		5.96	□□□□□ -1.46
CPSF7-221	ENST00000543545	BAALC-AS2	P0C853	105 aa		5.96	□□□□□ -1.46
CPSF7-221	ENST00000543545		Q8NBF4	154 aa		5.96	□□□□□ -1.46
CPSF7-221	ENST00000543545	SPCS1	Q9Y6A9	102 aa		5.96	□□□□□ -1.46
CPSF7-221	ENST00000543545	NDUFV3	P56181	108 aa	Known RBP	5.95	□□□□□ -1.46
CPSF7-221	ENST00000543545	LINC00304	Q8N9R0	145 aa		5.95	□□□□□ -1.46
CPSF7-221	ENST00000543545	TNXB	P22105	4242 aa		5.94	□□□□□ -1.46
CPSF7-221	ENST00000543545		A0A1B0GV72	72 aa		5.93	□□□□□ -1.46
CPSF7-221	ENST00000543545		C9JAW5	83 aa		5.93	□□□□□ -1.46
CPSF7-221	ENST00000543545		H3BMG7	143 aa		5.93	□□□□□ -1.46
CPSF7-221	ENST00000543545	SPAG11A	Q6PDA7	123 aa		5.92	□□□□□ -1.46
CPSF7-221	ENST00000543545	HRCT1	Q6UXD1	115 aa		5.92	□□□□□ -1.46
CPSF7-221	ENST00000543545	DMBT1	Q9UGM3	2413 aa	Predicted RBP	5.91	□□□□□ -1.46
CPSF7-221	ENST00000543545	UBE2V1	Q13404	147 aa		5.91	□□□□□ -1.46
CPSF7-221	ENST00000543545		Q6JHZ5	121 aa		5.91	□□□□□ -1.46
CPSF7-221	ENST00000543545	ANKRD29	Q8N6D5	301 aa		5.91	□□□□□ -1.46
CPSF7-221	ENST00000543545		A0A0G2JQZ4	141 aa		5.9	□□□□□ -1.46
CPSF7-221	ENST00000543545		K7EP34	96 aa		5.9	□□□□□ -1.46
CPSF7-221	ENST00000543545	GTF2H5	Q6ZYL4	71 aa		5.9	□□□□□ -1.46
CPSF7-221	ENST00000543545	MTURN	Q8N3F0	131 aa		5.9	□□□□□ -1.46
CPSF7-221	ENST00000543545	IGLV8-61	A0A075B6I0	122 aa		5.89	□□□□□ -1.47
CPSF7-221	ENST00000543545	SPINK1	P00995	79 aa		5.88	□□□□□ -1.47
CPSF7-221	ENST00000543545	IGFL1	Q6UW32	110 aa		5.88	□□□□□ -1.47
CPSF7-221	ENST00000543545	RBM3	P98179	157 aa	Known RBP	5.87	□□□□□ -1.47
CPSF7-221	ENST00000543545		H3BT86	120 aa		5.86	□□□□□ -1.47
CPSF7-221	ENST00000543545	LCE2B	O14633	110 aa		5.86	□□□□□ -1.47
CPSF7-221	ENST00000543545	CD164	Q04900	197 aa		5.86	□□□□□ -1.47
CPSF7-221	ENST00000543545	DSCR8	Q96T75	97 aa		5.86	□□□□□ -1.47
CPSF7-221	ENST00000543545	JMJD7-PLA2G4B	H0Y9G9	81 aa		5.85	□□□□□ -1.47
CPSF7-221	ENST00000543545	LIMD2	Q9BT23	127 aa		5.84	□□□□□ -1.47
CPSF7-221	ENST00000543545	HERC1	Q15751	4861 aa		5.84	□□□□□ -1.47
CPSF7-221	ENST00000543545	VPS25	Q9BRG1	176 aa		5.83	□□□□□ -1.48
CPSF7-221	ENST00000543545	TRBV7-7	A0A0K0K1E9	115 aa		5.82	□□□□□ -1.48
CPSF7-221	ENST00000543545	RPS29	P62273	56 aa	Known RBP	5.82	□□□□□ -1.48
CPSF7-221	ENST00000543545	TEN1	Q86WV5	123 aa		5.82	□□□□□ -1.48
CPSF7-221	ENST00000543545		A0A1B0GV90	55 aa		5.81	□□□□□ -1.48
CPSF7-221	ENST00000543545	CCK	P06307	115 aa		5.81	□□□□□ -1.48
CPSF7-221	ENST00000543545	SMCP	P49901	116 aa	Predicted RBP	5.81	□□□□□ -1.48
CPSF7-221	ENST00000543545	PRR4	Q16378	134 aa		5.81	□□□□□ -1.48
CPSF7-221	ENST00000543545	RETNLB	Q9BQ08	111 aa		5.81	□□□□□ -1.48
CPSF7-221	ENST00000543545	C14orf132	Q9NPU4	83 aa		5.81	□□□□□ -1.48
CPSF7-221	ENST00000543545	PRO0461	Q9UI25	63 aa		5.81	□□□□□ -1.48
CPSF7-221	ENST00000543545	TRBV7-4	A0A0J9YYF1	115 aa		5.8	□□□□□ -1.48
CPSF7-221	ENST00000543545		A0A1W2PNM2	257 aa		5.8	□□□□□ -1.48
CPSF7-221	ENST00000543545		F8W1H4	67 aa		5.8	□□□□□ -1.48
CPSF7-221	ENST00000543545	PDE6G	P18545	87 aa		5.79	□□□□□ -1.48
CPSF7-221	ENST00000543545		Q6Q795	121 aa		5.79	□□□□□ -1.48
CPSF7-221	ENST00000543545		A0A087WSZ3	146 aa		5.78	□□□□□ -1.48
CPSF7-221	ENST00000543545	LOC110117498	A0A087WWA1	95 aa		5.78	□□□□□ -1.48
CPSF7-221	ENST00000543545	LOC100996750	A0A140TA64	210 aa		5.78	□□□□□ -1.48
CPSF7-221	ENST00000543545	OBSCN-AS1	Q96MR7	158 aa		5.78	□□□□□ -1.48
CPSF7-221	ENST00000543545	KRTAP4-6	Q9BYQ5	205 aa		5.78	□□□□□ -1.48
CPSF7-221	ENST00000543545	SS18L2	Q9UHA2	77 aa		5.78	□□□□□ -1.48
CPSF7-221	ENST00000543545		Q6ZQT0	140 aa		5.77	□□□□□ -1.49
CPSF7-221	ENST00000543545		Q5XG85	94 aa		5.76	□□□□□ -1.49
CPSF7-221	ENST00000543545	IGLV7-46	A0A075B6I9	117 aa		5.75	□□□□□ -1.49
CPSF7-221	ENST00000543545	ETDB	Q3ZM63	59 aa		5.75	□□□□□ -1.49
CPSF7-221	ENST00000543545	C21orf62-AS1	Q17RA5	79 aa		5.74	□□□□□ -1.49
CPSF7-221	ENST00000543545	FP248	Q71RG6	208 aa	Predicted RBP	5.74	□□□□□ -1.49
CPSF7-221	ENST00000543545	HMCN2	Q8NDA2	5059 aa		5.73	□□□□□ -1.49
CPSF7-221	ENST00000543545	C1orf195	Q5TG92	126 aa		5.73	□□□□□ -1.49
CPSF7-221	ENST00000543545	ASB16-AS1	Q495Z4	193 aa		5.72	□□□□□ -1.49
CPSF7-221	ENST00000543545		A0A1B0GW54	56 aa		5.7	□□□□□ -1.5
CPSF7-221	ENST00000543545	NREP	Q16612	68 aa		5.68	□□□□□ -1.5
CPSF7-221	ENST00000543545	DEFB116	Q30KQ4	102 aa		5.68	□□□□□ -1.5
CPSF7-221	ENST00000543545	SIGMAR1	Q99720	223 aa		5.68	□□□□□ -1.5
CPSF7-221	ENST00000543545	IGKV4-1	P06312	121 aa		5.67	□□□□□ -1.5
CPSF7-221	ENST00000543545	LINC00472	Q9H8W2	130 aa		5.66	□□□□□ -1.5
CPSF7-221	ENST00000543545		Q96NJ1	140 aa		5.65	□□□□□ -1.5
CPSF7-221	ENST00000543545	CDIP1	Q9H305	208 aa		5.65	□□□□□ -1.5
CPSF7-221	ENST00000543545	C9orf92	A6NGG3	77 aa		5.64	□□□□□ -1.51
CPSF7-221	ENST00000543545	TPRXL	Q17RH7	258 aa		5.64	□□□□□ -1.51
CPSF7-221	ENST00000543545		J3KT08	172 aa		5.63	□□□□□ -1.51
CPSF7-221	ENST00000543545	KRTAP13-3	Q3SY46	172 aa		5.63	□□□□□ -1.51
CPSF7-221	ENST00000543545	UBL5	Q9BZL1	73 aa		5.63	□□□□□ -1.51
CPSF7-221	ENST00000543545	LINC00846	Q9NV44	126 aa		5.62	□□□□□ -1.51
CPSF7-221	ENST00000543545		Q6ZVQ6	151 aa		5.61	□□□□□ -1.51

Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms