RNA–Protein interactions for RNA: ENST00000541363.5

HMGA2-210, Transcript of high mobility group AT-hook 2, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA2, Length 8,094 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-210ENST00000541363 SPRR1BP22528 89 aa9.2□□□□□ -0.94
HMGA2-210ENST00000541363 KRTAP26-1Q6PEX3 210 aa9.19□□□□□ -0.94
HMGA2-210ENST00000541363 FASNP49327 2511 aaKnown RBP9.18□□□□□ -0.94
HMGA2-210ENST00000541363 KRTAP25-1Q3LHN0 102 aa9.17□□□□□ -0.94
HMGA2-210ENST00000541363 OXTP01178 125 aa9.15□□□□□ -0.94
HMGA2-210ENST00000541363 A0A087X002 238 aa9.15□□□□□ -0.94
HMGA2-210ENST00000541363 PANO1I0J062 215 aa9.15□□□□□ -0.94
HMGA2-210ENST00000541363 Q6ZR54 194 aa9.15□□□□□ -0.94
HMGA2-210ENST00000541363 CENPEQ02224 2701 aa9.13□□□□□ -0.95
HMGA2-210ENST00000541363 KMT2BQ9UMN6 2715 aaPredicted RBP9.08□□□□□ -0.96
HMGA2-210ENST00000541363 NDUFAF8A1L188 74 aa9.07□□□□□ -0.96
HMGA2-210ENST00000541363 SRCAPQ6ZRS2 3230 aa9.05□□□□□ -0.96
HMGA2-210ENST00000541363 A8MUU9 505 aa9.04□□□□□ -0.96
HMGA2-210ENST00000541363 KRTAP1-3Q8IUG1 177 aa9.02□□□□□ -0.96
HMGA2-210ENST00000541363 DMBT1Q9UGM3 2413 aaPredicted RBP8.99□□□□□ -0.97
HMGA2-210ENST00000541363 C10orf95Q9H7T3 257 aa8.98□□□□□ -0.97
HMGA2-210ENST00000541363 AKAP13Q12802 2813 aa8.98□□□□□ -0.97
HMGA2-210ENST00000541363 KRTAP1-1Q07627 177 aa8.96□□□□□ -0.97
HMGA2-210ENST00000541363 TNP1P09430 55 aa8.95□□□□□ -0.98
HMGA2-210ENST00000541363 KRTAP10-1P60331 282 aa8.94□□□□□ -0.98
HMGA2-210ENST00000541363 CENPFP49454 3210 aa8.93□□□□□ -0.98
HMGA2-210ENST00000541363 A6NN06 94 aa8.93□□□□□ -0.98
HMGA2-210ENST00000541363 A8MU10 97 aa8.92□□□□□ -0.98
HMGA2-210ENST00000541363 KRTAP29-1A8MX34 341 aaPredicted RBP8.86□□□□□ -0.99
HMGA2-210ENST00000541363 NBEAL1Q6ZS30 2694 aa8.86□□□□□ -0.99
HMGA2-210ENST00000541363 LCE6AA0A183 80 aa8.86□□□□□ -0.99
HMGA2-210ENST00000541363 KRTAP10-2P60368 255 aa8.86□□□□□ -0.99
HMGA2-210ENST00000541363 MGAM2Q2M2H8 2515 aa8.86□□□□□ -0.99
HMGA2-210ENST00000541363 KRTAP1-5Q9BYS1 174 aa8.82□□□□□ -1
HMGA2-210ENST00000541363 RPS29P62273 56 aaKnown RBP8.79□□□□□ -1
HMGA2-210ENST00000541363 KRTAP4-16G5E9R7 235 aaPredicted RBP8.73□□□□□ -1.01
HMGA2-210ENST00000541363 CFAP46Q8IYW2 2715 aa8.72□□□□□ -1.01
HMGA2-210ENST00000541363 NOTCH2NLQ7Z3S9 236 aa8.72□□□□□ -1.01
HMGA2-210ENST00000541363 PP632Q6XCG6 107 aa8.71□□□□□ -1.02
HMGA2-210ENST00000541363 HECTD1Q9ULT8 2610 aa8.65□□□□□ -1.02
HMGA2-210ENST00000541363 KRTAP11-1Q8IUC1 163 aa8.64□□□□□ -1.03
HMGA2-210ENST00000541363 FLNAP21333 2647 aaKnown RBP8.62□□□□□ -1.03
HMGA2-210ENST00000541363 ITPR3Q14573 2671 aa8.57□□□□□ -1.04
HMGA2-210ENST00000541363 P0C880 135 aa8.56□□□□□ -1.04
HMGA2-210ENST00000541363 KRTAP10-8P60410 259 aa8.56□□□□□ -1.04
HMGA2-210ENST00000541363 STAB1Q9NY15 2570 aa8.56□□□□□ -1.04
HMGA2-210ENST00000541363 ATRQ13535 2644 aa8.53□□□□□ -1.04
HMGA2-210ENST00000541363 NOTCH1P46531 2555 aa8.53□□□□□ -1.04
HMGA2-210ENST00000541363 HELZ2Q9BYK8 2649 aaKnown RBP8.51□□□□□ -1.05
HMGA2-210ENST00000541363 CHD6Q8TD26 2715 aa8.51□□□□□ -1.05
HMGA2-210ENST00000541363 MAST4O15021 2626 aa8.5□□□□□ -1.05
HMGA2-210ENST00000541363 STAB2Q8WWQ8 2551 aa8.48□□□□□ -1.05
HMGA2-210ENST00000541363 Q6ZRN7 208 aaPredicted RBP8.47□□□□□ -1.05
HMGA2-210ENST00000541363 EP400Q96L91 3159 aa8.42□□□□□ -1.06
HMGA2-210ENST00000541363 GCN1Q92616 2671 aaKnown RBP8.42□□□□□ -1.06
HMGA2-210ENST00000541363 UNC79Q9P2D8 2635 aa8.39□□□□□ -1.07
HMGA2-210ENST00000541363 KRTAP13-2Q52LG2 175 aa8.38□□□□□ -1.07
HMGA2-210ENST00000541363 PRO2289Q9P1D8 64 aa8.38□□□□□ -1.07
HMGA2-210ENST00000541363 APCP25054 2843 aa8.33□□□□□ -1.08
HMGA2-210ENST00000541363 COL6A5A8TX70 2615 aa8.31□□□□□ -1.08
HMGA2-210ENST00000541363 FLNBO75369 2602 aaKnown RBP8.31□□□□□ -1.08
HMGA2-210ENST00000541363 C5orf42Q9H799 3197 aa8.3□□□□□ -1.08
HMGA2-210ENST00000541363 TEX15Q9BXT5 2789 aa8.29□□□□□ -1.08
HMGA2-210ENST00000541363 CEP350Q5VT06 3117 aa8.28□□□□□ -1.08
HMGA2-210ENST00000541363 A0A1B0GVY2 172 aa8.26□□□□□ -1.09
HMGA2-210ENST00000541363 KRTAP13-1Q8IUC0 172 aa8.26□□□□□ -1.09
HMGA2-210ENST00000541363 H0YAA0 97 aa8.2□□□□□ -1.1
HMGA2-210ENST00000541363 KRTAP7-1Q8IUC3 87 aa8.18□□□□□ -1.1
HMGA2-210ENST00000541363 ITPR2Q14571 2701 aa8.17□□□□□ -1.1
HMGA2-210ENST00000541363 KRTAP10-10P60014 251 aa8.16□□□□□ -1.1
HMGA2-210ENST00000541363 ITPR1Q14643 2758 aa8.15□□□□□ -1.1
HMGA2-210ENST00000541363 DNAH12Q6ZR08 3092 aa8.11□□□□□ -1.11
HMGA2-210ENST00000541363 TEP1Q99973 2627 aaKnown RBP8.11□□□□□ -1.11
HMGA2-210ENST00000541363 XP32Q5T750 250 aa8.1□□□□□ -1.11
HMGA2-210ENST00000541363 BAHCC1Q9P281 2608 aa8.03□□□□□ -1.12
HMGA2-210ENST00000541363 A0A0C4DFX4 3053 aa8.03□□□□□ -1.12
HMGA2-210ENST00000541363 UTP20O75691 2785 aaKnown RBP8.02□□□□□ -1.13
HMGA2-210ENST00000541363 NSD1Q96L73 2696 aaPredicted RBP8.02□□□□□ -1.13
HMGA2-210ENST00000541363 CFAP54Q96N23 3096 aa8□□□□□ -1.13
HMGA2-210ENST00000541363 PCNTO95613 3336 aa7.98□□□□□ -1.13
HMGA2-210ENST00000541363 GOLGB1Q14789 3259 aaKnown RBP7.97□□□□□ -1.13
HMGA2-210ENST00000541363 SETXQ7Z333 2677 aaKnown RBP7.97□□□□□ -1.13
HMGA2-210ENST00000541363 TPRXLQ17RH7 258 aa7.96□□□□□ -1.14
HMGA2-210ENST00000541363 IGSF10Q6WRI0 2623 aa7.96□□□□□ -1.14
HMGA2-210ENST00000541363 MAP1AP78559 2803 aaPredicted RBP7.95□□□□□ -1.14
HMGA2-210ENST00000541363 UBR5O95071 2799 aaPredicted RBP7.95□□□□□ -1.14
HMGA2-210ENST00000541363 ZNF292O60281 2723 aa7.9□□□□□ -1.15
HMGA2-210ENST00000541363 NBEAL2Q6ZNJ1 2754 aa7.89□□□□□ -1.15
HMGA2-210ENST00000541363 UTRNP46939 3433 aa7.89□□□□□ -1.15
HMGA2-210ENST00000541363 KRTAP12-2P59991 146 aa7.84□□□□□ -1.15
HMGA2-210ENST00000541363 KRTAP1-4P0C5Y4 121 aa7.79□□□□□ -1.16
HMGA2-210ENST00000541363 DSPP15924 2871 aaKnown RBP7.76□□□□□ -1.17
HMGA2-210ENST00000541363 KRTAP13-4Q3LI77 160 aa7.75□□□□□ -1.17
HMGA2-210ENST00000541363 LRBAP50851 2863 aa7.74□□□□□ -1.17
HMGA2-210ENST00000541363 KRTAP13-3Q3SY46 172 aa7.69□□□□□ -1.18
HMGA2-210ENST00000541363 FRYLO94915 3013 aa7.68□□□□□ -1.18
HMGA2-210ENST00000541363 KRTAP21-3Q3LHN1 58 aa7.67□□□□□ -1.18
HMGA2-210ENST00000541363 KRTAP15-1Q3LI76 137 aa7.67□□□□□ -1.18
HMGA2-210ENST00000541363 FRYQ5TBA9 3013 aa7.65□□□□□ -1.19
HMGA2-210ENST00000541363 MGAQ8IWI9 3026 aa7.64□□□□□ -1.19
HMGA2-210ENST00000541363 LAMA2P24043 3122 aaKnown RBP7.62□□□□□ -1.19
HMGA2-210ENST00000541363 TRANK1O15050 2925 aa7.6□□□□□ -1.19
HMGA2-210ENST00000541363 FREM2Q5SZK8 3169 aa7.59□□□□□ -1.2
HMGA2-210ENST00000541363 INE1O15225 51 aa7.56□□□□□ -1.2
HMGA2-210ENST00000541363 REV3LO60673 3130 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms