RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 Q6ZQY7 126 aa7.84□□□□□ -1.15
USP28-209ENST00000540925 A0A0B4J2C4 111 aa7.83□□□□□ -1.16
USP28-209ENST00000540925 H7C2G1 150 aa7.83□□□□□ -1.16
USP28-209ENST00000540925 PYY3Q5JQD4 70 aa7.83□□□□□ -1.16
USP28-209ENST00000540925 BVES-AS1Q5T3Y7 98 aa7.83□□□□□ -1.16
USP28-209ENST00000540925 XP32Q5T750 250 aa7.83□□□□□ -1.16
USP28-209ENST00000540925 IGLV8-61A0A075B6I0 122 aa7.82□□□□□ -1.16
USP28-209ENST00000540925 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.81□□□□□ -1.16
USP28-209ENST00000540925 A0A0U1RQV1 116 aa7.8□□□□□ -1.16
USP28-209ENST00000540925 CEND1Q8N111 149 aa7.8□□□□□ -1.16
USP28-209ENST00000540925 C1orf195Q5TG92 126 aa7.79□□□□□ -1.16
USP28-209ENST00000540925 PPDPFLQ8WWR9 84 aa7.79□□□□□ -1.16
USP28-209ENST00000540925 RAB37Q96AX2 223 aa7.78□□□□□ -1.16
USP28-209ENST00000540925 KRTAP4-1Q9BYQ7 146 aa7.78□□□□□ -1.16
USP28-209ENST00000540925 FXYD2P54710 66 aa7.77□□□□□ -1.17
USP28-209ENST00000540925 SEC61BP60468 96 aaKnown RBP7.76□□□□□ -1.17
USP28-209ENST00000540925 Q6JHZ5 121 aa7.76□□□□□ -1.17
USP28-209ENST00000540925 FAM218AQ96MZ4 157 aa7.76□□□□□ -1.17
USP28-209ENST00000540925 F8WEM9 126 aa7.75□□□□□ -1.17
USP28-209ENST00000540925 H0YGX0 51 aa7.75□□□□□ -1.17
USP28-209ENST00000540925 OCIAD2Q56VL3 154 aa7.75□□□□□ -1.17
USP28-209ENST00000540925 IGFL1Q6UW32 110 aa7.75□□□□□ -1.17
USP28-209ENST00000540925 FSIP2Q5CZC0 6907 aa7.75□□□□□ -1.17
USP28-209ENST00000540925 CLEC2BQ92478 149 aa7.74□□□□□ -1.17
USP28-209ENST00000540925 PRO1854Q9UHT4 67 aa7.74□□□□□ -1.17
USP28-209ENST00000540925 TMEM238LA0A1B0GVL6 79 aa7.73□□□□□ -1.17
USP28-209ENST00000540925 A6NJY4 79 aa7.73□□□□□ -1.17
USP28-209ENST00000540925 TMA7Q9Y2S6 64 aaKnown RBP7.72□□□□□ -1.17
USP28-209ENST00000540925 TRBV7-7A0A0K0K1E9 115 aa7.71□□□□□ -1.18
USP28-209ENST00000540925 HSD52Q0P140 79 aa7.71□□□□□ -1.18
USP28-209ENST00000540925 A0A1B0GX51 115 aa7.7□□□□□ -1.18
USP28-209ENST00000540925 C9orf92A6NGG3 77 aa7.7□□□□□ -1.18
USP28-209ENST00000540925 TCL1BO95988 128 aa7.7□□□□□ -1.18
USP28-209ENST00000540925 TRIAP1O43715 76 aa7.69□□□□□ -1.18
USP28-209ENST00000540925 SNHG12Q9BXW3 62 aa7.69□□□□□ -1.18
USP28-209ENST00000540925 H3BUT2 72 aa7.68□□□□□ -1.18
USP28-209ENST00000540925 K7ERJ3 54 aa7.66□□□□□ -1.18
USP28-209ENST00000540925 SNCGO76070 127 aa7.66□□□□□ -1.18
USP28-209ENST00000540925 Q6Q795 121 aa7.66□□□□□ -1.18
USP28-209ENST00000540925 UQCR10Q9UDW1 63 aa7.66□□□□□ -1.18
USP28-209ENST00000540925 NDUFV3P56181 108 aaKnown RBP7.65□□□□□ -1.18
USP28-209ENST00000540925 PCOTHQ58A44 107 aa7.63□□□□□ -1.19
USP28-209ENST00000540925 CRCT1Q9UGL9 99 aa7.63□□□□□ -1.19
USP28-209ENST00000540925 KRTAP19-2Q3LHN2 52 aa7.62□□□□□ -1.19
USP28-209ENST00000540925 RPL37P61927 97 aaKnown RBP7.61□□□□□ -1.19
USP28-209ENST00000540925 GHRHP01286 108 aa7.6□□□□□ -1.19
USP28-209ENST00000540925 LCE2CQ5TA81 110 aa7.6□□□□□ -1.19
USP28-209ENST00000540925 TEN1Q86WV5 123 aa7.6□□□□□ -1.19
USP28-209ENST00000540925 H3BMG7 143 aa7.59□□□□□ -1.19
USP28-209ENST00000540925 LCE2DQ5TA82 110 aaPredicted RBP7.59□□□□□ -1.19
USP28-209ENST00000540925 FABP2P12104 132 aa7.58□□□□□ -1.2
USP28-209ENST00000540925 A0A1W2PNM2 257 aa7.57□□□□□ -1.2
USP28-209ENST00000540925 LST1O00453 97 aa7.57□□□□□ -1.2
USP28-209ENST00000540925 PSMB2P49721 201 aa7.57□□□□□ -1.2
USP28-209ENST00000540925 Q96NJ1 140 aa7.56□□□□□ -1.2
USP28-209ENST00000540925 ORMDL1Q9P0S3 153 aa7.56□□□□□ -1.2
USP28-209ENST00000540925 SS18L2Q9UHA2 77 aa7.56□□□□□ -1.2
USP28-209ENST00000540925 H3BQ85 93 aa7.55□□□□□ -1.2
USP28-209ENST00000540925 COX6CP09669 75 aa7.55□□□□□ -1.2
USP28-209ENST00000540925 A0A087WSZ3 146 aa7.54□□□□□ -1.2
USP28-209ENST00000540925 DNAL4O96015 105 aa7.54□□□□□ -1.2
USP28-209ENST00000540925 TRACP01848 142 aa7.53□□□□□ -1.2
USP28-209ENST00000540925 TMEM256-PLSCR3K7ERE1 68 aa7.52□□□□□ -1.21
USP28-209ENST00000540925 OBSCN-AS1Q96MR7 158 aa7.52□□□□□ -1.21
USP28-209ENST00000540925 TRBV7-4A0A0J9YYF1 115 aa7.51□□□□□ -1.21
USP28-209ENST00000540925 Q75L30 129 aa7.51□□□□□ -1.21
USP28-209ENST00000540925 SMIM6P0DI80 62 aa7.5□□□□□ -1.21
USP28-209ENST00000540925 UBE2V1Q13404 147 aa7.5□□□□□ -1.21
USP28-209ENST00000540925 FLGP20930 4061 aaPredicted RBP7.5□□□□□ -1.21
USP28-209ENST00000540925 ANKRD29Q8N6D5 301 aa7.49□□□□□ -1.21
USP28-209ENST00000540925 M0R143 59 aa7.46□□□□□ -1.22
USP28-209ENST00000540925 MT1HP80294 61 aa7.46□□□□□ -1.22
USP28-209ENST00000540925 C20orf166-AS1Q96NR2 134 aa7.46□□□□□ -1.22
USP28-209ENST00000540925 A0A1B0GV72 72 aa7.45□□□□□ -1.22
USP28-209ENST00000540925 SCGB1C2P0DMR2 95 aa7.45□□□□□ -1.22
USP28-209ENST00000540925 A8MUU9 505 aa7.44□□□□□ -1.22
USP28-209ENST00000540925 CCKP06307 115 aa7.43□□□□□ -1.22
USP28-209ENST00000540925 LINC00472Q9H8W2 130 aa7.43□□□□□ -1.22
USP28-209ENST00000540925 ATP11AUNQ6ZP68 121 aa7.41□□□□□ -1.22
USP28-209ENST00000540925 LOC105371267A0A1B0GV96 52 aa7.4□□□□□ -1.22
USP28-209ENST00000540925 BAALC-AS2P0C853 105 aa7.4□□□□□ -1.22
USP28-209ENST00000540925 RBM3P98179 157 aaKnown RBP7.4□□□□□ -1.22
USP28-209ENST00000540925 NAA38Q9BRA0 125 aaKnown RBP7.4□□□□□ -1.22
USP28-209ENST00000540925 KRTAP16-1A8MUX0 517 aa7.39□□□□□ -1.23
USP28-209ENST00000540925 SIGMAR1Q99720 223 aa7.39□□□□□ -1.23
USP28-209ENST00000540925 IGKV4-1P06312 121 aa7.38□□□□□ -1.23
USP28-209ENST00000540925 DSCR10P59022 87 aa7.38□□□□□ -1.23
USP28-209ENST00000540925 ATXN8Q156A1 80 aa7.38□□□□□ -1.23
USP28-209ENST00000540925 DSCR8Q96T75 97 aa7.37□□□□□ -1.23
USP28-209ENST00000540925 TSTD3H0UI37 97 aa7.36□□□□□ -1.23
USP28-209ENST00000540925 NOTCH2NLQ7Z3S9 236 aa7.36□□□□□ -1.23
USP28-209ENST00000540925 DEFB116Q30KQ4 102 aa7.35□□□□□ -1.23
USP28-209ENST00000540925 LINC00313P59037 77 aa7.34□□□□□ -1.23
USP28-209ENST00000540925 C9JAW5 83 aa7.33□□□□□ -1.24
USP28-209ENST00000540925 LOC110117498A0A087WWA1 95 aa7.32□□□□□ -1.24
USP28-209ENST00000540925 LORP23490 312 aaPredicted RBP7.32□□□□□ -1.24
USP28-209ENST00000540925 Q6ZQT0 140 aa7.32□□□□□ -1.24
USP28-209ENST00000540925 VPS25Q9BRG1 176 aa7.32□□□□□ -1.24
USP28-209ENST00000540925 C21orf62-AS1Q17RA5 79 aa7.31□□□□□ -1.24
USP28-209ENST00000540925 TRBV20-1A0A075B6N2 111 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms