RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-238ENST00000540663 ASB16-AS1Q495Z4 193 aa6.56□□□□□ -1.36
SYNE1-238ENST00000540663 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.56□□□□□ -1.36
SYNE1-238ENST00000540663 PPDPFLQ8WWR9 84 aa6.56□□□□□ -1.36
SYNE1-238ENST00000540663 RAB37Q96AX2 223 aa6.56□□□□□ -1.36
SYNE1-238ENST00000540663 C2orf91Q6ZV80 131 aa6.55□□□□□ -1.36
SYNE1-238ENST00000540663 TMEM238LA0A1B0GVL6 79 aa6.54□□□□□ -1.36
SYNE1-238ENST00000540663 A6NJY4 79 aa6.54□□□□□ -1.36
SYNE1-238ENST00000540663 SNCGO76070 127 aa6.54□□□□□ -1.36
SYNE1-238ENST00000540663 XP32Q5T750 250 aa6.54□□□□□ -1.36
SYNE1-238ENST00000540663 Q6JHZ5 121 aa6.54□□□□□ -1.36
SYNE1-238ENST00000540663 IGLV8-61A0A075B6I0 122 aa6.53□□□□□ -1.36
SYNE1-238ENST00000540663 H0YGX0 51 aa6.52□□□□□ -1.37
SYNE1-238ENST00000540663 TCL1BO95988 128 aa6.52□□□□□ -1.37
SYNE1-238ENST00000540663 CEND1Q8N111 149 aa6.52□□□□□ -1.37
SYNE1-238ENST00000540663 OCIAD2Q56VL3 154 aa6.51□□□□□ -1.37
SYNE1-238ENST00000540663 A0A0G2JQZ4 141 aa6.5□□□□□ -1.37
SYNE1-238ENST00000540663 C1orf195Q5TG92 126 aa6.5□□□□□ -1.37
SYNE1-238ENST00000540663 CLEC2BQ92478 149 aa6.5□□□□□ -1.37
SYNE1-238ENST00000540663 PYY3Q5JQD4 70 aa6.49□□□□□ -1.37
SYNE1-238ENST00000540663 SNHG12Q9BXW3 62 aa6.49□□□□□ -1.37
SYNE1-238ENST00000540663 PRO1854Q9UHT4 67 aa6.49□□□□□ -1.37
SYNE1-238ENST00000540663 A0A1B0GX51 115 aa6.48□□□□□ -1.37
SYNE1-238ENST00000540663 GHRHP01286 108 aa6.47□□□□□ -1.37
SYNE1-238ENST00000540663 FXYD2P54710 66 aa6.47□□□□□ -1.37
SYNE1-238ENST00000540663 HSD52Q0P140 79 aa6.47□□□□□ -1.37
SYNE1-238ENST00000540663 IGFL1Q6UW32 110 aa6.47□□□□□ -1.37
SYNE1-238ENST00000540663 TRBV7-7A0A0K0K1E9 115 aa6.46□□□□□ -1.38
SYNE1-238ENST00000540663 TMA7Q9Y2S6 64 aaKnown RBP6.46□□□□□ -1.38
SYNE1-238ENST00000540663 FAT4Q6V0I7 4981 aa6.46□□□□□ -1.38
SYNE1-238ENST00000540663 C9orf92A6NGG3 77 aa6.45□□□□□ -1.38
SYNE1-238ENST00000540663 FAM218AQ96MZ4 157 aa6.44□□□□□ -1.38
SYNE1-238ENST00000540663 LCE2AQ5TA79 106 aaPredicted RBP6.43□□□□□ -1.38
SYNE1-238ENST00000540663 UQCR10Q9UDW1 63 aa6.43□□□□□ -1.38
SYNE1-238ENST00000540663 H3BUT2 72 aa6.42□□□□□ -1.38
SYNE1-238ENST00000540663 TRIAP1O43715 76 aa6.42□□□□□ -1.38
SYNE1-238ENST00000540663 NDUFV3P56181 108 aaKnown RBP6.42□□□□□ -1.38
SYNE1-238ENST00000540663 H3BQ85 93 aa6.41□□□□□ -1.38
SYNE1-238ENST00000540663 Q6Q795 121 aa6.41□□□□□ -1.38
SYNE1-238ENST00000540663 KRTAP4-1Q9BYQ7 146 aa6.41□□□□□ -1.38
SYNE1-238ENST00000540663 SS18L2Q9UHA2 77 aa6.4□□□□□ -1.38
SYNE1-238ENST00000540663 COX6CP09669 75 aa6.39□□□□□ -1.39
SYNE1-238ENST00000540663 FABP2P12104 132 aa6.39□□□□□ -1.39
SYNE1-238ENST00000540663 PSMB2P49721 201 aa6.39□□□□□ -1.39
SYNE1-238ENST00000540663 PCOTHQ58A44 107 aa6.39□□□□□ -1.39
SYNE1-238ENST00000540663 TEN1Q86WV5 123 aa6.39□□□□□ -1.39
SYNE1-238ENST00000540663 H3BMG7 143 aa6.38□□□□□ -1.39
SYNE1-238ENST00000540663 K7ERJ3 54 aa6.38□□□□□ -1.39
SYNE1-238ENST00000540663 LST1O00453 97 aa6.38□□□□□ -1.39
SYNE1-238ENST00000540663 DNAL4O96015 105 aa6.38□□□□□ -1.39
SYNE1-238ENST00000540663 RPL37P61927 97 aaKnown RBP6.37□□□□□ -1.39
SYNE1-238ENST00000540663 ORMDL1Q9P0S3 153 aa6.36□□□□□ -1.39
SYNE1-238ENST00000540663 TMEM256-PLSCR3K7ERE1 68 aa6.34□□□□□ -1.39
SYNE1-238ENST00000540663 A0A087WSZ3 146 aa6.32□□□□□ -1.4
SYNE1-238ENST00000540663 TRACP01848 142 aa6.31□□□□□ -1.4
SYNE1-238ENST00000540663 ANKRD29Q8N6D5 301 aa6.31□□□□□ -1.4
SYNE1-238ENST00000540663 OBSCN-AS1Q96MR7 158 aa6.31□□□□□ -1.4
SYNE1-238ENST00000540663 TRBV7-4A0A0J9YYF1 115 aa6.3□□□□□ -1.4
SYNE1-238ENST00000540663 A0A1W2PNM2 257 aa6.3□□□□□ -1.4
SYNE1-238ENST00000540663 UBE2V1Q13404 147 aa6.3□□□□□ -1.4
SYNE1-238ENST00000540663 M0R143 59 aa6.29□□□□□ -1.4
SYNE1-238ENST00000540663 SMIM6P0DI80 62 aa6.29□□□□□ -1.4
SYNE1-238ENST00000540663 SCGB1C2P0DMR2 95 aa6.29□□□□□ -1.4
SYNE1-238ENST00000540663 Q75L30 129 aa6.29□□□□□ -1.4
SYNE1-238ENST00000540663 Q96NJ1 140 aa6.27□□□□□ -1.41
SYNE1-238ENST00000540663 KRTAP19-2Q3LHN2 52 aa6.26□□□□□ -1.41
SYNE1-238ENST00000540663 LCE2CQ5TA81 110 aa6.26□□□□□ -1.41
SYNE1-238ENST00000540663 A0A1B0GV72 72 aa6.25□□□□□ -1.41
SYNE1-238ENST00000540663 ATP11AUNQ6ZP68 121 aa6.25□□□□□ -1.41
SYNE1-238ENST00000540663 CCKP06307 115 aa6.24□□□□□ -1.41
SYNE1-238ENST00000540663 SIGMAR1Q99720 223 aa6.24□□□□□ -1.41
SYNE1-238ENST00000540663 RBM3P98179 157 aaKnown RBP6.23□□□□□ -1.41
SYNE1-238ENST00000540663 C20orf166-AS1Q96NR2 134 aa6.23□□□□□ -1.41
SYNE1-238ENST00000540663 C21orf62-AS1Q17RA5 79 aa6.22□□□□□ -1.41
SYNE1-238ENST00000540663 DSCR8Q96T75 97 aa6.22□□□□□ -1.41
SYNE1-238ENST00000540663 KRTAP9-2Q9BYQ4 174 aa6.22□□□□□ -1.41
SYNE1-238ENST00000540663 A8MUU9 505 aa6.21□□□□□ -1.42
SYNE1-238ENST00000540663 IGKV4-1P06312 121 aa6.21□□□□□ -1.42
SYNE1-238ENST00000540663 BAALC-AS2P0C853 105 aa6.21□□□□□ -1.42
SYNE1-238ENST00000540663 ATXN8Q156A1 80 aa6.21□□□□□ -1.42
SYNE1-238ENST00000540663 TSTD3H0UI37 97 aa6.2□□□□□ -1.42
SYNE1-238ENST00000540663 MT1HP80294 61 aa6.19□□□□□ -1.42
SYNE1-238ENST00000540663 LYRM7Q5U5X0 104 aa6.19□□□□□ -1.42
SYNE1-238ENST00000540663 LINC00472Q9H8W2 130 aa6.19□□□□□ -1.42
SYNE1-238ENST00000540663 C9JAW5 83 aa6.18□□□□□ -1.42
SYNE1-238ENST00000540663 DSCR10P59022 87 aa6.18□□□□□ -1.42
SYNE1-238ENST00000540663 LINC00313P59037 77 aa6.18□□□□□ -1.42
SYNE1-238ENST00000540663 COX6B2Q6YFQ2 88 aa6.18□□□□□ -1.42
SYNE1-238ENST00000540663 VPS25Q9BRG1 176 aa6.18□□□□□ -1.42
SYNE1-238ENST00000540663 JMJD7-PLA2G4BH0Y9G9 81 aa6.16□□□□□ -1.42
SYNE1-238ENST00000540663 NAA38Q9BRA0 125 aaKnown RBP6.16□□□□□ -1.42
SYNE1-238ENST00000540663 FLGP20930 4061 aaPredicted RBP6.15□□□□□ -1.42
SYNE1-238ENST00000540663 TRBV20-1A0A075B6N2 111 aa6.15□□□□□ -1.42
SYNE1-238ENST00000540663 A0A1B0GW54 56 aa6.14□□□□□ -1.43
SYNE1-238ENST00000540663 J3KT08 172 aa6.14□□□□□ -1.43
SYNE1-238ENST00000540663 PDE6GP18545 87 aa6.14□□□□□ -1.43
SYNE1-238ENST00000540663 DEFB116Q30KQ4 102 aa6.14□□□□□ -1.43
SYNE1-238ENST00000540663 LOC110117498A0A087WWA1 95 aa6.13□□□□□ -1.43
SYNE1-238ENST00000540663 KRTAP16-1A8MUX0 517 aa6.13□□□□□ -1.43
SYNE1-238ENST00000540663 IGHV6-1A0A0B4J1U7 121 aa6.12□□□□□ -1.43
SYNE1-238ENST00000540663 A0A1B0GVX0 72 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 222.7 ms