RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 LCE6AA0A183 80 aa12.85□□□□□ -0.35
TMEM260-203ENST00000539559 IGFL1Q6UW32 110 aa12.84□□□□□ -0.35
TMEM260-203ENST00000539559 C1orf64Q8NEQ6 169 aa12.84□□□□□ -0.35
TMEM260-203ENST00000539559 CSMD3Q7Z407 3707 aa12.83□□□□□ -0.36
TMEM260-203ENST00000539559 RPL37AP61513 92 aaKnown RBP12.83□□□□□ -0.36
TMEM260-203ENST00000539559 DNAH1Q9P2D7 4330 aa12.83□□□□□ -0.36
TMEM260-203ENST00000539559 hDV103S1A0JD37 113 aa12.83□□□□□ -0.36
TMEM260-203ENST00000539559 HCG22E2RYF7 251 aa12.83□□□□□ -0.36
TMEM260-203ENST00000539559 DNAH10Q8IVF4 4471 aa12.83□□□□□ -0.36
TMEM260-203ENST00000539559 A0A1B0GW54 56 aa12.82□□□□□ -0.36
TMEM260-203ENST00000539559 ZCCHC13Q8WW36 166 aaKnown RBP12.82□□□□□ -0.36
TMEM260-203ENST00000539559 LYSTQ99698 3801 aa12.81□□□□□ -0.36
TMEM260-203ENST00000539559 A0A087WSZ3 146 aa12.81□□□□□ -0.36
TMEM260-203ENST00000539559 A0A096LNI7 61 aa12.77□□□□□ -0.37
TMEM260-203ENST00000539559 PSPHP1O15172 72 aa12.72□□□□□ -0.37
TMEM260-203ENST00000539559 KRTAP11-1Q8IUC1 163 aa12.71□□□□□ -0.37
TMEM260-203ENST00000539559 KRTAP1-5Q9BYS1 174 aa12.7□□□□□ -0.38
TMEM260-203ENST00000539559 CHTF8P0CG12 524 aa12.69□□□□□ -0.38
TMEM260-203ENST00000539559 LINC00208Q96KT6 92 aa12.68□□□□□ -0.38
TMEM260-203ENST00000539559 UBE2AP49459 152 aa12.67□□□□□ -0.38
TMEM260-203ENST00000539559 HUWE1Q7Z6Z7 4374 aaKnown RBP12.67□□□□□ -0.38
TMEM260-203ENST00000539559 PHF5AQ7RTV0 110 aaKnown RBP12.65□□□□□ -0.38
TMEM260-203ENST00000539559 B9D2Q9BPU9 175 aa12.65□□□□□ -0.39
TMEM260-203ENST00000539559 COL7A1Q02388 2944 aa12.63□□□□□ -0.39
TMEM260-203ENST00000539559 DNAH9Q9NYC9 4486 aa12.63□□□□□ -0.39
TMEM260-203ENST00000539559 TENM2Q9NT68 2774 aa12.62□□□□□ -0.39
TMEM260-203ENST00000539559 C16orf90A8MZG2 172 aa12.62□□□□□ -0.39
TMEM260-203ENST00000539559 MP68P56378 58 aa12.62□□□□□ -0.39
TMEM260-203ENST00000539559 TRAV22A0A0B4J277 110 aa12.61□□□□□ -0.39
TMEM260-203ENST00000539559 Q1T7F1 81 aa12.61□□□□□ -0.39
TMEM260-203ENST00000539559 C1orf195Q5TG92 126 aa12.61□□□□□ -0.39
TMEM260-203ENST00000539559 KRTAP29-1A8MX34 341 aaPredicted RBP12.6□□□□□ -0.39
TMEM260-203ENST00000539559 CYP4F30PQ9H0H9 118 aa12.59□□□□□ -0.39
TMEM260-203ENST00000539559 CNBPP62633 177 aaKnown RBP12.59□□□□□ -0.39
TMEM260-203ENST00000539559 CASC2Q6XLA1 102 aa12.59□□□□□ -0.39
TMEM260-203ENST00000539559 STAB2Q8WWQ8 2551 aa12.59□□□□□ -0.39
TMEM260-203ENST00000539559 IGLV8-61A0A075B6I0 122 aa12.58□□□□□ -0.4
TMEM260-203ENST00000539559 H0Y9P7 68 aa12.58□□□□□ -0.4
TMEM260-203ENST00000539559 A8MUN3 132 aa12.55□□□□□ -0.4
TMEM260-203ENST00000539559 PRR15Q8IV56 129 aa12.54□□□□□ -0.4
TMEM260-203ENST00000539559 NDUFB1O75438 58 aa12.53□□□□□ -0.4
TMEM260-203ENST00000539559 A8MU10 97 aa12.53□□□□□ -0.4
TMEM260-203ENST00000539559 H0Y9J4 135 aa12.51□□□□□ -0.41
TMEM260-203ENST00000539559 LINC00472Q9H8W2 130 aa12.5□□□□□ -0.41
TMEM260-203ENST00000539559 APLNQ9ULZ1 77 aa12.5□□□□□ -0.41
TMEM260-203ENST00000539559 A8MWP4 228 aa12.49□□□□□ -0.41
TMEM260-203ENST00000539559 UBE2DNLQ8IWF7 75 aa12.48□□□□□ -0.41
TMEM260-203ENST00000539559 DNAH7Q8WXX0 4024 aa12.47□□□□□ -0.41
TMEM260-203ENST00000539559 PANO1I0J062 215 aa12.46□□□□□ -0.41
TMEM260-203ENST00000539559 NUPR2A6NF83 97 aa12.42□□□□□ -0.42
TMEM260-203ENST00000539559 IGLV9-49A0A0B4J1Y8 123 aa12.41□□□□□ -0.42
TMEM260-203ENST00000539559 SPRR1BP22528 89 aa12.41□□□□□ -0.42
TMEM260-203ENST00000539559 MMP24-AS1A0A0U1RRL7 71 aa12.41□□□□□ -0.42
TMEM260-203ENST00000539559 Q5VV11 94 aa12.4□□□□□ -0.42
TMEM260-203ENST00000539559 PCOTHQ58A44 107 aa12.4□□□□□ -0.42
TMEM260-203ENST00000539559 V9GYY9 64 aa12.39□□□□□ -0.43
TMEM260-203ENST00000539559 C9orf163Q8N9P6 203 aa12.38□□□□□ -0.43
TMEM260-203ENST00000539559 Q8N9P0 234 aaPredicted RBP12.37□□□□□ -0.43
TMEM260-203ENST00000539559 SPANXA2-OT1Q8N9U9 137 aa12.36□□□□□ -0.43
TMEM260-203ENST00000539559 PRR15LQ9BU68 103 aa12.34□□□□□ -0.43
TMEM260-203ENST00000539559 CHKB-CPT1BH3BT56 60 aa12.33□□□□□ -0.44
TMEM260-203ENST00000539559 H3BPC8 53 aa12.33□□□□□ -0.44
TMEM260-203ENST00000539559 COA5Q86WW8 74 aa12.31□□□□□ -0.44
TMEM260-203ENST00000539559 Q96NJ1 140 aa12.31□□□□□ -0.44
TMEM260-203ENST00000539559 C14orf177Q52M58 125 aa12.29□□□□□ -0.44
TMEM260-203ENST00000539559 KRTAP13-1Q8IUC0 172 aa12.28□□□□□ -0.44
TMEM260-203ENST00000539559 ANAPC11Q9NYG5 84 aa12.28□□□□□ -0.44
TMEM260-203ENST00000539559 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.28□□□□□ -0.44
TMEM260-203ENST00000539559 DYNC2H1Q8NCM8 4307 aaKnown RBP12.28□□□□□ -0.44
TMEM260-203ENST00000539559 NBDYA0A0U1RRE5 68 aa12.27□□□□□ -0.44
TMEM260-203ENST00000539559 PMAIP1Q13794 54 aa12.27□□□□□ -0.44
TMEM260-203ENST00000539559 MEGF8Q7Z7M0 2845 aa12.27□□□□□ -0.45
TMEM260-203ENST00000539559 CD164Q04900 197 aa12.27□□□□□ -0.45
TMEM260-203ENST00000539559 NDUFS5O43920 106 aa12.26□□□□□ -0.45
TMEM260-203ENST00000539559 MOBPQ13875 183 aa12.26□□□□□ -0.45
TMEM260-203ENST00000539559 IGHV6-1A0A0B4J1U7 121 aa12.25□□□□□ -0.45
TMEM260-203ENST00000539559 PRKDCP78527 4128 aaKnown RBP12.24□□□□□ -0.45
TMEM260-203ENST00000539559 IGLV7-46A0A075B6I9 117 aa12.23□□□□□ -0.45
TMEM260-203ENST00000539559 PLECQ15149 4684 aaKnown RBP12.23□□□□□ -0.45
TMEM260-203ENST00000539559 LIMD2Q9BT23 127 aa12.23□□□□□ -0.45
TMEM260-203ENST00000539559 C8orf17Q9NRJ1 99 aa12.22□□□□□ -0.45
TMEM260-203ENST00000539559 DNHD1Q96M86 4753 aa12.21□□□□□ -0.45
TMEM260-203ENST00000539559 A0A087X002 238 aa12.21□□□□□ -0.45
TMEM260-203ENST00000539559 NOTCH2NLQ7Z3S9 236 aa12.21□□□□□ -0.45
TMEM260-203ENST00000539559 SEC61GP60059 68 aa12.21□□□□□ -0.46
TMEM260-203ENST00000539559 FRAS1Q86XX4 4008 aa12.21□□□□□ -0.46
TMEM260-203ENST00000539559 SPTSSBQ8NFR3 76 aa12.19□□□□□ -0.46
TMEM260-203ENST00000539559 SPAG11AQ6PDA7 123 aa12.18□□□□□ -0.46
TMEM260-203ENST00000539559 ASB16-AS1Q495Z4 193 aa12.16□□□□□ -0.46
TMEM260-203ENST00000539559 LCA10Q71F78 164 aa12.16□□□□□ -0.46
TMEM260-203ENST00000539559 A6NED7 52 aa12.15□□□□□ -0.46
TMEM260-203ENST00000539559 Q6ZRN7 208 aaPredicted RBP12.15□□□□□ -0.46
TMEM260-203ENST00000539559 KRTAP21-3Q3LHN1 58 aa12.15□□□□□ -0.46
TMEM260-203ENST00000539559 SPACA4Q8TDM5 124 aa12.14□□□□□ -0.47
TMEM260-203ENST00000539559 A0A1B0GVX0 72 aa12.13□□□□□ -0.47
TMEM260-203ENST00000539559 TP53AIP1Q9HCN2 124 aa12.12□□□□□ -0.47
TMEM260-203ENST00000539559 WWC2-AS2Q96NR7 200 aa12.11□□□□□ -0.47
TMEM260-203ENST00000539559 Q6ZR54 194 aa12.11□□□□□ -0.47
TMEM260-203ENST00000539559 STARD9Q9P2P6 4700 aa12.1□□□□□ -0.47
TMEM260-203ENST00000539559 SPINK6Q6UWN8 80 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 108.3 ms