RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 A0A096LNI7 61 aa7.13□□□□□ -1.27
SYNE1-237ENST00000539504 NDUFB1O75438 58 aa7.13□□□□□ -1.27
SYNE1-237ENST00000539504 STAB1Q9NY15 2570 aa7.12□□□□□ -1.27
SYNE1-237ENST00000539504 V9GYY9 64 aa7.12□□□□□ -1.27
SYNE1-237ENST00000539504 TRAV22A0A0B4J277 110 aa7.11□□□□□ -1.27
SYNE1-237ENST00000539504 Q1T7F1 81 aa7.1□□□□□ -1.27
SYNE1-237ENST00000539504 CASC2Q6XLA1 102 aa7.1□□□□□ -1.27
SYNE1-237ENST00000539504 H0Y9P7 68 aa7.1□□□□□ -1.27
SYNE1-237ENST00000539504 B9D2Q9BPU9 175 aa7.09□□□□□ -1.27
SYNE1-237ENST00000539504 A8MUN3 132 aa7.09□□□□□ -1.28
SYNE1-237ENST00000539504 CYP4F30PQ9H0H9 118 aa7.08□□□□□ -1.28
SYNE1-237ENST00000539504 H0Y9J4 135 aa7.08□□□□□ -1.28
SYNE1-237ENST00000539504 COL6A5A8TX70 2615 aa7.07□□□□□ -1.28
SYNE1-237ENST00000539504 CHTF8P0CG12 524 aa7.06□□□□□ -1.28
SYNE1-237ENST00000539504 C16orf90A8MZG2 172 aa7.05□□□□□ -1.28
SYNE1-237ENST00000539504 PHF5AQ7RTV0 110 aaKnown RBP7.05□□□□□ -1.28
SYNE1-237ENST00000539504 PRR15Q8IV56 129 aa7.04□□□□□ -1.28
SYNE1-237ENST00000539504 UBE2DNLQ8IWF7 75 aa7.03□□□□□ -1.28
SYNE1-237ENST00000539504 NBEAL1Q6ZS30 2694 aa7.03□□□□□ -1.28
SYNE1-237ENST00000539504 CHKB-CPT1BH3BT56 60 aa7.02□□□□□ -1.29
SYNE1-237ENST00000539504 CNBPP62633 177 aaKnown RBP7.02□□□□□ -1.29
SYNE1-237ENST00000539504 IGLV8-61A0A075B6I0 122 aa7.02□□□□□ -1.29
SYNE1-237ENST00000539504 A8MWP4 228 aa7.02□□□□□ -1.29
SYNE1-237ENST00000539504 KRTAP29-1A8MX34 341 aaPredicted RBP7.01□□□□□ -1.29
SYNE1-237ENST00000539504 KRTAP24-1Q3LI83 254 aa7.01□□□□□ -1.29
SYNE1-237ENST00000539504 PRR15LQ9BU68 103 aa7.01□□□□□ -1.29
SYNE1-237ENST00000539504 PMAIP1Q13794 54 aa7□□□□□ -1.29
SYNE1-237ENST00000539504 FBN1P35555 2871 aaKnown RBP7□□□□□ -1.29
SYNE1-237ENST00000539504 PCOTHQ58A44 107 aa6.99□□□□□ -1.29
SYNE1-237ENST00000539504 SEC61GP60059 68 aa6.99□□□□□ -1.29
SYNE1-237ENST00000539504 KRTAP11-1Q8IUC1 163 aa6.99□□□□□ -1.29
SYNE1-237ENST00000539504 KRTAP1-5Q9BYS1 174 aa6.99□□□□□ -1.29
SYNE1-237ENST00000539504 SRRM2Q9UQ35 2752 aaKnown RBP6.99□□□□□ -1.29
SYNE1-237ENST00000539504 H3BPC8 53 aa6.98□□□□□ -1.29
SYNE1-237ENST00000539504 KMT2BQ9UMN6 2715 aaPredicted RBP6.98□□□□□ -1.29
SYNE1-237ENST00000539504 IGLV9-49A0A0B4J1Y8 123 aa6.97□□□□□ -1.29
SYNE1-237ENST00000539504 NDUFS5O43920 106 aa6.97□□□□□ -1.29
SYNE1-237ENST00000539504 SPANXA2-OT1Q8N9U9 137 aa6.97□□□□□ -1.29
SYNE1-237ENST00000539504 LINC00472Q9H8W2 130 aa6.97□□□□□ -1.29
SYNE1-237ENST00000539504 A8MU10 97 aa6.97□□□□□ -1.29
SYNE1-237ENST00000539504 Q5VV11 94 aa6.97□□□□□ -1.29
SYNE1-237ENST00000539504 SPTSSBQ8NFR3 76 aa6.97□□□□□ -1.29
SYNE1-237ENST00000539504 LIMD2Q9BT23 127 aa6.96□□□□□ -1.3
SYNE1-237ENST00000539504 Q8N9P0 234 aaPredicted RBP6.95□□□□□ -1.3
SYNE1-237ENST00000539504 ANK2Q01484 3957 aa6.94□□□□□ -1.3
SYNE1-237ENST00000539504 C14orf177Q52M58 125 aa6.94□□□□□ -1.3
SYNE1-237ENST00000539504 COA5Q86WW8 74 aa6.94□□□□□ -1.3
SYNE1-237ENST00000539504 MGAM2Q2M2H8 2515 aa6.94□□□□□ -1.3
SYNE1-237ENST00000539504 A6NED7 52 aa6.93□□□□□ -1.3
SYNE1-237ENST00000539504 MMP24-AS1A0A0U1RRL7 71 aa6.93□□□□□ -1.3
SYNE1-237ENST00000539504 SPRR1BP22528 89 aa6.92□□□□□ -1.3
SYNE1-237ENST00000539504 STAB2Q8WWQ8 2551 aa6.92□□□□□ -1.3
SYNE1-237ENST00000539504 K7EIL1 84 aa6.91□□□□□ -1.3
SYNE1-237ENST00000539504 C9orf163Q8N9P6 203 aa6.91□□□□□ -1.3
SYNE1-237ENST00000539504 IGHV6-1A0A0B4J1U7 121 aa6.91□□□□□ -1.3
SYNE1-237ENST00000539504 CDK2AP2O75956 126 aa6.91□□□□□ -1.3
SYNE1-237ENST00000539504 SPAG11AQ6PDA7 123 aa6.88□□□□□ -1.31
SYNE1-237ENST00000539504 IGLV7-46A0A075B6I9 117 aa6.88□□□□□ -1.31
SYNE1-237ENST00000539504 CSMD3Q7Z407 3707 aa6.87□□□□□ -1.31
SYNE1-237ENST00000539504 PANO1I0J062 215 aa6.87□□□□□ -1.31
SYNE1-237ENST00000539504 C8orf17Q9NRJ1 99 aa6.86□□□□□ -1.31
SYNE1-237ENST00000539504 TP53AIP1Q9HCN2 124 aa6.86□□□□□ -1.31
SYNE1-237ENST00000539504 CD164Q04900 197 aa6.86□□□□□ -1.31
SYNE1-237ENST00000539504 MOBPQ13875 183 aa6.85□□□□□ -1.31
SYNE1-237ENST00000539504 DNAH10Q8IVF4 4471 aa6.84□□□□□ -1.31
SYNE1-237ENST00000539504 SPINK6Q6UWN8 80 aa6.83□□□□□ -1.32
SYNE1-237ENST00000539504 ANAPC11Q9NYG5 84 aa6.83□□□□□ -1.32
SYNE1-237ENST00000539504 Q75L30 129 aa6.82□□□□□ -1.32
SYNE1-237ENST00000539504 TENM2Q9NT68 2774 aa6.82□□□□□ -1.32
SYNE1-237ENST00000539504 LCA10Q71F78 164 aa6.82□□□□□ -1.32
SYNE1-237ENST00000539504 LOC101927531A0A1B0GV80 90 aa6.82□□□□□ -1.32
SYNE1-237ENST00000539504 APLNQ9ULZ1 77 aa6.82□□□□□ -1.32
SYNE1-237ENST00000539504 DNAH1Q9P2D7 4330 aa6.81□□□□□ -1.32
SYNE1-237ENST00000539504 A0A1B0GVX0 72 aa6.81□□□□□ -1.32
SYNE1-237ENST00000539504 Q96NJ1 140 aa6.81□□□□□ -1.32
SYNE1-237ENST00000539504 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.8□□□□□ -1.32
SYNE1-237ENST00000539504 MRPL34Q9BQ48 92 aaKnown RBP6.8□□□□□ -1.32
SYNE1-237ENST00000539504 COL7A1Q02388 2944 aa6.79□□□□□ -1.32
SYNE1-237ENST00000539504 NBDYA0A0U1RRE5 68 aa6.79□□□□□ -1.32
SYNE1-237ENST00000539504 ATP11AUNQ6ZP68 121 aa6.79□□□□□ -1.32
SYNE1-237ENST00000539504 KRTAP13-1Q8IUC0 172 aa6.79□□□□□ -1.32
SYNE1-237ENST00000539504 HUWE1Q7Z6Z7 4374 aaKnown RBP6.78□□□□□ -1.32
SYNE1-237ENST00000539504 ZNF706Q9Y5V0 76 aaPredicted RBP6.77□□□□□ -1.33
SYNE1-237ENST00000539504 HRES1P13985 223 aa6.77□□□□□ -1.33
SYNE1-237ENST00000539504 A0A087X002 238 aa6.77□□□□□ -1.33
SYNE1-237ENST00000539504 Q6ZR54 194 aa6.77□□□□□ -1.33
SYNE1-237ENST00000539504 NOTCH2NLQ7Z3S9 236 aa6.77□□□□□ -1.33
SYNE1-237ENST00000539504 KTN1-AS1Q86SY8 53 aa6.77□□□□□ -1.33
SYNE1-237ENST00000539504 MDFIQ99750 246 aa6.76□□□□□ -1.33
SYNE1-237ENST00000539504 CDC42SE1Q9NRR8 79 aa6.76□□□□□ -1.33
SYNE1-237ENST00000539504 LINC01558Q9Y6Z2 57 aa6.76□□□□□ -1.33
SYNE1-237ENST00000539504 CMYA5Q8N3K9 4069 aa6.74□□□□□ -1.33
SYNE1-237ENST00000539504 ASB16-AS1Q495Z4 193 aa6.74□□□□□ -1.33
SYNE1-237ENST00000539504 SPACA4Q8TDM5 124 aa6.74□□□□□ -1.33
SYNE1-237ENST00000539504 PSORS1C2Q9UIG4 136 aa6.74□□□□□ -1.33
SYNE1-237ENST00000539504 PRR26Q8N8Z3 221 aa6.73□□□□□ -1.33
SYNE1-237ENST00000539504 WWC2-AS2Q96NR7 200 aa6.73□□□□□ -1.33
SYNE1-237ENST00000539504 LYSTQ99698 3801 aa6.73□□□□□ -1.33
SYNE1-237ENST00000539504 SPINK7P58062 85 aa6.73□□□□□ -1.33
SYNE1-237ENST00000539504 CIRBP-AS1Q8TBR5 109 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms