RNA–Protein interactions for RNA: ENST00000537750.5

SYNE1-236, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 2,850 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-236ENST00000537750 FLNBO75369 2602 aaKnown RBP9.44□□□□□ -0.9
SYNE1-236ENST00000537750 REG3GQ6UW15 175 aa9.43□□□□□ -0.9
SYNE1-236ENST00000537750 DEFB131BA0A096LNP1 70 aa9.42□□□□□ -0.9
SYNE1-236ENST00000537750 H0Y9P7 68 aa9.42□□□□□ -0.9
SYNE1-236ENST00000537750 PRLHP81277 87 aa9.42□□□□□ -0.9
SYNE1-236ENST00000537750 CHKB-CPT1BH3BT56 60 aa9.41□□□□□ -0.9
SYNE1-236ENST00000537750 KRTAP29-1A8MX34 341 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-236ENST00000537750 Q8N9P0 234 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-236ENST00000537750 OXLD1Q5BKU9 147 aa9.39□□□□□ -0.91
SYNE1-236ENST00000537750 HECTD1Q9ULT8 2610 aa9.39□□□□□ -0.91
SYNE1-236ENST00000537750 CASC2Q6XLA1 102 aa9.38□□□□□ -0.91
SYNE1-236ENST00000537750 PRR15LQ9BU68 103 aa9.38□□□□□ -0.91
SYNE1-236ENST00000537750 DNAH10OSP0CZ25 163 aa9.38□□□□□ -0.91
SYNE1-236ENST00000537750 FBN1P35555 2871 aaKnown RBP9.37□□□□□ -0.91
SYNE1-236ENST00000537750 INAFM1C9JVW0 142 aa9.37□□□□□ -0.91
SYNE1-236ENST00000537750 C16orf90A8MZG2 172 aa9.36□□□□□ -0.91
SYNE1-236ENST00000537750 CNBPP62633 177 aaKnown RBP9.36□□□□□ -0.91
SYNE1-236ENST00000537750 MAST4O15021 2626 aa9.36□□□□□ -0.91
SYNE1-236ENST00000537750 SPANXA2-OT1Q8N9U9 137 aa9.34□□□□□ -0.91
SYNE1-236ENST00000537750 SPTSSBQ8NFR3 76 aa9.34□□□□□ -0.91
SYNE1-236ENST00000537750 KRTAP10-11P60412 298 aa9.34□□□□□ -0.91
SYNE1-236ENST00000537750 IGKV2-24A0A0C4DH68 120 aa9.34□□□□□ -0.92
SYNE1-236ENST00000537750 C11orf45Q8TAV5 145 aa9.34□□□□□ -0.92
SYNE1-236ENST00000537750 DNAH1Q9P2D7 4330 aa9.33□□□□□ -0.92
SYNE1-236ENST00000537750 UBE2AP49459 152 aa9.33□□□□□ -0.92
SYNE1-236ENST00000537750 LIMD2Q9BT23 127 aa9.33□□□□□ -0.92
SYNE1-236ENST00000537750 LINC00588Q9Y4M8 146 aa9.32□□□□□ -0.92
SYNE1-236ENST00000537750 NOTCH1P46531 2555 aa9.32□□□□□ -0.92
SYNE1-236ENST00000537750 IGLV8-61A0A075B6I0 122 aa9.31□□□□□ -0.92
SYNE1-236ENST00000537750 C9orf163Q8N9P6 203 aa9.31□□□□□ -0.92
SYNE1-236ENST00000537750 A0A096LNI7 61 aa9.3□□□□□ -0.92
SYNE1-236ENST00000537750 LCA10Q71F78 164 aa9.3□□□□□ -0.92
SYNE1-236ENST00000537750 CSMD3Q7Z407 3707 aa9.3□□□□□ -0.92
SYNE1-236ENST00000537750 DNAH10Q8IVF4 4471 aa9.29□□□□□ -0.92
SYNE1-236ENST00000537750 COA5Q86WW8 74 aa9.29□□□□□ -0.92
SYNE1-236ENST00000537750 A8MWP4 228 aa9.28□□□□□ -0.92
SYNE1-236ENST00000537750 H3BPC8 53 aa9.28□□□□□ -0.92
SYNE1-236ENST00000537750 A6NED7 52 aa9.27□□□□□ -0.93
SYNE1-236ENST00000537750 CD164Q04900 197 aa9.27□□□□□ -0.93
SYNE1-236ENST00000537750 LINC00472Q9H8W2 130 aa9.27□□□□□ -0.93
SYNE1-236ENST00000537750 H0Y9J4 135 aa9.26□□□□□ -0.93
SYNE1-236ENST00000537750 PCOTHQ58A44 107 aa9.26□□□□□ -0.93
SYNE1-236ENST00000537750 COL6A5A8TX70 2615 aa9.26□□□□□ -0.93
SYNE1-236ENST00000537750 KRTAP11-1Q8IUC1 163 aa9.26□□□□□ -0.93
SYNE1-236ENST00000537750 STAB1Q9NY15 2570 aa9.24□□□□□ -0.93
SYNE1-236ENST00000537750 COL7A1Q02388 2944 aa9.24□□□□□ -0.93
SYNE1-236ENST00000537750 TENM2Q9NT68 2774 aa9.24□□□□□ -0.93
SYNE1-236ENST00000537750 J3QKU1 62 aa9.23□□□□□ -0.93
SYNE1-236ENST00000537750 Q75L30 129 aa9.23□□□□□ -0.93
SYNE1-236ENST00000537750 KTN1-AS1Q86SY8 53 aa9.22□□□□□ -0.93
SYNE1-236ENST00000537750 MMP24-AS1A0A0U1RRL7 71 aa9.22□□□□□ -0.93
SYNE1-236ENST00000537750 IGLV7-46A0A075B6I9 117 aa9.22□□□□□ -0.93
SYNE1-236ENST00000537750 PHF5AQ7RTV0 110 aaKnown RBP9.21□□□□□ -0.93
SYNE1-236ENST00000537750 NBEAL1Q6ZS30 2694 aa9.21□□□□□ -0.94
SYNE1-236ENST00000537750 LOC101927531A0A1B0GV80 90 aa9.21□□□□□ -0.94
SYNE1-236ENST00000537750 SPAG11AQ6PDA7 123 aa9.2□□□□□ -0.94
SYNE1-236ENST00000537750 CHTF8P0CG12 524 aa9.2□□□□□ -0.94
SYNE1-236ENST00000537750 ATP11AUNQ6ZP68 121 aa9.2□□□□□ -0.94
SYNE1-236ENST00000537750 LYSTQ99698 3801 aa9.19□□□□□ -0.94
SYNE1-236ENST00000537750 RBM12B-AS1Q9P1G2 102 aa9.18□□□□□ -0.94
SYNE1-236ENST00000537750 A6NN06 94 aa9.16□□□□□ -0.94
SYNE1-236ENST00000537750 SPRR1BP22528 89 aa9.14□□□□□ -0.95
SYNE1-236ENST00000537750 KRTAP1-5Q9BYS1 174 aa9.14□□□□□ -0.95
SYNE1-236ENST00000537750 CDC42SE1Q9NRR8 79 aa9.13□□□□□ -0.95
SYNE1-236ENST00000537750 CMYA5Q8N3K9 4069 aa9.13□□□□□ -0.95
SYNE1-236ENST00000537750 SPINK7P58062 85 aa9.1□□□□□ -0.95
SYNE1-236ENST00000537750 LINC01558Q9Y6Z2 57 aa9.1□□□□□ -0.95
SYNE1-236ENST00000537750 DNAH9Q9NYC9 4486 aa9.1□□□□□ -0.95
SYNE1-236ENST00000537750 NDUFS5O43920 106 aa9.1□□□□□ -0.95
SYNE1-236ENST00000537750 MOBPQ13875 183 aa9.1□□□□□ -0.95
SYNE1-236ENST00000537750 Q96NJ1 140 aa9.09□□□□□ -0.95
SYNE1-236ENST00000537750 IGLV9-49A0A0B4J1Y8 123 aa9.08□□□□□ -0.96
SYNE1-236ENST00000537750 HRES1P13985 223 aa9.08□□□□□ -0.96
SYNE1-236ENST00000537750 PLAC8Q9NZF1 115 aa9.08□□□□□ -0.96
SYNE1-236ENST00000537750 C8orf17Q9NRJ1 99 aa9.06□□□□□ -0.96
SYNE1-236ENST00000537750 IGHV6-1A0A0B4J1U7 121 aa9.06□□□□□ -0.96
SYNE1-236ENST00000537750 ASB16-AS1Q495Z4 193 aa9.06□□□□□ -0.96
SYNE1-236ENST00000537750 TP53AIP1Q9HCN2 124 aa9.05□□□□□ -0.96
SYNE1-236ENST00000537750 STAB2Q8WWQ8 2551 aa9.04□□□□□ -0.96
SYNE1-236ENST00000537750 Q6ZR54 194 aa9.04□□□□□ -0.96
SYNE1-236ENST00000537750 HUWE1Q7Z6Z7 4374 aaKnown RBP9.04□□□□□ -0.96
SYNE1-236ENST00000537750 DNAH3Q8TD57 4116 aa9.02□□□□□ -0.96
SYNE1-236ENST00000537750 PANO1I0J062 215 aa9.02□□□□□ -0.97
SYNE1-236ENST00000537750 A0A087X002 238 aa9.01□□□□□ -0.97
SYNE1-236ENST00000537750 NOTCH2NLQ7Z3S9 236 aa9.01□□□□□ -0.97
SYNE1-236ENST00000537750 K7EIL1 84 aa9.01□□□□□ -0.97
SYNE1-236ENST00000537750 C7orf65Q6ZTY9 151 aa9.01□□□□□ -0.97
SYNE1-236ENST00000537750 PRR26Q8N8Z3 221 aa9□□□□□ -0.97
SYNE1-236ENST00000537750 A0A1B0GVX0 72 aa8.98□□□□□ -0.97
SYNE1-236ENST00000537750 KRTAP13-1Q8IUC0 172 aa8.97□□□□□ -0.97
SYNE1-236ENST00000537750 MRPL34Q9BQ48 92 aaKnown RBP8.96□□□□□ -0.98
SYNE1-236ENST00000537750 ANAPC11Q9NYG5 84 aa8.94□□□□□ -0.98
SYNE1-236ENST00000537750 DNAH7Q8WXX0 4024 aa8.93□□□□□ -0.98
SYNE1-236ENST00000537750 CDK2AP2O75956 126 aa8.93□□□□□ -0.98
SYNE1-236ENST00000537750 KRTAP24-1Q3LI83 254 aa8.93□□□□□ -0.98
SYNE1-236ENST00000537750 Q5W150 140 aa8.92□□□□□ -0.98
SYNE1-236ENST00000537750 UBE2DNLQ8IWF7 75 aa8.91□□□□□ -0.98
SYNE1-236ENST00000537750 C14orf177Q52M58 125 aa8.9□□□□□ -0.99
SYNE1-236ENST00000537750 MGAM2Q2M2H8 2515 aa8.89□□□□□ -0.99
SYNE1-236ENST00000537750 PRAC1Q96KF2 57 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms