RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 PSORS1C2Q9UIG4 136 aa6.98□□□□□ -1.29
TRIM3-211ENST00000532542 TNP2Q05952 138 aa6.97□□□□□ -1.29
TRIM3-211ENST00000532542 AKAP9Q99996 3911 aa6.97□□□□□ -1.29
TRIM3-211ENST00000532542 FAM236DA0A1B0GTK5 79 aa6.96□□□□□ -1.29
TRIM3-211ENST00000532542 FAM236CP0DP71 79 aa6.96□□□□□ -1.29
TRIM3-211ENST00000532542 KRTAP4-16G5E9R7 235 aaPredicted RBP6.96□□□□□ -1.3
TRIM3-211ENST00000532542 CASC2Q6XLA1 102 aa6.96□□□□□ -1.3
TRIM3-211ENST00000532542 CUBNO60494 3623 aa6.96□□□□□ -1.3
TRIM3-211ENST00000532542 Q6ZR54 194 aa6.95□□□□□ -1.3
TRIM3-211ENST00000532542 RPL37AP61513 92 aaKnown RBP6.94□□□□□ -1.3
TRIM3-211ENST00000532542 KRTAP21-3Q3LHN1 58 aa6.94□□□□□ -1.3
TRIM3-211ENST00000532542 SPRR4Q96PI1 79 aa6.94□□□□□ -1.3
TRIM3-211ENST00000532542 TRRAPQ9Y4A5 3859 aa6.94□□□□□ -1.3
TRIM3-211ENST00000532542 Q6ZRN7 208 aaPredicted RBP6.93□□□□□ -1.3
TRIM3-211ENST00000532542 SMIM29Q86T20 159 aa6.93□□□□□ -1.3
TRIM3-211ENST00000532542 TMEM254Q8TBM7 123 aa6.93□□□□□ -1.3
TRIM3-211ENST00000532542 PKD1L1Q8TDX9 2849 aa6.93□□□□□ -1.3
TRIM3-211ENST00000532542 ATP5EP56381 51 aaPredicted RBP6.93□□□□□ -1.3
TRIM3-211ENST00000532542 PLAC8Q9NZF1 115 aa6.93□□□□□ -1.3
TRIM3-211ENST00000532542 IGLV7-43P04211 117 aa6.92□□□□□ -1.3
TRIM3-211ENST00000532542 IGHV6-1A0A0B4J1U7 121 aa6.92□□□□□ -1.3
TRIM3-211ENST00000532542 A0A0G2JQZ4 141 aa6.92□□□□□ -1.3
TRIM3-211ENST00000532542 C5orf47Q569G3 176 aa6.91□□□□□ -1.3
TRIM3-211ENST00000532542 K7EQZ3 153 aa6.9□□□□□ -1.31
TRIM3-211ENST00000532542 KRTAP7-1Q8IUC3 87 aa6.9□□□□□ -1.31
TRIM3-211ENST00000532542 SPRR1BP22528 89 aa6.9□□□□□ -1.31
TRIM3-211ENST00000532542 LINC00336Q6ZUF6 198 aa6.89□□□□□ -1.31
TRIM3-211ENST00000532542 A8MWP4 228 aa6.88□□□□□ -1.31
TRIM3-211ENST00000532542 LIMD2Q9BT23 127 aa6.88□□□□□ -1.31
TRIM3-211ENST00000532542 IGLV8-61A0A075B6I0 122 aa6.87□□□□□ -1.31
TRIM3-211ENST00000532542 SSBP3-AS1Q7Z2R9 100 aa6.87□□□□□ -1.31
TRIM3-211ENST00000532542 LINC00208Q96KT6 92 aa6.87□□□□□ -1.31
TRIM3-211ENST00000532542 PANO1I0J062 215 aa6.86□□□□□ -1.31
TRIM3-211ENST00000532542 hDV103S1A0JD37 113 aa6.85□□□□□ -1.31
TRIM3-211ENST00000532542 PRR15Q8IV56 129 aa6.84□□□□□ -1.31
TRIM3-211ENST00000532542 ANAPC11Q9NYG5 84 aa6.84□□□□□ -1.31
TRIM3-211ENST00000532542 A0A0U1RQV1 116 aa6.83□□□□□ -1.32
TRIM3-211ENST00000532542 H0Y9P7 68 aa6.83□□□□□ -1.32
TRIM3-211ENST00000532542 TP53AIP1Q9HCN2 124 aa6.82□□□□□ -1.32
TRIM3-211ENST00000532542 V9GYY9 64 aa6.82□□□□□ -1.32
TRIM3-211ENST00000532542 TYMSOSQ8TAI1 123 aa6.81□□□□□ -1.32
TRIM3-211ENST00000532542 PLA2G1BP04054 148 aaKnown RBP6.81□□□□□ -1.32
TRIM3-211ENST00000532542 DSCR10P59022 87 aa6.8□□□□□ -1.32
TRIM3-211ENST00000532542 SERP1Q9Y6X1 66 aa6.8□□□□□ -1.32
TRIM3-211ENST00000532542 KLKP1Q107X0 134 aa6.8□□□□□ -1.32
TRIM3-211ENST00000532542 H3BPC8 53 aa6.79□□□□□ -1.32
TRIM3-211ENST00000532542 KRTAP10-2P60368 255 aa6.79□□□□□ -1.32
TRIM3-211ENST00000532542 KRTAP11-1Q8IUC1 163 aa6.79□□□□□ -1.32
TRIM3-211ENST00000532542 C1orf64Q8NEQ6 169 aa6.77□□□□□ -1.33
TRIM3-211ENST00000532542 PRR4Q16378 134 aa6.77□□□□□ -1.33
TRIM3-211ENST00000532542 TRAV22A0A0B4J277 110 aa6.76□□□□□ -1.33
TRIM3-211ENST00000532542 A0A1B0GVX0 72 aa6.76□□□□□ -1.33
TRIM3-211ENST00000532542 CD164Q04900 197 aa6.75□□□□□ -1.33
TRIM3-211ENST00000532542 C8orf17Q9NRJ1 99 aa6.75□□□□□ -1.33
TRIM3-211ENST00000532542 FAM229AH3BQW9 127 aa6.75□□□□□ -1.33
TRIM3-211ENST00000532542 C8orf87E5RJ46 101 aa6.75□□□□□ -1.33
TRIM3-211ENST00000532542 LINC00483Q53H64 154 aa6.75□□□□□ -1.33
TRIM3-211ENST00000532542 SEC61GP60059 68 aa6.75□□□□□ -1.33
TRIM3-211ENST00000532542 RPS28P62857 69 aaKnown RBP6.74□□□□□ -1.33
TRIM3-211ENST00000532542 OCR1Q9BZK8 76 aa6.74□□□□□ -1.33
TRIM3-211ENST00000532542 KRTAP10-1P60331 282 aa6.74□□□□□ -1.33
TRIM3-211ENST00000532542 LCE6AA0A183 80 aa6.74□□□□□ -1.33
TRIM3-211ENST00000532542 FAM229BQ4G0N7 80 aa6.73□□□□□ -1.33
TRIM3-211ENST00000532542 MRPL34Q9BQ48 92 aaKnown RBP6.73□□□□□ -1.33
TRIM3-211ENST00000532542 SMIM26A0A096LP01 95 aa6.73□□□□□ -1.33
TRIM3-211ENST00000532542 LINC00313P59037 77 aa6.73□□□□□ -1.33
TRIM3-211ENST00000532542 BRK1Q8WUW1 75 aa6.73□□□□□ -1.33
TRIM3-211ENST00000532542 CHKB-CPT1BH3BT56 60 aa6.72□□□□□ -1.33
TRIM3-211ENST00000532542 SMR3BP02814 79 aaPredicted RBP6.72□□□□□ -1.33
TRIM3-211ENST00000532542 KRTAP13-1Q8IUC0 172 aa6.72□□□□□ -1.33
TRIM3-211ENST00000532542 LINC00472Q9H8W2 130 aa6.72□□□□□ -1.33
TRIM3-211ENST00000532542 H7BZZ5 65 aa6.71□□□□□ -1.34
TRIM3-211ENST00000532542 PCOTHQ58A44 107 aa6.7□□□□□ -1.34
TRIM3-211ENST00000532542 SPAG11AQ6PDA7 123 aa6.7□□□□□ -1.34
TRIM3-211ENST00000532542 LINC00304Q8N9R0 145 aa6.68□□□□□ -1.34
TRIM3-211ENST00000532542 MPLKIPQ8TAP9 179 aa6.68□□□□□ -1.34
TRIM3-211ENST00000532542 TENM2Q9NT68 2774 aa6.67□□□□□ -1.34
TRIM3-211ENST00000532542 SPINK1P00995 79 aa6.66□□□□□ -1.34
TRIM3-211ENST00000532542 RETNLBQ9BQ08 111 aa6.65□□□□□ -1.35
TRIM3-211ENST00000532542 C1orf195Q5TG92 126 aa6.64□□□□□ -1.35
TRIM3-211ENST00000532542 LOC101927531A0A1B0GV80 90 aa6.64□□□□□ -1.35
TRIM3-211ENST00000532542 MMP24-AS1A0A0U1RRL7 71 aa6.63□□□□□ -1.35
TRIM3-211ENST00000532542 TGP01266 2768 aa6.62□□□□□ -1.35
TRIM3-211ENST00000532542 Q96NJ1 140 aa6.6□□□□□ -1.35
TRIM3-211ENST00000532542 CYSTM1Q9H1C7 97 aa6.59□□□□□ -1.35
TRIM3-211ENST00000532542 PRR26Q8N8Z3 221 aa6.59□□□□□ -1.36
TRIM3-211ENST00000532542 IGKV2D-30A0A075B6S6 120 aa6.58□□□□□ -1.36
TRIM3-211ENST00000532542 IGKV2-30P06310 120 aa6.58□□□□□ -1.36
TRIM3-211ENST00000532542 Q6ZSA8 131 aa6.57□□□□□ -1.36
TRIM3-211ENST00000532542 HUWE1Q7Z6Z7 4374 aaKnown RBP6.55□□□□□ -1.36
TRIM3-211ENST00000532542 A0A087X002 238 aa6.55□□□□□ -1.36
TRIM3-211ENST00000532542 KRTAP29-1A8MX34 341 aaPredicted RBP6.55□□□□□ -1.36
TRIM3-211ENST00000532542 SPANXA2-OT1Q8N9U9 137 aa6.54□□□□□ -1.36
TRIM3-211ENST00000532542 ACYP2P14621 99 aa6.52□□□□□ -1.37
TRIM3-211ENST00000532542 ASB16-AS1Q495Z4 193 aa6.51□□□□□ -1.37
TRIM3-211ENST00000532542 FBN3Q75N90 2809 aa6.5□□□□□ -1.37
TRIM3-211ENST00000532542 PRR15LQ9BU68 103 aa6.49□□□□□ -1.37
TRIM3-211ENST00000532542 KRTAP13-2Q52LG2 175 aa6.47□□□□□ -1.37
TRIM3-211ENST00000532542 SPTSSBQ8NFR3 76 aa6.47□□□□□ -1.37
TRIM3-211ENST00000532542 CYP4F30PQ9H0H9 118 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms