RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 PRO1933Q9H354 126 aa6.17□□□□□ -1.42
VPS28-214ENST00000531032 F8WEM9 126 aa6.16□□□□□ -1.42
VPS28-214ENST00000531032 MT1HP80294 61 aa6.16□□□□□ -1.42
VPS28-214ENST00000531032 CRCT1Q9UGL9 99 aa6.16□□□□□ -1.42
VPS28-214ENST00000531032 IGLV8-61A0A075B6I0 122 aa6.15□□□□□ -1.42
VPS28-214ENST00000531032 C9orf92A6NGG3 77 aa6.15□□□□□ -1.42
VPS28-214ENST00000531032 H7C2G1 150 aa6.15□□□□□ -1.42
VPS28-214ENST00000531032 CD164Q04900 197 aa6.15□□□□□ -1.42
VPS28-214ENST00000531032 C12orf57Q99622 126 aa6.15□□□□□ -1.42
VPS28-214ENST00000531032 IGLV5-48A0A075B6I7 105 aa6.14□□□□□ -1.43
VPS28-214ENST00000531032 HIGD1BQ9P298 99 aa6.14□□□□□ -1.43
VPS28-214ENST00000531032 SMIM6P0DI80 62 aa6.13□□□□□ -1.43
VPS28-214ENST00000531032 Q5XG85 94 aa6.13□□□□□ -1.43
VPS28-214ENST00000531032 CFC1BP0CG36 223 aa6.12□□□□□ -1.43
VPS28-214ENST00000531032 hADV29S1A0JD25 119 aa6.11□□□□□ -1.43
VPS28-214ENST00000531032 BVES-AS1Q5T3Y7 98 aa6.11□□□□□ -1.43
VPS28-214ENST00000531032 LINC00575Q6W349 94 aa6.11□□□□□ -1.43
VPS28-214ENST00000531032 Q6ZQY7 126 aa6.11□□□□□ -1.43
VPS28-214ENST00000531032 SMIM29Q86T20 159 aa6.11□□□□□ -1.43
VPS28-214ENST00000531032 RAB37Q96AX2 223 aa6.1□□□□□ -1.43
VPS28-214ENST00000531032 C1orf195Q5TG92 126 aa6.09□□□□□ -1.43
VPS28-214ENST00000531032 UQCR10Q9UDW1 63 aa6.09□□□□□ -1.43
VPS28-214ENST00000531032 LORP23490 312 aaPredicted RBP6.08□□□□□ -1.44
VPS28-214ENST00000531032 A0A0G2JQZ4 141 aa6.07□□□□□ -1.44
VPS28-214ENST00000531032 SNCGO76070 127 aa6.07□□□□□ -1.44
VPS28-214ENST00000531032 FXYD2P54710 66 aa6.07□□□□□ -1.44
VPS28-214ENST00000531032 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.07□□□□□ -1.44
VPS28-214ENST00000531032 CEND1Q8N111 149 aa6.07□□□□□ -1.44
VPS28-214ENST00000531032 TMEM238LA0A1B0GVL6 79 aa6.06□□□□□ -1.44
VPS28-214ENST00000531032 A6NJY4 79 aa6.06□□□□□ -1.44
VPS28-214ENST00000531032 TCL1BO95988 128 aa6.06□□□□□ -1.44
VPS28-214ENST00000531032 CFC1P0CG37 223 aa6.06□□□□□ -1.44
VPS28-214ENST00000531032 KRTAP10-6P60371 365 aaPredicted RBP6.06□□□□□ -1.44
VPS28-214ENST00000531032 RPL37P61927 97 aaKnown RBP6.06□□□□□ -1.44
VPS28-214ENST00000531032 A0A0B4J2C4 111 aa6.05□□□□□ -1.44
VPS28-214ENST00000531032 Q6JHZ5 121 aa6.05□□□□□ -1.44
VPS28-214ENST00000531032 SNHG12Q9BXW3 62 aa6.05□□□□□ -1.44
VPS28-214ENST00000531032 HSD52Q0P140 79 aa6.04□□□□□ -1.44
VPS28-214ENST00000531032 PPDPFLQ8WWR9 84 aa6.04□□□□□ -1.44
VPS28-214ENST00000531032 CLEC2BQ92478 149 aa6.04□□□□□ -1.44
VPS28-214ENST00000531032 H0YGX0 51 aa6.01□□□□□ -1.45
VPS28-214ENST00000531032 OCIAD2Q56VL3 154 aa6.01□□□□□ -1.45
VPS28-214ENST00000531032 IGFL1Q6UW32 110 aa6.01□□□□□ -1.45
VPS28-214ENST00000531032 K7ERJ3 54 aa6□□□□□ -1.45
VPS28-214ENST00000531032 M0R2T5 61 aa6□□□□□ -1.45
VPS28-214ENST00000531032 TRBV7-7A0A0K0K1E9 115 aa5.99□□□□□ -1.45
VPS28-214ENST00000531032 H3BUT2 72 aa5.99□□□□□ -1.45
VPS28-214ENST00000531032 GHRHP01286 108 aa5.99□□□□□ -1.45
VPS28-214ENST00000531032 COX6B2Q6YFQ2 88 aa5.99□□□□□ -1.45
VPS28-214ENST00000531032 PRO1854Q9UHT4 67 aa5.99□□□□□ -1.45
VPS28-214ENST00000531032 TSTD3H0UI37 97 aa5.98□□□□□ -1.45
VPS28-214ENST00000531032 FLGP20930 4061 aaPredicted RBP5.98□□□□□ -1.45
VPS28-214ENST00000531032 FAM218AQ96MZ4 157 aa5.97□□□□□ -1.45
VPS28-214ENST00000531032 A0A1B0GX51 115 aa5.96□□□□□ -1.46
VPS28-214ENST00000531032 DNAL4O96015 105 aa5.96□□□□□ -1.46
VPS28-214ENST00000531032 FABP2P12104 132 aa5.95□□□□□ -1.46
VPS28-214ENST00000531032 PSMB2P49721 201 aa5.95□□□□□ -1.46
VPS28-214ENST00000531032 SS18L2Q9UHA2 77 aa5.95□□□□□ -1.46
VPS28-214ENST00000531032 LST1O00453 97 aa5.94□□□□□ -1.46
VPS28-214ENST00000531032 TRIAP1O43715 76 aa5.94□□□□□ -1.46
VPS28-214ENST00000531032 NDUFV3P56181 108 aaKnown RBP5.94□□□□□ -1.46
VPS28-214ENST00000531032 COX6CP09669 75 aa5.93□□□□□ -1.46
VPS28-214ENST00000531032 H3BMG7 143 aa5.92□□□□□ -1.46
VPS28-214ENST00000531032 Q75L30 129 aa5.92□□□□□ -1.46
VPS28-214ENST00000531032 M0R143 59 aa5.91□□□□□ -1.46
VPS28-214ENST00000531032 TEN1Q86WV5 123 aa5.91□□□□□ -1.46
VPS28-214ENST00000531032 OBSCN-AS1Q96MR7 158 aa5.91□□□□□ -1.46
VPS28-214ENST00000531032 A0A087WSZ3 146 aa5.9□□□□□ -1.46
VPS28-214ENST00000531032 ATP11AUNQ6ZP68 121 aa5.9□□□□□ -1.46
VPS28-214ENST00000531032 ORMDL1Q9P0S3 153 aa5.9□□□□□ -1.46
VPS28-214ENST00000531032 A0A1B0GV72 72 aa5.89□□□□□ -1.47
VPS28-214ENST00000531032 H3BQ85 93 aa5.89□□□□□ -1.47
VPS28-214ENST00000531032 BATFQ16520 125 aa5.89□□□□□ -1.47
VPS28-214ENST00000531032 Q6Q795 121 aa5.89□□□□□ -1.47
VPS28-214ENST00000531032 NAA38Q9BRA0 125 aaKnown RBP5.89□□□□□ -1.47
VPS28-214ENST00000531032 SCGB1C2P0DMR2 95 aa5.86□□□□□ -1.47
VPS28-214ENST00000531032 ANKRD29Q8N6D5 301 aa5.86□□□□□ -1.47
VPS28-214ENST00000531032 SIGMAR1Q99720 223 aa5.86□□□□□ -1.47
VPS28-214ENST00000531032 PCP4L1A6NKN8 68 aa5.85□□□□□ -1.47
VPS28-214ENST00000531032 TMEM256-PLSCR3K7ERE1 68 aa5.85□□□□□ -1.47
VPS28-214ENST00000531032 TAX1BP3O14907 124 aa5.85□□□□□ -1.47
VPS28-214ENST00000531032 Q96NJ1 140 aa5.84□□□□□ -1.47
VPS28-214ENST00000531032 C20orf166-AS1Q96NR2 134 aa5.83□□□□□ -1.48
VPS28-214ENST00000531032 A0A1W2PNM2 257 aa5.82□□□□□ -1.48
VPS28-214ENST00000531032 TRACP01848 142 aa5.82□□□□□ -1.48
VPS28-214ENST00000531032 TRBV7-4A0A0J9YYF1 115 aa5.81□□□□□ -1.48
VPS28-214ENST00000531032 A8MUU9 505 aa5.81□□□□□ -1.48
VPS28-214ENST00000531032 VPS25Q9BRG1 176 aa5.81□□□□□ -1.48
VPS28-214ENST00000531032 KRTAP9-8Q9BYQ0 159 aa5.81□□□□□ -1.48
VPS28-214ENST00000531032 C9orf118A6NHY6 69 aa5.8□□□□□ -1.48
VPS28-214ENST00000531032 CCKP06307 115 aa5.8□□□□□ -1.48
VPS28-214ENST00000531032 UBE2V1Q13404 147 aa5.8□□□□□ -1.48
VPS28-214ENST00000531032 IGKV4-1P06312 121 aa5.79□□□□□ -1.48
VPS28-214ENST00000531032 DSCR10P59022 87 aa5.78□□□□□ -1.48
VPS28-214ENST00000531032 DSCR8Q96T75 97 aa5.78□□□□□ -1.48
VPS28-214ENST00000531032 A0A1W2PPM0 123 aa5.77□□□□□ -1.49
VPS28-214ENST00000531032 RBM3P98179 157 aaKnown RBP5.77□□□□□ -1.49
VPS28-214ENST00000531032 TRBV20-1A0A075B6N2 111 aa5.76□□□□□ -1.49
VPS28-214ENST00000531032 COL5A1-AS1Q5SY13 56 aa5.76□□□□□ -1.49
VPS28-214ENST00000531032 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms