RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 KRTAP4-1Q9BYQ7 146 aa7.29□□□□□ -1.24
VPS28-211ENST00000530790 DLEU1O43261 78 aa7.28□□□□□ -1.24
VPS28-211ENST00000530790 TCL1BO95988 128 aa7.27□□□□□ -1.25
VPS28-211ENST00000530790 C1orf195Q5TG92 126 aa7.27□□□□□ -1.25
VPS28-211ENST00000530790 Q6JHZ5 121 aa7.26□□□□□ -1.25
VPS28-211ENST00000530790 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.26□□□□□ -1.25
VPS28-211ENST00000530790 PAM16Q9Y3D7 125 aa7.26□□□□□ -1.25
VPS28-211ENST00000530790 SPATA45Q537H7 98 aa7.25□□□□□ -1.25
VPS28-211ENST00000530790 CLEC2BQ92478 149 aa7.25□□□□□ -1.25
VPS28-211ENST00000530790 C14orf144Q96I85 54 aa7.25□□□□□ -1.25
VPS28-211ENST00000530790 PPDPFLQ8WWR9 84 aa7.24□□□□□ -1.25
VPS28-211ENST00000530790 RAB37Q96AX2 223 aa7.24□□□□□ -1.25
VPS28-211ENST00000530790 VAMP8Q9BV40 100 aa7.24□□□□□ -1.25
VPS28-211ENST00000530790 IGLV8-61A0A075B6I0 122 aa7.23□□□□□ -1.25
VPS28-211ENST00000530790 PCOTHQ58A44 107 aa7.23□□□□□ -1.25
VPS28-211ENST00000530790 HIGD1BQ9P298 99 aa7.23□□□□□ -1.25
VPS28-211ENST00000530790 CFC1BP0CG36 223 aa7.22□□□□□ -1.25
VPS28-211ENST00000530790 CFC1P0CG37 223 aa7.22□□□□□ -1.25
VPS28-211ENST00000530790 SMIM6P0DI80 62 aa7.22□□□□□ -1.25
VPS28-211ENST00000530790 IGFL1Q6UW32 110 aa7.22□□□□□ -1.25
VPS28-211ENST00000530790 A0A0B4J2C4 111 aa7.21□□□□□ -1.26
VPS28-211ENST00000530790 OCIAD2Q56VL3 154 aa7.21□□□□□ -1.26
VPS28-211ENST00000530790 SNHG12Q9BXW3 62 aa7.21□□□□□ -1.26
VPS28-211ENST00000530790 TRBV7-7A0A0K0K1E9 115 aa7.2□□□□□ -1.26
VPS28-211ENST00000530790 SNCGO76070 127 aa7.2□□□□□ -1.26
VPS28-211ENST00000530790 C2orf91Q6ZV80 131 aa7.2□□□□□ -1.26
VPS28-211ENST00000530790 KRTAP9-2Q9BYQ4 174 aa7.2□□□□□ -1.26
VPS28-211ENST00000530790 TMEM238LA0A1B0GVL6 79 aa7.18□□□□□ -1.26
VPS28-211ENST00000530790 A6NJY4 79 aa7.18□□□□□ -1.26
VPS28-211ENST00000530790 H0YGX0 51 aa7.18□□□□□ -1.26
VPS28-211ENST00000530790 H3BUT2 72 aa7.17□□□□□ -1.26
VPS28-211ENST00000530790 CEND1Q8N111 149 aa7.17□□□□□ -1.26
VPS28-211ENST00000530790 RPL37P61927 97 aaKnown RBP7.16□□□□□ -1.26
VPS28-211ENST00000530790 FAM218AQ96MZ4 157 aa7.15□□□□□ -1.26
VPS28-211ENST00000530790 PRO1854Q9UHT4 67 aa7.14□□□□□ -1.27
VPS28-211ENST00000530790 GHRHP01286 108 aa7.12□□□□□ -1.27
VPS28-211ENST00000530790 FXYD2P54710 66 aa7.12□□□□□ -1.27
VPS28-211ENST00000530790 SS18L2Q9UHA2 77 aa7.12□□□□□ -1.27
VPS28-211ENST00000530790 A0A1B0GX51 115 aa7.11□□□□□ -1.27
VPS28-211ENST00000530790 LST1O00453 97 aa7.11□□□□□ -1.27
VPS28-211ENST00000530790 NDUFV3P56181 108 aaKnown RBP7.11□□□□□ -1.27
VPS28-211ENST00000530790 LCE2CQ5TA81 110 aa7.11□□□□□ -1.27
VPS28-211ENST00000530790 Q6Q795 121 aa7.1□□□□□ -1.27
VPS28-211ENST00000530790 UQCR10Q9UDW1 63 aa7.1□□□□□ -1.27
VPS28-211ENST00000530790 TRIAP1O43715 76 aa7.09□□□□□ -1.27
VPS28-211ENST00000530790 HSD52Q0P140 79 aa7.09□□□□□ -1.27
VPS28-211ENST00000530790 KRTAP19-2Q3LHN2 52 aa7.09□□□□□ -1.27
VPS28-211ENST00000530790 TEN1Q86WV5 123 aa7.09□□□□□ -1.27
VPS28-211ENST00000530790 FABP2P12104 132 aa7.08□□□□□ -1.28
VPS28-211ENST00000530790 OBSCN-AS1Q96MR7 158 aa7.08□□□□□ -1.28
VPS28-211ENST00000530790 H3BMG7 143 aa7.07□□□□□ -1.28
VPS28-211ENST00000530790 A0A087WSZ3 146 aa7.06□□□□□ -1.28
VPS28-211ENST00000530790 DNAL4O96015 105 aa7.06□□□□□ -1.28
VPS28-211ENST00000530790 TSTD3H0UI37 97 aa7.05□□□□□ -1.28
VPS28-211ENST00000530790 K7ERJ3 54 aa7.05□□□□□ -1.28
VPS28-211ENST00000530790 PSMB2P49721 201 aa7.05□□□□□ -1.28
VPS28-211ENST00000530790 MT1HP80294 61 aa7.05□□□□□ -1.28
VPS28-211ENST00000530790 Q75L30 129 aa7.04□□□□□ -1.28
VPS28-211ENST00000530790 COX6CP09669 75 aa7.03□□□□□ -1.28
VPS28-211ENST00000530790 ATP11AUNQ6ZP68 121 aa7.03□□□□□ -1.28
VPS28-211ENST00000530790 ORMDL1Q9P0S3 153 aa7.03□□□□□ -1.28
VPS28-211ENST00000530790 H3BQ85 93 aa7.02□□□□□ -1.29
VPS28-211ENST00000530790 COX6B2Q6YFQ2 88 aa7.02□□□□□ -1.29
VPS28-211ENST00000530790 Q96NJ1 140 aa7.01□□□□□ -1.29
VPS28-211ENST00000530790 A0A1B0GV72 72 aa7□□□□□ -1.29
VPS28-211ENST00000530790 A0A1W2PNM2 257 aa6.99□□□□□ -1.29
VPS28-211ENST00000530790 PCP4L1A6NKN8 68 aa6.98□□□□□ -1.29
VPS28-211ENST00000530790 TMEM256-PLSCR3K7ERE1 68 aa6.98□□□□□ -1.29
VPS28-211ENST00000530790 ANKRD29Q8N6D5 301 aa6.98□□□□□ -1.29
VPS28-211ENST00000530790 SIGMAR1Q99720 223 aa6.98□□□□□ -1.29
VPS28-211ENST00000530790 KRTAP9-6A0A140TA67 174 aa6.97□□□□□ -1.29
VPS28-211ENST00000530790 LCE2DQ5TA82 110 aaPredicted RBP6.97□□□□□ -1.29
VPS28-211ENST00000530790 TRBV7-4A0A0J9YYF1 115 aa6.96□□□□□ -1.3
VPS28-211ENST00000530790 C20orf166-AS1Q96NR2 134 aa6.96□□□□□ -1.3
VPS28-211ENST00000530790 M0R2T5 61 aa6.95□□□□□ -1.3
VPS28-211ENST00000530790 DSCR10P59022 87 aa6.94□□□□□ -1.3
VPS28-211ENST00000530790 A8MUU9 505 aa6.93□□□□□ -1.3
VPS28-211ENST00000530790 TRACP01848 142 aa6.93□□□□□ -1.3
VPS28-211ENST00000530790 CCKP06307 115 aa6.93□□□□□ -1.3
VPS28-211ENST00000530790 SCGB1C2P0DMR2 95 aa6.93□□□□□ -1.3
VPS28-211ENST00000530790 UBE2V1Q13404 147 aa6.93□□□□□ -1.3
VPS28-211ENST00000530790 IGKV4-1P06312 121 aa6.92□□□□□ -1.3
VPS28-211ENST00000530790 M0R143 59 aa6.91□□□□□ -1.3
VPS28-211ENST00000530790 KRTAP10-6P60371 365 aaPredicted RBP6.91□□□□□ -1.3
VPS28-211ENST00000530790 BATFQ16520 125 aa6.91□□□□□ -1.3
VPS28-211ENST00000530790 LORP23490 312 aaPredicted RBP6.9□□□□□ -1.3
VPS28-211ENST00000530790 LINC00313P59037 77 aa6.89□□□□□ -1.31
VPS28-211ENST00000530790 VPS25Q9BRG1 176 aa6.89□□□□□ -1.31
VPS28-211ENST00000530790 RBM3P98179 157 aaKnown RBP6.87□□□□□ -1.31
VPS28-211ENST00000530790 DSCR8Q96T75 97 aa6.87□□□□□ -1.31
VPS28-211ENST00000530790 LINC00472Q9H8W2 130 aa6.87□□□□□ -1.31
VPS28-211ENST00000530790 DEFB116Q30KQ4 102 aa6.86□□□□□ -1.31
VPS28-211ENST00000530790 TRBV20-1A0A075B6N2 111 aa6.85□□□□□ -1.31
VPS28-211ENST00000530790 FLGP20930 4061 aaPredicted RBP6.85□□□□□ -1.31
VPS28-211ENST00000530790 IGHV6-1A0A0B4J1U7 121 aa6.84□□□□□ -1.31
VPS28-211ENST00000530790 KRTAP16-1A8MUX0 517 aa6.84□□□□□ -1.31
VPS28-211ENST00000530790 BAALC-AS2P0C853 105 aa6.83□□□□□ -1.32
VPS28-211ENST00000530790 NAA38Q9BRA0 125 aaKnown RBP6.83□□□□□ -1.32
VPS28-211ENST00000530790 C9JAW5 83 aa6.82□□□□□ -1.32
VPS28-211ENST00000530790 TAX1BP3O14907 124 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms