RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 TRAV13-2A0A0B4J235 113 aa12.18□□□□□ -0.46
CPSF1-202ENST00000527827 TRBV7-7A0A0K0K1E9 115 aa12.18□□□□□ -0.46
CPSF1-202ENST00000527827 KRTAP9-7A8MTY7 169 aa12.17□□□□□ -0.46
CPSF1-202ENST00000527827 SLC7A5P1Q8MH63 180 aa12.16□□□□□ -0.46
CPSF1-202ENST00000527827 KRTDAPP60985 99 aa12.15□□□□□ -0.46
CPSF1-202ENST00000527827 Q6JHZ5 121 aa12.15□□□□□ -0.46
CPSF1-202ENST00000527827 IGFL1Q6UW32 110 aa12.15□□□□□ -0.46
CPSF1-202ENST00000527827 CLEC2BQ92478 149 aa12.15□□□□□ -0.46
CPSF1-202ENST00000527827 LINC00575Q6W349 94 aa12.14□□□□□ -0.47
CPSF1-202ENST00000527827 KRTAP9-8Q9BYQ0 159 aa12.14□□□□□ -0.47
CPSF1-202ENST00000527827 Q6ZQY7 126 aa12.12□□□□□ -0.47
CPSF1-202ENST00000527827 SSPOA2VEC9 5147 aa12.11□□□□□ -0.47
CPSF1-202ENST00000527827 CFC1P0CG37 223 aa12.1□□□□□ -0.47
CPSF1-202ENST00000527827 VAMP3Q15836 100 aa12.1□□□□□ -0.47
CPSF1-202ENST00000527827 ATOH7Q8N100 152 aa12.1□□□□□ -0.47
CPSF1-202ENST00000527827 USH2AO75445 5202 aa12.09□□□□□ -0.47
CPSF1-202ENST00000527827 OCIAD2Q56VL3 154 aa12.09□□□□□ -0.47
CPSF1-202ENST00000527827 hADV29S1A0JD25 119 aa12.08□□□□□ -0.48
CPSF1-202ENST00000527827 C20orf202A1L168 122 aa12.07□□□□□ -0.48
CPSF1-202ENST00000527827 COA6Q5JTJ3 125 aaKnown RBP12.06□□□□□ -0.48
CPSF1-202ENST00000527827 Q96NJ1 140 aa12.04□□□□□ -0.48
CPSF1-202ENST00000527827 LST1O00453 97 aa12.02□□□□□ -0.49
CPSF1-202ENST00000527827 C20orf166-AS1Q96NR2 134 aa12□□□□□ -0.49
CPSF1-202ENST00000527827 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.99□□□□□ -0.49
CPSF1-202ENST00000527827 A8MUU9 505 aa11.97□□□□□ -0.49
CPSF1-202ENST00000527827 H3BUT2 72 aa11.97□□□□□ -0.49
CPSF1-202ENST00000527827 PPDPFLQ8WWR9 84 aa11.96□□□□□ -0.49
CPSF1-202ENST00000527827 SNHG12Q9BXW3 62 aa11.94□□□□□ -0.5
CPSF1-202ENST00000527827 SNRPEP62304 92 aaKnown RBP11.93□□□□□ -0.5
CPSF1-202ENST00000527827 TRBV20-1A0A075B6N2 111 aa11.92□□□□□ -0.5
CPSF1-202ENST00000527827 MT2AP02795 61 aa11.91□□□□□ -0.5
CPSF1-202ENST00000527827 SCGB1D1O95968 90 aa11.89□□□□□ -0.51
CPSF1-202ENST00000527827 SS18L2Q9UHA2 77 aa11.89□□□□□ -0.51
CPSF1-202ENST00000527827 FCGBPQ9Y6R7 5405 aaPredicted RBP11.89□□□□□ -0.51
CPSF1-202ENST00000527827 BVES-AS1Q5T3Y7 98 aa11.87□□□□□ -0.51
CPSF1-202ENST00000527827 C12orf57Q99622 126 aa11.85□□□□□ -0.51
CPSF1-202ENST00000527827 LCE2BO14633 110 aa11.84□□□□□ -0.51
CPSF1-202ENST00000527827 TEN1Q86WV5 123 aa11.83□□□□□ -0.52
CPSF1-202ENST00000527827 KRTAP19-1Q8IUB9 90 aa11.83□□□□□ -0.52
CPSF1-202ENST00000527827 KRTAP16-1A8MUX0 517 aa11.82□□□□□ -0.52
CPSF1-202ENST00000527827 MT1FP04733 61 aa11.82□□□□□ -0.52
CPSF1-202ENST00000527827 DSCR10P59022 87 aa11.82□□□□□ -0.52
CPSF1-202ENST00000527827 A0A087WSZ3 146 aa11.8□□□□□ -0.52
CPSF1-202ENST00000527827 KRTAP9-3Q9BYQ3 159 aa11.77□□□□□ -0.53
CPSF1-202ENST00000527827 HSBP1L1C9JCN9 74 aa11.76□□□□□ -0.53
CPSF1-202ENST00000527827 NDUFV3P56181 108 aaKnown RBP11.76□□□□□ -0.53
CPSF1-202ENST00000527827 FAM236DA0A1B0GTK5 79 aa11.75□□□□□ -0.53
CPSF1-202ENST00000527827 FAM236CP0DP71 79 aa11.75□□□□□ -0.53
CPSF1-202ENST00000527827 HIST1H4GQ99525 98 aa11.74□□□□□ -0.53
CPSF1-202ENST00000527827 MPLKIPQ8TAP9 179 aa11.73□□□□□ -0.53
CPSF1-202ENST00000527827 FAM218AQ96MZ4 157 aa11.71□□□□□ -0.53
CPSF1-202ENST00000527827 HIST1H2BLQ99880 126 aa11.71□□□□□ -0.53
CPSF1-202ENST00000527827 HRES1P13985 223 aa11.7□□□□□ -0.54
CPSF1-202ENST00000527827 KRTAP10-10P60014 251 aa11.7□□□□□ -0.54
CPSF1-202ENST00000527827 HIST3H2BBQ8N257 126 aa11.7□□□□□ -0.54
CPSF1-202ENST00000527827 SIGMAR1Q99720 223 aa11.69□□□□□ -0.54
CPSF1-202ENST00000527827 H3BMG7 143 aa11.68□□□□□ -0.54
CPSF1-202ENST00000527827 LINC00313P59037 77 aa11.68□□□□□ -0.54
CPSF1-202ENST00000527827 A0A1W2PNM2 257 aa11.66□□□□□ -0.54
CPSF1-202ENST00000527827 H0YGX0 51 aa11.66□□□□□ -0.54
CPSF1-202ENST00000527827 SNCGO76070 127 aa11.66□□□□□ -0.54
CPSF1-202ENST00000527827 RBM12B-AS1Q9P1G2 102 aa11.66□□□□□ -0.54
CPSF1-202ENST00000527827 S100A2P29034 98 aa11.63□□□□□ -0.55
CPSF1-202ENST00000527827 NOTCH2NLQ7Z3S9 236 aa11.63□□□□□ -0.55
CPSF1-202ENST00000527827 IGKV4-1P06312 121 aa11.61□□□□□ -0.55
CPSF1-202ENST00000527827 COX8AP10176 69 aa11.61□□□□□ -0.55
CPSF1-202ENST00000527827 RAB37Q96AX2 223 aa11.61□□□□□ -0.55
CPSF1-202ENST00000527827 FABP2P12104 132 aa11.59□□□□□ -0.55
CPSF1-202ENST00000527827 A0A0B4J2C4 111 aa11.57□□□□□ -0.56
CPSF1-202ENST00000527827 MACF1Q9UPN3 7388 aaKnown RBP11.56□□□□□ -0.56
CPSF1-202ENST00000527827 A0A1B0GX51 115 aa11.55□□□□□ -0.56
CPSF1-202ENST00000527827 DLEU1O43261 78 aa11.55□□□□□ -0.56
CPSF1-202ENST00000527827 GHRHP01286 108 aa11.54□□□□□ -0.56
CPSF1-202ENST00000527827 TRBV7-4A0A0J9YYF1 115 aa11.52□□□□□ -0.57
CPSF1-202ENST00000527827 DEFB116Q30KQ4 102 aa11.52□□□□□ -0.57
CPSF1-202ENST00000527827 LINC00472Q9H8W2 130 aa11.51□□□□□ -0.57
CPSF1-202ENST00000527827 ANKRD29Q8N6D5 301 aa11.5□□□□□ -0.57
CPSF1-202ENST00000527827 SYNE2Q8WXH0 6885 aaKnown RBP11.5□□□□□ -0.57
CPSF1-202ENST00000527827 KRTAP19-6Q3LI70 58 aa11.48□□□□□ -0.57
CPSF1-202ENST00000527827 HIGD1BQ9P298 99 aa11.48□□□□□ -0.57
CPSF1-202ENST00000527827 IGHV6-1A0A0B4J1U7 121 aa11.47□□□□□ -0.57
CPSF1-202ENST00000527827 C14orf144Q96I85 54 aa11.47□□□□□ -0.57
CPSF1-202ENST00000527827 A0A1B0GV72 72 aa11.45□□□□□ -0.58
CPSF1-202ENST00000527827 C2orf91Q6ZV80 131 aa11.44□□□□□ -0.58
CPSF1-202ENST00000527827 LINC00846Q9NV44 126 aa11.44□□□□□ -0.58
CPSF1-202ENST00000527827 PRO1854Q9UHT4 67 aa11.44□□□□□ -0.58
CPSF1-202ENST00000527827 MTURNQ8N3F0 131 aa11.43□□□□□ -0.58
CPSF1-202ENST00000527827 TRIAP1O43715 76 aa11.42□□□□□ -0.58
CPSF1-202ENST00000527827 S100A6P06703 90 aa11.42□□□□□ -0.58
CPSF1-202ENST00000527827 CCKP06307 115 aa11.39□□□□□ -0.59
CPSF1-202ENST00000527827 CEND1Q8N111 149 aa11.39□□□□□ -0.59
CPSF1-202ENST00000527827 ORMDL1Q9P0S3 153 aa11.39□□□□□ -0.59
CPSF1-202ENST00000527827 C8orf87E5RJ46 101 aa11.37□□□□□ -0.59
CPSF1-202ENST00000527827 TRACP01848 142 aa11.37□□□□□ -0.59
CPSF1-202ENST00000527827 A0A1B0GVX0 72 aa11.36□□□□□ -0.59
CPSF1-202ENST00000527827 SPINK7P58062 85 aa11.36□□□□□ -0.59
CPSF1-202ENST00000527827 ZCCHC13Q8WW36 166 aaKnown RBP11.36□□□□□ -0.59
CPSF1-202ENST00000527827 PAM16Q9Y3D7 125 aa11.36□□□□□ -0.59
CPSF1-202ENST00000527827 DNAL4O96015 105 aa11.35□□□□□ -0.59
CPSF1-202ENST00000527827 SPATA45Q537H7 98 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms