RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 DNAH6Q9C0G6 4158 aa3.39□□□□□ -1.87
CD44-218ENST00000525469 HSPG2P98160 4391 aa3.39□□□□□ -1.87
CD44-218ENST00000525469 IGHV7-81A0A0B4J1V7 117 aa3.38□□□□□ -1.87
CD44-218ENST00000525469 TRAV10A0A0B4J240 114 aa3.38□□□□□ -1.87
CD44-218ENST00000525469 IGHV3-35A0A0C4DH35 117 aa3.38□□□□□ -1.87
CD44-218ENST00000525469 PSCAO43653 123 aa3.38□□□□□ -1.87
CD44-218ENST00000525469 CCL18P55774 89 aa3.38□□□□□ -1.87
CD44-218ENST00000525469 C1orf64Q8NEQ6 169 aa3.38□□□□□ -1.87
CD44-218ENST00000525469 VPS13DQ5THJ4 4388 aa3.37□□□□□ -1.87
CD44-218ENST00000525469 IGHV3OR16-12A0A075B7B8 117 aa3.37□□□□□ -1.87
CD44-218ENST00000525469 IGHV4-28A0A0C4DH34 117 aa3.37□□□□□ -1.87
CD44-218ENST00000525469 IGHV3-38A0A0C4DH36 116 aa3.37□□□□□ -1.87
CD44-218ENST00000525469 LOC101927531A0A1B0GV80 90 aa3.37□□□□□ -1.87
CD44-218ENST00000525469 CHKB-CPT1BH3BT56 60 aa3.37□□□□□ -1.87
CD44-218ENST00000525469 MP68P56378 58 aa3.37□□□□□ -1.87
CD44-218ENST00000525469 KIAA0087Q14695 138 aa3.37□□□□□ -1.87
CD44-218ENST00000525469 FAM229BQ4G0N7 80 aa3.37□□□□□ -1.87
CD44-218ENST00000525469 HIGD2BQ4VC39 106 aa3.37□□□□□ -1.87
CD44-218ENST00000525469 LINC00575Q6W349 94 aa3.37□□□□□ -1.87
CD44-218ENST00000525469 FAM104AQ969W3 186 aa3.37□□□□□ -1.87
CD44-218ENST00000525469 ETDCA0A1B0GVM5 59 aa3.36□□□□□ -1.87
CD44-218ENST00000525469 HCG22E2RYF7 251 aa3.36□□□□□ -1.87
CD44-218ENST00000525469 C8orf87E5RJ46 101 aa3.36□□□□□ -1.87
CD44-218ENST00000525469 ODF3L2Q3SX64 289 aa3.36□□□□□ -1.87
CD44-218ENST00000525469 Q5VSD8 79 aa3.36□□□□□ -1.87
CD44-218ENST00000525469 Q8IZM0 81 aa3.36□□□□□ -1.87
CD44-218ENST00000525469 C11orf72Q8NBR9 251 aa3.36□□□□□ -1.87
CD44-218ENST00000525469 CDC42SE2Q9NRR3 84 aa3.36□□□□□ -1.87
CD44-218ENST00000525469 IGHV3-49A0A0A0MS15 119 aa3.35□□□□□ -1.87
CD44-218ENST00000525469 A6NN06 94 aa3.35□□□□□ -1.87
CD44-218ENST00000525469 K7EQG2 157 aa3.35□□□□□ -1.87
CD44-218ENST00000525469 IGHV3-23P01764 117 aa3.35□□□□□ -1.87
CD44-218ENST00000525469 PRM2P04554 102 aa3.35□□□□□ -1.87
CD44-218ENST00000525469 CASC2Q6XLA1 102 aa3.35□□□□□ -1.87
CD44-218ENST00000525469 RHPN1-AS1Q9BWJ2 59 aa3.35□□□□□ -1.87
CD44-218ENST00000525469 CELA1Q9UNI1 258 aa3.35□□□□□ -1.87
CD44-218ENST00000525469 S4R3C0 116 aa3.35□□□□□ -1.87
CD44-218ENST00000525469 DYNC1H1Q14204 4646 aaKnown RBP3.34□□□□□ -1.87
CD44-218ENST00000525469 PKD1P98161 4303 aa3.34□□□□□ -1.87
CD44-218ENST00000525469 FAT2Q9NYQ8 4349 aa3.34□□□□□ -1.87
CD44-218ENST00000525469 TRGV2A0A075B6R0 118 aa3.34□□□□□ -1.87
CD44-218ENST00000525469 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.34□□□□□ -1.87
CD44-218ENST00000525469 A6NED7 52 aa3.34□□□□□ -1.87
CD44-218ENST00000525469 PSPHP1O15172 72 aa3.34□□□□□ -1.87
CD44-218ENST00000525469 DEFB4AO15263 64 aa3.34□□□□□ -1.87
CD44-218ENST00000525469 C9orf129Q5T035 196 aaKnown RBP3.34□□□□□ -1.87
CD44-218ENST00000525469 Q5VV11 94 aa3.34□□□□□ -1.87
CD44-218ENST00000525469 Q6ZR54 194 aa3.34□□□□□ -1.87
CD44-218ENST00000525469 ZCCHC13Q8WW36 166 aaKnown RBP3.34□□□□□ -1.87
CD44-218ENST00000525469 LINC00208Q96KT6 92 aa3.34□□□□□ -1.87
CD44-218ENST00000525469 DNAH2Q9P225 4427 aa3.34□□□□□ -1.88
CD44-218ENST00000525469 DNAH11Q96DT5 4516 aa3.34□□□□□ -1.88
CD44-218ENST00000525469 IGHV3-66A0A0C4DH42 116 aa3.33□□□□□ -1.88
CD44-218ENST00000525469 A8MTW9 85 aa3.33□□□□□ -1.88
CD44-218ENST00000525469 A8MUN3 132 aa3.33□□□□□ -1.88
CD44-218ENST00000525469 IGKV4-1P06312 121 aa3.33□□□□□ -1.88
CD44-218ENST00000525469 COX6A2Q02221 97 aa3.33□□□□□ -1.88
CD44-218ENST00000525469 C9orf116Q5BN46 136 aaPredicted RBP3.33□□□□□ -1.88
CD44-218ENST00000525469 SPTSSBQ8NFR3 76 aa3.33□□□□□ -1.88
CD44-218ENST00000525469 HIGD2AQ9BW72 106 aa3.33□□□□□ -1.88
CD44-218ENST00000525469 DNAH17Q9UFH2 4485 aa3.33□□□□□ -1.88
CD44-218ENST00000525469 DEFB131BA0A096LNP1 70 aa3.32□□□□□ -1.88
CD44-218ENST00000525469 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.32□□□□□ -1.88
CD44-218ENST00000525469 Q6ZTI0 123 aa3.32□□□□□ -1.88
CD44-218ENST00000525469 TOMM7Q9P0U1 55 aa3.32□□□□□ -1.88
CD44-218ENST00000525469 IGHV3OR16-9A0A0B4J2B5 98 aa3.31□□□□□ -1.88
CD44-218ENST00000525469 INSP01308 110 aa3.31□□□□□ -1.88
CD44-218ENST00000525469 C6orf99Q4VX62 202 aa3.31□□□□□ -1.88
CD44-218ENST00000525469 LINC01554Q52M75 96 aa3.31□□□□□ -1.88
CD44-218ENST00000525469 RNASE13Q5GAN3 156 aaKnown RBP3.31□□□□□ -1.88
CD44-218ENST00000525469 KCNQ1DNQ9H478 68 aa3.31□□□□□ -1.88
CD44-218ENST00000525469 IGHV3OR16-13A0A075B7E8 117 aa3.3□□□□□ -1.88
CD44-218ENST00000525469 IGHV3OR16-8A0A075B7F1 116 aa3.3□□□□□ -1.88
CD44-218ENST00000525469 IGHV3-74A0A0B4J1X5 117 aa3.3□□□□□ -1.88
CD44-218ENST00000525469 IGLV9-49A0A0B4J1Y8 123 aa3.3□□□□□ -1.88
CD44-218ENST00000525469 PRB4P10163 310 aaPredicted RBP3.3□□□□□ -1.88
CD44-218ENST00000525469 CMC4P56277 68 aaPredicted RBP3.3□□□□□ -1.88
CD44-218ENST00000525469 NOTCH2NLQ7Z3S9 236 aa3.3□□□□□ -1.88
CD44-218ENST00000525469 PRR15LQ9BU68 103 aa3.3□□□□□ -1.88
CD44-218ENST00000525469 IGHV3-73A0A0B4J1V6 119 aa3.29□□□□□ -1.88
CD44-218ENST00000525469 IGLV6-57P01721 117 aa3.29□□□□□ -1.88
CD44-218ENST00000525469 SMR3BP02814 79 aaPredicted RBP3.29□□□□□ -1.88
CD44-218ENST00000525469 MT3P25713 68 aa3.29□□□□□ -1.88
CD44-218ENST00000525469 Q6ZQY7 126 aa3.29□□□□□ -1.88
CD44-218ENST00000525469 NBDYA0A0U1RRE5 68 aa3.28□□□□□ -1.88
CD44-218ENST00000525469 A0A1B0GUV1 79 aa3.28□□□□□ -1.88
CD44-218ENST00000525469 SPINK13Q1W4C9 94 aa3.28□□□□□ -1.88
CD44-218ENST00000525469 Q8NAQ8 132 aa3.28□□□□□ -1.88
CD44-218ENST00000525469 RETNLBQ9BQ08 111 aa3.28□□□□□ -1.88
CD44-218ENST00000525469 LINC01558Q9Y6Z2 57 aa3.28□□□□□ -1.88
CD44-218ENST00000525469 APOBP04114 4563 aaKnown RBP3.28□□□□□ -1.88
CD44-218ENST00000525469 SPAG11BQ08648 103 aa3.27□□□□□ -1.89
CD44-218ENST00000525469 SCXQ7RTU7 201 aa3.27□□□□□ -1.89
CD44-218ENST00000525469 MYCBP2O75592 4640 aa3.26□□□□□ -1.89
CD44-218ENST00000525469 LRP1BQ9NZR2 4599 aa3.26□□□□□ -1.89
CD44-218ENST00000525469 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.26□□□□□ -1.89
CD44-218ENST00000525469 GVQW2A0A096LPI5 108 aaPredicted RBP3.26□□□□□ -1.89
CD44-218ENST00000525469 IGLV5-52A0A0A0MRZ9 124 aa3.26□□□□□ -1.89
CD44-218ENST00000525469 SMIM29Q86T20 159 aa3.26□□□□□ -1.89
CD44-218ENST00000525469 DEFB104AQ8WTQ1 72 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms