RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 BOD1L1Q8NFC6 3051 aa1.87□□□□□ -2.11
CD44-217ENST00000525348 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.86□□□□□ -2.11
CD44-217ENST00000525348 NUPR2A6NF83 97 aa1.86□□□□□ -2.11
CD44-217ENST00000525348 H0Y9P7 68 aa1.86□□□□□ -2.11
CD44-217ENST00000525348 H3BPC8 53 aa1.86□□□□□ -2.11
CD44-217ENST00000525348 C10orf113Q5VZT2 155 aa1.86□□□□□ -2.11
CD44-217ENST00000525348 COA5Q86WW8 74 aa1.86□□□□□ -2.11
CD44-217ENST00000525348 SEC16AO15027 2179 aa1.86□□□□□ -2.11
CD44-217ENST00000525348 ADGRG4Q8IZF6 3080 aa1.86□□□□□ -2.11
CD44-217ENST00000525348 ITPR2Q14571 2701 aa1.85□□□□□ -2.11
CD44-217ENST00000525348 IGKV3OR2-268A0A0C4DH90 116 aa1.85□□□□□ -2.11
CD44-217ENST00000525348 ETDCA0A1B0GVM5 59 aa1.85□□□□□ -2.11
CD44-217ENST00000525348 NDUFA1O15239 70 aa1.85□□□□□ -2.11
CD44-217ENST00000525348 PDE6HQ13956 83 aa1.85□□□□□ -2.11
CD44-217ENST00000525348 DEFB133Q30KQ1 61 aa1.85□□□□□ -2.11
CD44-217ENST00000525348 ST20-AS1Q8NBB2 130 aa1.85□□□□□ -2.11
CD44-217ENST00000525348 SMIM11BQ8TCY0 68 aa1.85□□□□□ -2.11
CD44-217ENST00000525348 GAFA1Q96PS6 74 aa1.85□□□□□ -2.11
CD44-217ENST00000525348 KCNQ1DNQ9H478 68 aa1.85□□□□□ -2.11
CD44-217ENST00000525348 MINOS1-NBL1R4GNA1 71 aa1.85□□□□□ -2.11
CD44-217ENST00000525348 CSMD2Q7Z408 3487 aa1.85□□□□□ -2.11
CD44-217ENST00000525348 SPTAN1Q13813 2472 aaKnown RBP1.84□□□□□ -2.11
CD44-217ENST00000525348 TRGV2A0A075B6R0 118 aa1.84□□□□□ -2.11
CD44-217ENST00000525348 A0A087WTM6 91 aa1.84□□□□□ -2.11
CD44-217ENST00000525348 TRBV6-4A0A1B0GX49 114 aa1.84□□□□□ -2.11
CD44-217ENST00000525348 CCL3L1P16619 93 aa1.84□□□□□ -2.11
CD44-217ENST00000525348 KRTAP12-3P60328 96 aa1.84□□□□□ -2.11
CD44-217ENST00000525348 ERHP84090 104 aaKnown RBP1.84□□□□□ -2.11
CD44-217ENST00000525348 KRTAP21-2Q3LI59 83 aa1.84□□□□□ -2.11
CD44-217ENST00000525348 DMAC1Q96GE9 116 aa1.84□□□□□ -2.11
CD44-217ENST00000525348 LINC00472Q9H8W2 130 aa1.84□□□□□ -2.11
CD44-217ENST00000525348 U3KQA8 63 aa1.84□□□□□ -2.11
CD44-217ENST00000525348 USP9YO00507 2555 aaPredicted RBP1.84□□□□□ -2.12
CD44-217ENST00000525348 SETD2Q9BYW2 2564 aaPredicted RBP1.84□□□□□ -2.12
CD44-217ENST00000525348 F8P00451 2351 aa1.84□□□□□ -2.12
CD44-217ENST00000525348 FBN1P35555 2871 aaKnown RBP1.83□□□□□ -2.12
CD44-217ENST00000525348 IGHV3-64A0A075B6Q5 118 aa1.83□□□□□ -2.12
CD44-217ENST00000525348 TRGV4A0A0C4DH28 118 aa1.83□□□□□ -2.12
CD44-217ENST00000525348 RNASE3P12724 160 aaKnown RBP1.83□□□□□ -2.12
CD44-217ENST00000525348 POLR2KP53803 58 aaKnown RBP1.83□□□□□ -2.12
CD44-217ENST00000525348 KRTAP12-4P60329 112 aa1.83□□□□□ -2.12
CD44-217ENST00000525348 DEFB112Q30KQ8 113 aa1.83□□□□□ -2.12
CD44-217ENST00000525348 ZNRD1Q9P1U0 126 aa1.83□□□□□ -2.12
CD44-217ENST00000525348 SPTA1P02549 2419 aa1.83□□□□□ -2.12
CD44-217ENST00000525348 HIVEP1P15822 2718 aa1.83□□□□□ -2.12
CD44-217ENST00000525348 SORL1Q92673 2214 aa1.83□□□□□ -2.12
CD44-217ENST00000525348 AHCTF1Q8WYP5 2266 aa1.83□□□□□ -2.12
CD44-217ENST00000525348 USF3Q68DE3 2245 aa1.82□□□□□ -2.12
CD44-217ENST00000525348 H3BQ85 93 aa1.82□□□□□ -2.12
CD44-217ENST00000525348 RPL39P62891 51 aaKnown RBP1.82□□□□□ -2.12
CD44-217ENST00000525348 LINC00304Q8N9R0 145 aa1.82□□□□□ -2.12
CD44-217ENST00000525348 RPL39LQ96EH5 51 aaKnown RBP1.82□□□□□ -2.12
CD44-217ENST00000525348 PCNX1Q96RV3 2341 aa1.82□□□□□ -2.12
CD44-217ENST00000525348 APCP25054 2843 aa1.81□□□□□ -2.12
CD44-217ENST00000525348 A0A096LNT2 108 aa1.81□□□□□ -2.12
CD44-217ENST00000525348 UQCR11O14957 56 aa1.81□□□□□ -2.12
CD44-217ENST00000525348 ALMS1Q8TCU4 4167 aa1.81□□□□□ -2.12
CD44-217ENST00000525348 RTTNQ86VV8 2226 aa1.81□□□□□ -2.12
CD44-217ENST00000525348 SPG11Q96JI7 2443 aa1.8□□□□□ -2.12
CD44-217ENST00000525348 CENPEQ02224 2701 aa1.8□□□□□ -2.12
CD44-217ENST00000525348 A0A1B0GU33 70 aa1.8□□□□□ -2.12
CD44-217ENST00000525348 MGPP08493 103 aa1.8□□□□□ -2.12
CD44-217ENST00000525348 PRCDQ00LT1 54 aa1.8□□□□□ -2.12
CD44-217ENST00000525348 BRD3OSQ6XYD6 125 aa1.8□□□□□ -2.12
CD44-217ENST00000525348 LRRK2Q5S007 2527 aa1.8□□□□□ -2.12
CD44-217ENST00000525348 TLN1Q9Y490 2541 aaKnown RBP1.8□□□□□ -2.12
CD44-217ENST00000525348 LINC00158P58513 81 aa1.79□□□□□ -2.12
CD44-217ENST00000525348 PRB3Q04118 309 aaPredicted RBP1.79□□□□□ -2.12
CD44-217ENST00000525348 NBDYA0A0U1RRE5 68 aa1.78□□□□□ -2.12
CD44-217ENST00000525348 COX7BP24311 80 aa1.78□□□□□ -2.12
CD44-217ENST00000525348 KRTAP6-3Q3LI67 103 aa1.78□□□□□ -2.12
CD44-217ENST00000525348 LEAP2Q969E1 77 aa1.78□□□□□ -2.12
CD44-217ENST00000525348 Q96NJ1 140 aa1.78□□□□□ -2.12
CD44-217ENST00000525348 RNF5Q99942 180 aa1.78□□□□□ -2.12
CD44-217ENST00000525348 NIPBLQ6KC79 2804 aaeCLIP1.78□□□□□ -2.12
CD44-217ENST00000525348 SPTBN1Q01082 2364 aaKnown RBP1.78□□□□□ -2.12
CD44-217ENST00000525348 NAV3Q8IVL0 2385 aa1.78□□□□□ -2.12
CD44-217ENST00000525348 ZNF469Q96JG9 3925 aaPredicted RBP1.77□□□□□ -2.13
CD44-217ENST00000525348 SPTY2D1-AS1A0A0U1RR47 76 aa1.77□□□□□ -2.13
CD44-217ENST00000525348 H3BRN7 92 aa1.77□□□□□ -2.13
CD44-217ENST00000525348 I3L2K1 104 aa1.77□□□□□ -2.13
CD44-217ENST00000525348 HRES1P13985 223 aa1.77□□□□□ -2.13
CD44-217ENST00000525348 PATE1Q8WXA2 126 aa1.77□□□□□ -2.13
CD44-217ENST00000525348 DCHS2Q6V1P9 2916 aa1.77□□□□□ -2.13
CD44-217ENST00000525348 CUBNO60494 3623 aa1.77□□□□□ -2.13
CD44-217ENST00000525348 ANKHD1Q8IWZ3 2542 aaKnown RBP1.76□□□□□ -2.13
CD44-217ENST00000525348 HIVEP3Q5T1R4 2406 aa1.76□□□□□ -2.13
CD44-217ENST00000525348 ABCA2Q9BZC7 2435 aa1.76□□□□□ -2.13
CD44-217ENST00000525348 IGKV2-40A0A087WW87 121 aaPredicted RBP1.76□□□□□ -2.13
CD44-217ENST00000525348 IGKV2D-40P01614 121 aaPredicted RBP1.76□□□□□ -2.13
CD44-217ENST00000525348 LINC00575Q6W349 94 aa1.76□□□□□ -2.13
CD44-217ENST00000525348 Q6ZQY7 126 aa1.76□□□□□ -2.13
CD44-217ENST00000525348 NBASA2RRP1 2371 aa1.76□□□□□ -2.13
CD44-217ENST00000525348 NBEAL1Q6ZS30 2694 aa1.75□□□□□ -2.13
CD44-217ENST00000525348 TRGV1A0A0A0MS02 117 aa1.75□□□□□ -2.13
CD44-217ENST00000525348 SPINT4Q6UDR6 99 aa1.75□□□□□ -2.13
CD44-217ENST00000525348 CDKN2A-AS1Q9UH64 79 aa1.75□□□□□ -2.13
CD44-217ENST00000525348 TACC2O95359 2948 aa1.75□□□□□ -2.13
CD44-217ENST00000525348 FN1P02751 2386 aaKnown RBP1.74□□□□□ -2.13
CD44-217ENST00000525348 DEFB131BA0A096LNP1 70 aa1.74□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms