RNA–Protein interactions for RNA: ENST00000525209.5

CD44-213, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 574 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-213ENST00000525209 ZNF137PP52743 207 aa2.31□□□□□ -2.04
CD44-213ENST00000525209 FXYD4P59646 89 aa2.31□□□□□ -2.04
CD44-213ENST00000525209 LCE1FQ5T754 118 aa2.31□□□□□ -2.04
CD44-213ENST00000525209 IGFL1Q6UW32 110 aa2.31□□□□□ -2.04
CD44-213ENST00000525209 BAGE3Q86Y29 109 aa2.31□□□□□ -2.04
CD44-213ENST00000525209 LINC00846Q9NV44 126 aa2.31□□□□□ -2.04
CD44-213ENST00000525209 CUBNO60494 3623 aa2.31□□□□□ -2.04
CD44-213ENST00000525209 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.3□□□□□ -2.04
CD44-213ENST00000525209 FXYD6-FXYD2A0A087WZ82 144 aa2.3□□□□□ -2.04
CD44-213ENST00000525209 CTXND1A0A1B0GTU2 59 aa2.3□□□□□ -2.04
CD44-213ENST00000525209 LINC00208Q96KT6 92 aa2.3□□□□□ -2.04
CD44-213ENST00000525209 SPRR4Q96PI1 79 aa2.3□□□□□ -2.04
CD44-213ENST00000525209 PKD1L1Q8TDX9 2849 aa2.29□□□□□ -2.04
CD44-213ENST00000525209 NOTCH1P46531 2555 aa2.29□□□□□ -2.04
CD44-213ENST00000525209 MGAM2Q2M2H8 2515 aa2.29□□□□□ -2.04
CD44-213ENST00000525209 H3BVH4 76 aa2.29□□□□□ -2.04
CD44-213ENST00000525209 KRTAP10-5P60370 271 aa2.29□□□□□ -2.04
CD44-213ENST00000525209 Q6ZRN7 208 aaPredicted RBP2.29□□□□□ -2.04
CD44-213ENST00000525209 SNURFQ9Y675 71 aa2.29□□□□□ -2.04
CD44-213ENST00000525209 KRTAP10-8P60410 259 aa2.28□□□□□ -2.04
CD44-213ENST00000525209 Q96NJ1 140 aa2.28□□□□□ -2.04
CD44-213ENST00000525209 GNG13Q9P2W3 67 aa2.28□□□□□ -2.04
CD44-213ENST00000525209 PLCE1Q9P212 2302 aa2.28□□□□□ -2.05
CD44-213ENST00000525209 DNHD1Q96M86 4753 aa2.27□□□□□ -2.05
CD44-213ENST00000525209 S100A3P33764 101 aa2.27□□□□□ -2.05
CD44-213ENST00000525209 BRD3OSQ6XYD6 125 aa2.27□□□□□ -2.05
CD44-213ENST00000525209 CYYR1Q96J86 154 aa2.27□□□□□ -2.05
CD44-213ENST00000525209 WNK1Q9H4A3 2382 aa2.27□□□□□ -2.05
CD44-213ENST00000525209 IGKV4-1P06312 121 aa2.26□□□□□ -2.05
CD44-213ENST00000525209 COX17Q14061 63 aa2.26□□□□□ -2.05
CD44-213ENST00000525209 ATXN8Q156A1 80 aa2.26□□□□□ -2.05
CD44-213ENST00000525209 RPS27LQ71UM5 84 aaKnown RBP2.26□□□□□ -2.05
CD44-213ENST00000525209 DEFB107AQ8IZN7 70 aa2.26□□□□□ -2.05
CD44-213ENST00000525209 TRGV2A0A075B6R0 118 aa2.25□□□□□ -2.05
CD44-213ENST00000525209 TRGV1A0A0A0MS02 117 aa2.25□□□□□ -2.05
CD44-213ENST00000525209 TRAV1-2A0A0B4J238 106 aa2.25□□□□□ -2.05
CD44-213ENST00000525209 A0A1B0GUT8 65 aa2.25□□□□□ -2.05
CD44-213ENST00000525209 A0A096LNT2 108 aa2.24□□□□□ -2.05
CD44-213ENST00000525209 H0Y9P7 68 aa2.24□□□□□ -2.05
CD44-213ENST00000525209 DEFB112Q30KQ8 113 aa2.24□□□□□ -2.05
CD44-213ENST00000525209 GDF5OSQ5U4N7 250 aa2.24□□□□□ -2.05
CD44-213ENST00000525209 DEFB108BQ8NET1 73 aa2.24□□□□□ -2.05
CD44-213ENST00000525209 SMIM4Q8WVI0 70 aa2.24□□□□□ -2.05
CD44-213ENST00000525209 LINC00472Q9H8W2 130 aa2.24□□□□□ -2.05
CD44-213ENST00000525209 CAV3P56539 151 aa2.23□□□□□ -2.05
CD44-213ENST00000525209 SPINK7P58062 85 aa2.23□□□□□ -2.05
CD44-213ENST00000525209 PRB3Q04118 309 aaPredicted RBP2.23□□□□□ -2.05
CD44-213ENST00000525209 SPATA8Q6RVD6 105 aa2.23□□□□□ -2.05
CD44-213ENST00000525209 FAM103A1Q9BTL3 118 aaKnown RBP2.23□□□□□ -2.05
CD44-213ENST00000525209 NBEAL2Q6ZNJ1 2754 aa2.22□□□□□ -2.05
CD44-213ENST00000525209 TENM1Q9UKZ4 2725 aa2.22□□□□□ -2.05
CD44-213ENST00000525209 SNRPGP15A8MWD9 76 aa2.22□□□□□ -2.05
CD44-213ENST00000525209 RPL38P63173 70 aaKnown RBP2.22□□□□□ -2.05
CD44-213ENST00000525209 KRTAP5-1Q6L8H4 278 aa2.22□□□□□ -2.05
CD44-213ENST00000525209 Q6ZQY7 126 aa2.22□□□□□ -2.05
CD44-213ENST00000525209 SVEP1Q4LDE5 3571 aa2.21□□□□□ -2.05
CD44-213ENST00000525209 MEGF8Q7Z7M0 2845 aa2.21□□□□□ -2.06
CD44-213ENST00000525209 IFI6P09912 130 aa2.21□□□□□ -2.06
CD44-213ENST00000525209 ACYP2P14621 99 aa2.21□□□□□ -2.06
CD44-213ENST00000525209 TMEM263Q8WUH6 116 aaKnown RBP2.21□□□□□ -2.06
CD44-213ENST00000525209 FXYD6Q9H0Q3 95 aa2.21□□□□□ -2.06
CD44-213ENST00000525209 H3BUX3 64 aa2.2□□□□□ -2.06
CD44-213ENST00000525209 NDUFB1O75438 58 aa2.2□□□□□ -2.06
CD44-213ENST00000525209 KRTAP10-3P60369 221 aa2.2□□□□□ -2.06
CD44-213ENST00000525209 KRTAP10-12P60413 245 aa2.2□□□□□ -2.06
CD44-213ENST00000525209 VWFP04275 2813 aa2.19□□□□□ -2.06
CD44-213ENST00000525209 J3QRE1 110 aa2.19□□□□□ -2.06
CD44-213ENST00000525209 LY6G6CO95867 125 aa2.19□□□□□ -2.06
CD44-213ENST00000525209 ANK3Q12955 4377 aaKnown RBP2.19□□□□□ -2.06
CD44-213ENST00000525209 NOTCH3Q9UM47 2321 aa2.18□□□□□ -2.06
CD44-213ENST00000525209 KRTAP9-6A8MVA2 160 aa2.18□□□□□ -2.06
CD44-213ENST00000525209 K7EIL1 84 aa2.18□□□□□ -2.06
CD44-213ENST00000525209 C10orf113Q5VZT2 155 aa2.18□□□□□ -2.06
CD44-213ENST00000525209 PP632Q6XCG6 107 aa2.18□□□□□ -2.06
CD44-213ENST00000525209 ZCCHC13Q8WW36 166 aaKnown RBP2.18□□□□□ -2.06
CD44-213ENST00000525209 OBSCN-AS1Q96MR7 158 aa2.18□□□□□ -2.06
CD44-213ENST00000525209 TRAV21A0A0B4J279 112 aa2.17□□□□□ -2.06
CD44-213ENST00000525209 LINC01549A6NIU2 74 aa2.17□□□□□ -2.06
CD44-213ENST00000525209 CPSF4LA6NMK7 179 aaKnown RBP2.17□□□□□ -2.06
CD44-213ENST00000525209 H3BSH0 61 aa2.17□□□□□ -2.06
CD44-213ENST00000525209 NREPQ16612 68 aa2.17□□□□□ -2.06
CD44-213ENST00000525209 C10orf99Q6UWK7 81 aa2.17□□□□□ -2.06
CD44-213ENST00000525209 LCE6AA0A183 80 aa2.16□□□□□ -2.06
CD44-213ENST00000525209 ANK2Q01484 3957 aa2.16□□□□□ -2.06
CD44-213ENST00000525209 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.15□□□□□ -2.07
CD44-213ENST00000525209 COL7A1Q02388 2944 aa2.15□□□□□ -2.07
CD44-213ENST00000525209 TRRAPQ9Y4A5 3859 aa2.15□□□□□ -2.07
CD44-213ENST00000525209 TRBV30A0A0K0K1B3 111 aa2.14□□□□□ -2.07
CD44-213ENST00000525209 TRBV6-1A0A0K0K1D8 114 aa2.14□□□□□ -2.07
CD44-213ENST00000525209 UNQ6190/PRO20217Q6UXQ8 127 aa2.14□□□□□ -2.07
CD44-213ENST00000525209 SORL1Q92673 2214 aa2.13□□□□□ -2.07
CD44-213ENST00000525209 SPRR5A0A1B0GTR4 108 aa2.13□□□□□ -2.07
CD44-213ENST00000525209 DEFB136Q30KP8 78 aa2.13□□□□□ -2.07
CD44-213ENST00000525209 TENM2Q9NT68 2774 aa2.12□□□□□ -2.07
CD44-213ENST00000525209 G3V318 75 aa2.12□□□□□ -2.07
CD44-213ENST00000525209 KRTAP13-4Q3LI77 160 aa2.12□□□□□ -2.07
CD44-213ENST00000525209 LCE3CQ5T5A8 94 aa2.12□□□□□ -2.07
CD44-213ENST00000525209 WFDC9Q8NEX5 89 aa2.12□□□□□ -2.07
CD44-213ENST00000525209 SMIM11BQ8TCY0 68 aa2.12□□□□□ -2.07
CD44-213ENST00000525209 KRTAP4-4Q9BYR3 166 aa2.12□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms