RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 LAMA2P24043 3122 aaKnown RBP1.85□□□□□ -2.11
USP47-204ENST00000525078 XIRP2A4UGR9 3374 aa1.85□□□□□ -2.11
USP47-204ENST00000525078 NREPQ16612 68 aa1.85□□□□□ -2.11
USP47-204ENST00000525078 LAMA1P25391 3075 aa1.85□□□□□ -2.11
USP47-204ENST00000525078 COX7BP24311 80 aa1.84□□□□□ -2.11
USP47-204ENST00000525078 DEFB109BQ30KR1 87 aa1.84□□□□□ -2.11
USP47-204ENST00000525078 ZZEF1O43149 2961 aa1.83□□□□□ -2.12
USP47-204ENST00000525078 COL6A3P12111 3177 aa1.83□□□□□ -2.12
USP47-204ENST00000525078 LINC00158P58513 81 aa1.83□□□□□ -2.12
USP47-204ENST00000525078 KRTAP10-4P60372 401 aaPredicted RBP1.83□□□□□ -2.12
USP47-204ENST00000525078 PRO3102Q9H379 93 aa1.83□□□□□ -2.12
USP47-204ENST00000525078 TP53AIP1Q9HCN2 124 aa1.83□□□□□ -2.12
USP47-204ENST00000525078 LAMA3Q16787 3333 aa1.83□□□□□ -2.12
USP47-204ENST00000525078 DOPEY2Q9Y3R5 2298 aa1.83□□□□□ -2.12
USP47-204ENST00000525078 TNRC18O15417 2968 aaPredicted RBP1.82□□□□□ -2.12
USP47-204ENST00000525078 A0A0D9SG42 100 aa1.82□□□□□ -2.12
USP47-204ENST00000525078 LYNX1G3V0Z9 82 aa1.82□□□□□ -2.12
USP47-204ENST00000525078 DEFB1P60022 68 aa1.82□□□□□ -2.12
USP47-204ENST00000525078 PRB3Q04118 309 aaPredicted RBP1.82□□□□□ -2.12
USP47-204ENST00000525078 C10orf95Q9H7T3 257 aa1.82□□□□□ -2.12
USP47-204ENST00000525078 CDH23Q9H251 3354 aa1.82□□□□□ -2.12
USP47-204ENST00000525078 WNK2Q9Y3S1 2297 aa1.81□□□□□ -2.12
USP47-204ENST00000525078 SPTBN2O15020 2390 aa1.81□□□□□ -2.12
USP47-204ENST00000525078 VPS13AQ96RL7 3174 aa1.81□□□□□ -2.12
USP47-204ENST00000525078 PIEZO2Q9H5I5 2752 aa1.81□□□□□ -2.12
USP47-204ENST00000525078 NBEAQ8NFP9 2946 aa1.8□□□□□ -2.12
USP47-204ENST00000525078 CFAP54Q96N23 3096 aa1.8□□□□□ -2.12
USP47-204ENST00000525078 VCANP13611 3396 aa1.8□□□□□ -2.12
USP47-204ENST00000525078 IGLV5-48A0A075B6I7 105 aa1.8□□□□□ -2.12
USP47-204ENST00000525078 DEFB131AP59861 70 aa1.8□□□□□ -2.12
USP47-204ENST00000525078 DEFB104AQ8WTQ1 72 aa1.8□□□□□ -2.12
USP47-204ENST00000525078 KCNQ1DNQ9H478 68 aa1.8□□□□□ -2.12
USP47-204ENST00000525078 FRYQ5TBA9 3013 aa1.8□□□□□ -2.12
USP47-204ENST00000525078 PKDREJQ9NTG1 2253 aa1.79□□□□□ -2.12
USP47-204ENST00000525078 MUC19Q7Z5P9 8384 aa1.79□□□□□ -2.12
USP47-204ENST00000525078 ANKHD1Q8IWZ3 2542 aaKnown RBP1.79□□□□□ -2.12
USP47-204ENST00000525078 ETDCA0A1B0GVM5 59 aa1.79□□□□□ -2.12
USP47-204ENST00000525078 H3BUX3 64 aa1.79□□□□□ -2.12
USP47-204ENST00000525078 TOMM7Q9P0U1 55 aa1.79□□□□□ -2.12
USP47-204ENST00000525078 USP34Q70CQ2 3546 aa1.78□□□□□ -2.12
USP47-204ENST00000525078 FREM2Q5SZK8 3169 aa1.78□□□□□ -2.12
USP47-204ENST00000525078 TRIOO75962 3097 aa1.78□□□□□ -2.12
USP47-204ENST00000525078 PRO0255Q9UI72 69 aa1.78□□□□□ -2.12
USP47-204ENST00000525078 FRYLO94915 3013 aa1.78□□□□□ -2.12
USP47-204ENST00000525078 CFAP47Q6ZTR5 3102 aa1.77□□□□□ -2.13
USP47-204ENST00000525078 WDFY3Q8IZQ1 3526 aa1.77□□□□□ -2.13
USP47-204ENST00000525078 ABCA2Q9BZC7 2435 aa1.77□□□□□ -2.13
USP47-204ENST00000525078 DEFB124Q8NES8 71 aa1.77□□□□□ -2.13
USP47-204ENST00000525078 EP300Q09472 2414 aaPredicted RBP1.77□□□□□ -2.13
USP47-204ENST00000525078 PRUNE2Q8WUY3 3088 aa1.77□□□□□ -2.13
USP47-204ENST00000525078 PTPRQQ9UMZ3 2332 aa1.77□□□□□ -2.13
USP47-204ENST00000525078 SPEGQ15772 3267 aa1.76□□□□□ -2.13
USP47-204ENST00000525078 KALRNO60229 2985 aa1.76□□□□□ -2.13
USP47-204ENST00000525078 DSPP15924 2871 aaKnown RBP1.76□□□□□ -2.13
USP47-204ENST00000525078 APC2O95996 2303 aa1.75□□□□□ -2.13
USP47-204ENST00000525078 MAP1BP46821 2468 aaKnown RBP1.75□□□□□ -2.13
USP47-204ENST00000525078 SPTBN1Q01082 2364 aaKnown RBP1.75□□□□□ -2.13
USP47-204ENST00000525078 HTN1P15515 57 aa1.75□□□□□ -2.13
USP47-204ENST00000525078 NOP10Q9NPE3 64 aaKnown RBP1.75□□□□□ -2.13
USP47-204ENST00000525078 CEP250Q9BV73 2442 aa1.75□□□□□ -2.13
USP47-204ENST00000525078 CEP290O15078 2479 aa1.74□□□□□ -2.13
USP47-204ENST00000525078 SPRR1AP35321 89 aa1.74□□□□□ -2.13
USP47-204ENST00000525078 CRIPTQ9P021 101 aa1.74□□□□□ -2.13
USP47-204ENST00000525078 TPRP12270 2363 aaKnown RBP1.74□□□□□ -2.13
USP47-204ENST00000525078 FAM208BQ5VWN6 2430 aa1.74□□□□□ -2.13
USP47-204ENST00000525078 SPTBN5Q9NRC6 3674 aaKnown RBP1.73□□□□□ -2.13
USP47-204ENST00000525078 CNOT1A5YKK6 2376 aaKnown RBP1.73□□□□□ -2.13
USP47-204ENST00000525078 TRIOBPQ9H2D6 2365 aa1.73□□□□□ -2.13
USP47-204ENST00000525078 CELSR3Q9NYQ7 3312 aa1.73□□□□□ -2.13
USP47-204ENST00000525078 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.73□□□□□ -2.13
USP47-204ENST00000525078 ASH1LQ9NR48 2969 aaKnown RBP1.73□□□□□ -2.13
USP47-204ENST00000525078 H3BNG1 76 aa1.73□□□□□ -2.13
USP47-204ENST00000525078 LELP1Q5T871 98 aa1.73□□□□□ -2.13
USP47-204ENST00000525078 HRNRQ86YZ3 2850 aaPredicted RBP1.73□□□□□ -2.13
USP47-204ENST00000525078 DCHS1Q96JQ0 3298 aa1.72□□□□□ -2.13
USP47-204ENST00000525078 DMXL2Q8TDJ6 3036 aa1.72□□□□□ -2.13
USP47-204ENST00000525078 C6orf48Q9UBA6 75 aa1.72□□□□□ -2.13
USP47-204ENST00000525078 ANKRD17O75179 2603 aaKnown RBP1.72□□□□□ -2.13
USP47-204ENST00000525078 OTOGLQ3ZCN5 2332 aa1.72□□□□□ -2.13
USP47-204ENST00000525078 PCNX1Q96RV3 2341 aa1.71□□□□□ -2.14
USP47-204ENST00000525078 DEFB131BA0A096LNP1 70 aa1.71□□□□□ -2.14
USP47-204ENST00000525078 K7EQZ3 153 aa1.71□□□□□ -2.14
USP47-204ENST00000525078 MYO15AQ9UKN7 3530 aa1.71□□□□□ -2.14
USP47-204ENST00000525078 WDFY4Q6ZS81 3184 aa1.71□□□□□ -2.14
USP47-204ENST00000525078 ADGRG4Q8IZF6 3080 aa1.7□□□□□ -2.14
USP47-204ENST00000525078 PRRC2CQ9Y520 2896 aaKnown RBP1.7□□□□□ -2.14
USP47-204ENST00000525078 CACNA1HO95180 2353 aa1.7□□□□□ -2.14
USP47-204ENST00000525078 DEFB136Q30KP8 78 aa1.7□□□□□ -2.14
USP47-204ENST00000525078 AKAP13Q12802 2813 aa1.7□□□□□ -2.14
USP47-204ENST00000525078 SPENQ96T58 3664 aaKnown RBP1.7□□□□□ -2.14
USP47-204ENST00000525078 WNK1Q9H4A3 2382 aa1.7□□□□□ -2.14
USP47-204ENST00000525078 EYSQ5T1H1 3165 aa1.69□□□□□ -2.14
USP47-204ENST00000525078 TACC2O95359 2948 aa1.69□□□□□ -2.14
USP47-204ENST00000525078 DCHS2Q6V1P9 2916 aa1.69□□□□□ -2.14
USP47-204ENST00000525078 SPRR1BP22528 89 aa1.69□□□□□ -2.14
USP47-204ENST00000525078 CLPSL2Q6UWE3 100 aa1.69□□□□□ -2.14
USP47-204ENST00000525078 DEFB123Q8N688 67 aa1.69□□□□□ -2.14
USP47-204ENST00000525078 ACACAQ13085 2346 aa1.69□□□□□ -2.14
USP47-204ENST00000525078 ANKRD11Q6UB99 2663 aaPredicted RBP1.69□□□□□ -2.14
USP47-204ENST00000525078 MGAQ8IWI9 3026 aa1.69□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms