RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 OXTP01178 125 aa7.67□□□□□ -1.18
SYNPO-204ENST00000519664 Q8N377 158 aa7.67□□□□□ -1.18
SYNPO-204ENST00000519664 NBDYA0A0U1RRE5 68 aa7.67□□□□□ -1.18
SYNPO-204ENST00000519664 KTN1-AS1Q86SY8 53 aa7.67□□□□□ -1.18
SYNPO-204ENST00000519664 KCNQ1DNQ9H478 68 aa7.66□□□□□ -1.18
SYNPO-204ENST00000519664 CELSR1Q9NYQ6 3014 aa7.66□□□□□ -1.18
SYNPO-204ENST00000519664 IGLV1-50A0A075B6I6 118 aa7.66□□□□□ -1.18
SYNPO-204ENST00000519664 CYP4F30PQ9H0H9 118 aa7.66□□□□□ -1.18
SYNPO-204ENST00000519664 TRAV22A0A0B4J277 110 aa7.66□□□□□ -1.18
SYNPO-204ENST00000519664 K7EQZ3 153 aa7.66□□□□□ -1.18
SYNPO-204ENST00000519664 TRBV7-4A0A0J9YYF1 115 aa7.66□□□□□ -1.18
SYNPO-204ENST00000519664 FP248Q71RG6 208 aaPredicted RBP7.65□□□□□ -1.18
SYNPO-204ENST00000519664 CUBNO60494 3623 aa7.63□□□□□ -1.19
SYNPO-204ENST00000519664 ATP11AUNQ6ZP68 121 aa7.63□□□□□ -1.19
SYNPO-204ENST00000519664 SPINK1P00995 79 aa7.62□□□□□ -1.19
SYNPO-204ENST00000519664 H3BPC8 53 aa7.62□□□□□ -1.19
SYNPO-204ENST00000519664 Q8NDZ9 215 aa7.62□□□□□ -1.19
SYNPO-204ENST00000519664 SPACA4Q8TDM5 124 aa7.6□□□□□ -1.19
SYNPO-204ENST00000519664 CSMD1Q96PZ7 3565 aa7.6□□□□□ -1.19
SYNPO-204ENST00000519664 RTL8CO15255 209 aa7.6□□□□□ -1.19
SYNPO-204ENST00000519664 SMG1Q96Q15 3661 aaKnown RBP7.59□□□□□ -1.19
SYNPO-204ENST00000519664 IGFL1Q6UW32 110 aa7.59□□□□□ -1.19
SYNPO-204ENST00000519664 ANAPC11Q9NYG5 84 aa7.59□□□□□ -1.19
SYNPO-204ENST00000519664 Q1T7F1 81 aa7.58□□□□□ -1.2
SYNPO-204ENST00000519664 IGKV2D-30A0A075B6S6 120 aa7.58□□□□□ -1.2
SYNPO-204ENST00000519664 IGKV2-30P06310 120 aa7.58□□□□□ -1.2
SYNPO-204ENST00000519664 TENM4Q6N022 2769 aa7.58□□□□□ -1.2
SYNPO-204ENST00000519664 SPAG11AQ6PDA7 123 aa7.57□□□□□ -1.2
SYNPO-204ENST00000519664 C7orf65Q6ZTY9 151 aa7.57□□□□□ -1.2
SYNPO-204ENST00000519664 A0A1W2PNM2 257 aa7.56□□□□□ -1.2
SYNPO-204ENST00000519664 LCA10Q71F78 164 aa7.54□□□□□ -1.2
SYNPO-204ENST00000519664 LOC101927531A0A1B0GV80 90 aa7.53□□□□□ -1.2
SYNPO-204ENST00000519664 SVEP1Q4LDE5 3571 aa7.52□□□□□ -1.2
SYNPO-204ENST00000519664 C8orf87E5RJ46 101 aa7.52□□□□□ -1.21
SYNPO-204ENST00000519664 OCR1Q9BZK8 76 aa7.52□□□□□ -1.21
SYNPO-204ENST00000519664 RBM12B-AS1Q9P1G2 102 aa7.51□□□□□ -1.21
SYNPO-204ENST00000519664 FAM229BQ4G0N7 80 aa7.51□□□□□ -1.21
SYNPO-204ENST00000519664 C9orf163Q8N9P6 203 aa7.5□□□□□ -1.21
SYNPO-204ENST00000519664 COA5Q86WW8 74 aa7.49□□□□□ -1.21
SYNPO-204ENST00000519664 TLX1NBP0CAT3 122 aa7.49□□□□□ -1.21
SYNPO-204ENST00000519664 A8MWP4 228 aa7.48□□□□□ -1.21
SYNPO-204ENST00000519664 TP53AIP1Q9HCN2 124 aa7.48□□□□□ -1.21
SYNPO-204ENST00000519664 A0A087WTM6 91 aa7.45□□□□□ -1.22
SYNPO-204ENST00000519664 A0A1B0GU69 56 aa7.45□□□□□ -1.22
SYNPO-204ENST00000519664 CDC42SE1Q9NRR8 79 aa7.45□□□□□ -1.22
SYNPO-204ENST00000519664 IGLV5-48A0A075B6I7 105 aa7.44□□□□□ -1.22
SYNPO-204ENST00000519664 APLNQ9ULZ1 77 aa7.43□□□□□ -1.22
SYNPO-204ENST00000519664 FLG2Q5D862 2391 aaPredicted RBP7.43□□□□□ -1.22
SYNPO-204ENST00000519664 SPANXA2-OT1Q8N9U9 137 aa7.43□□□□□ -1.22
SYNPO-204ENST00000519664 PLA2G2DQ9UNK4 145 aa7.43□□□□□ -1.22
SYNPO-204ENST00000519664 LINC00313P59037 77 aa7.42□□□□□ -1.22
SYNPO-204ENST00000519664 PSORS1C2Q9UIG4 136 aa7.42□□□□□ -1.22
SYNPO-204ENST00000519664 IGLV8-61A0A075B6I0 122 aa7.41□□□□□ -1.22
SYNPO-204ENST00000519664 ACYP2P14621 99 aa7.41□□□□□ -1.22
SYNPO-204ENST00000519664 TYMSOSQ8TAI1 123 aa7.41□□□□□ -1.22
SYNPO-204ENST00000519664 ZNF861PO60384 105 aa7.4□□□□□ -1.22
SYNPO-204ENST00000519664 PLA2G1BP04054 148 aaKnown RBP7.4□□□□□ -1.22
SYNPO-204ENST00000519664 MRPL34Q9BQ48 92 aaKnown RBP7.4□□□□□ -1.23
SYNPO-204ENST00000519664 CNBPP62633 177 aaKnown RBP7.39□□□□□ -1.23
SYNPO-204ENST00000519664 DSCR10P59022 87 aa7.38□□□□□ -1.23
SYNPO-204ENST00000519664 C8orf17Q9NRJ1 99 aa7.38□□□□□ -1.23
SYNPO-204ENST00000519664 FBN1P35555 2871 aaKnown RBP7.38□□□□□ -1.23
SYNPO-204ENST00000519664 SMR3BP02814 79 aaPredicted RBP7.37□□□□□ -1.23
SYNPO-204ENST00000519664 DMBT1Q9UGM3 2413 aaPredicted RBP7.37□□□□□ -1.23
SYNPO-204ENST00000519664 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.36□□□□□ -1.23
SYNPO-204ENST00000519664 Q96NJ1 140 aa7.36□□□□□ -1.23
SYNPO-204ENST00000519664 WWC2-AS2Q96NR7 200 aa7.35□□□□□ -1.23
SYNPO-204ENST00000519664 KRTAP1-5Q9BYS1 174 aa7.35□□□□□ -1.23
SYNPO-204ENST00000519664 Q75L30 129 aa7.35□□□□□ -1.23
SYNPO-204ENST00000519664 SPRR4Q96PI1 79 aa7.34□□□□□ -1.23
SYNPO-204ENST00000519664 A0A1B0GVX0 72 aa7.34□□□□□ -1.24
SYNPO-204ENST00000519664 Q8N9P0 234 aaPredicted RBP7.33□□□□□ -1.24
SYNPO-204ENST00000519664 TENM1Q9UKZ4 2725 aa7.33□□□□□ -1.24
SYNPO-204ENST00000519664 IGLV5-37A0A075B6J1 123 aa7.33□□□□□ -1.24
SYNPO-204ENST00000519664 SPENQ96T58 3664 aaKnown RBP7.33□□□□□ -1.24
SYNPO-204ENST00000519664 Q5VV11 94 aa7.33□□□□□ -1.24
SYNPO-204ENST00000519664 KRTAP26-1Q6PEX3 210 aa7.32□□□□□ -1.24
SYNPO-204ENST00000519664 PKD1L1Q8TDX9 2849 aa7.32□□□□□ -1.24
SYNPO-204ENST00000519664 H3BS24 57 aa7.32□□□□□ -1.24
SYNPO-204ENST00000519664 TENM3Q9P273 2699 aa7.32□□□□□ -1.24
SYNPO-204ENST00000519664 TNP2Q05952 138 aa7.31□□□□□ -1.24
SYNPO-204ENST00000519664 UQCR11O14957 56 aa7.3□□□□□ -1.24
SYNPO-204ENST00000519664 VWFP04275 2813 aa7.3□□□□□ -1.24
SYNPO-204ENST00000519664 IGLV7-43P04211 117 aa7.3□□□□□ -1.24
SYNPO-204ENST00000519664 PDZD2O15018 2839 aa7.29□□□□□ -1.24
SYNPO-204ENST00000519664 FAM229AH3BQW9 127 aa7.28□□□□□ -1.24
SYNPO-204ENST00000519664 LINC01554Q52M75 96 aa7.27□□□□□ -1.25
SYNPO-204ENST00000519664 SPRR1AP35321 89 aa7.27□□□□□ -1.25
SYNPO-204ENST00000519664 SSBP3-AS1Q7Z2R9 100 aa7.27□□□□□ -1.25
SYNPO-204ENST00000519664 SPINT4Q6UDR6 99 aa7.26□□□□□ -1.25
SYNPO-204ENST00000519664 C9orf92A6NGG3 77 aa7.25□□□□□ -1.25
SYNPO-204ENST00000519664 MIR22HGQ0VDD5 57 aa7.25□□□□□ -1.25
SYNPO-204ENST00000519664 CSMD2Q7Z408 3487 aa7.23□□□□□ -1.25
SYNPO-204ENST00000519664 PRR26Q8N8Z3 221 aa7.23□□□□□ -1.25
SYNPO-204ENST00000519664 LINC01558Q9Y6Z2 57 aa7.22□□□□□ -1.25
SYNPO-204ENST00000519664 IGLV7-46A0A075B6I9 117 aa7.22□□□□□ -1.25
SYNPO-204ENST00000519664 ZFHX3Q15911 3703 aa7.21□□□□□ -1.25
SYNPO-204ENST00000519664 OTOGQ6ZRI0 2925 aa7.2□□□□□ -1.26
SYNPO-204ENST00000519664 LINC00304Q8N9R0 145 aa7.19□□□□□ -1.26
SYNPO-204ENST00000519664 PANO1I0J062 215 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms