RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 A0A1W2PNM2 257 aa8.23□□□□□ -1.09
USP53-209ENST00000514665 H3BPC8 53 aa8.23□□□□□ -1.09
USP53-209ENST00000514665 ZANQ9Y493 2812 aa8.21□□□□□ -1.09
USP53-209ENST00000514665 A8MUN3 132 aa8.21□□□□□ -1.1
USP53-209ENST00000514665 C7orf65Q6ZTY9 151 aa8.21□□□□□ -1.1
USP53-209ENST00000514665 OBSCN-AS1Q96MR7 158 aa8.21□□□□□ -1.1
USP53-209ENST00000514665 CELSR2Q9HCU4 2923 aa8.2□□□□□ -1.1
USP53-209ENST00000514665 A0A1B0GU69 56 aa8.2□□□□□ -1.1
USP53-209ENST00000514665 ACYP2P14621 99 aa8.2□□□□□ -1.1
USP53-209ENST00000514665 ANAPC11Q9NYG5 84 aa8.2□□□□□ -1.1
USP53-209ENST00000514665 SVEP1Q4LDE5 3571 aa8.2□□□□□ -1.1
USP53-209ENST00000514665 LINC00313P59037 77 aa8.2□□□□□ -1.1
USP53-209ENST00000514665 PRR15Q8IV56 129 aa8.2□□□□□ -1.1
USP53-209ENST00000514665 LINC01600Q96MT4 127 aa8.19□□□□□ -1.1
USP53-209ENST00000514665 TLX1NBP0CAT3 122 aa8.19□□□□□ -1.1
USP53-209ENST00000514665 C9orf163Q8N9P6 203 aa8.19□□□□□ -1.1
USP53-209ENST00000514665 CSMD1Q96PZ7 3565 aa8.18□□□□□ -1.1
USP53-209ENST00000514665 MRPL34Q9BQ48 92 aaKnown RBP8.17□□□□□ -1.1
USP53-209ENST00000514665 IGLV8-61A0A075B6I0 122 aa8.16□□□□□ -1.1
USP53-209ENST00000514665 TYMSOSQ8TAI1 123 aa8.16□□□□□ -1.1
USP53-209ENST00000514665 Q8NDZ9 215 aa8.15□□□□□ -1.1
USP53-209ENST00000514665 PLA2G2DQ9UNK4 145 aa8.15□□□□□ -1.11
USP53-209ENST00000514665 LINC00336Q6ZUF6 198 aa8.14□□□□□ -1.11
USP53-209ENST00000514665 COA5Q86WW8 74 aa8.14□□□□□ -1.11
USP53-209ENST00000514665 C8orf17Q9NRJ1 99 aa8.13□□□□□ -1.11
USP53-209ENST00000514665 HIVEP1P15822 2718 aa8.13□□□□□ -1.11
USP53-209ENST00000514665 IGLV5-48A0A075B6I7 105 aa8.12□□□□□ -1.11
USP53-209ENST00000514665 A0A087WTM6 91 aa8.11□□□□□ -1.11
USP53-209ENST00000514665 LOC101927531A0A1B0GV80 90 aa8.11□□□□□ -1.11
USP53-209ENST00000514665 ZNF861PO60384 105 aa8.11□□□□□ -1.11
USP53-209ENST00000514665 FLG2Q5D862 2391 aaPredicted RBP8.11□□□□□ -1.11
USP53-209ENST00000514665 PLA2G1BP04054 148 aaKnown RBP8.11□□□□□ -1.11
USP53-209ENST00000514665 Q96NJ1 140 aa8.11□□□□□ -1.11
USP53-209ENST00000514665 ATP11AUNQ6ZP68 121 aa8.1□□□□□ -1.11
USP53-209ENST00000514665 DSCR10P59022 87 aa8.1□□□□□ -1.11
USP53-209ENST00000514665 FAM229AH3BQW9 127 aa8.09□□□□□ -1.11
USP53-209ENST00000514665 WIPF1O43516 503 aa8.09□□□□□ -1.11
USP53-209ENST00000514665 PSORS1C2Q9UIG4 136 aa8.08□□□□□ -1.12
USP53-209ENST00000514665 A0A1B0GVX0 72 aa8.08□□□□□ -1.12
USP53-209ENST00000514665 CRYBG3Q68DQ2 2970 aa8.07□□□□□ -1.12
USP53-209ENST00000514665 NF1P21359 2839 aa8.06□□□□□ -1.12
USP53-209ENST00000514665 CNBPP62633 177 aaKnown RBP8.06□□□□□ -1.12
USP53-209ENST00000514665 NIPBLQ6KC79 2804 aaeCLIP8.06□□□□□ -1.12
USP53-209ENST00000514665 APLNQ9ULZ1 77 aa8.06□□□□□ -1.12
USP53-209ENST00000514665 WWC2-AS2Q96NR7 200 aa8.05□□□□□ -1.12
USP53-209ENST00000514665 C8orf87E5RJ46 101 aa8.05□□□□□ -1.12
USP53-209ENST00000514665 OCR1Q9BZK8 76 aa8.05□□□□□ -1.12
USP53-209ENST00000514665 DCHS2Q6V1P9 2916 aa8.04□□□□□ -1.12
USP53-209ENST00000514665 SPRR4Q96PI1 79 aa8.04□□□□□ -1.12
USP53-209ENST00000514665 APCP25054 2843 aa8.03□□□□□ -1.12
USP53-209ENST00000514665 SSBP3-AS1Q7Z2R9 100 aa8.03□□□□□ -1.12
USP53-209ENST00000514665 CYSTM1Q9H1C7 97 aa8.03□□□□□ -1.12
USP53-209ENST00000514665 KMT2BQ9UMN6 2715 aaPredicted RBP8.02□□□□□ -1.12
USP53-209ENST00000514665 IGLV5-37A0A075B6J1 123 aa8.02□□□□□ -1.12
USP53-209ENST00000514665 SMR3BP02814 79 aaPredicted RBP7.99□□□□□ -1.13
USP53-209ENST00000514665 FBN2P35556 2912 aa7.99□□□□□ -1.13
USP53-209ENST00000514665 IGLV7-43P04211 117 aa7.99□□□□□ -1.13
USP53-209ENST00000514665 CYP4F30PQ9H0H9 118 aa7.98□□□□□ -1.13
USP53-209ENST00000514665 CELSR1Q9NYQ6 3014 aa7.96□□□□□ -1.14
USP53-209ENST00000514665 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.95□□□□□ -1.14
USP53-209ENST00000514665 VPS13CQ709C8 3753 aa7.95□□□□□ -1.14
USP53-209ENST00000514665 DMBT1Q9UGM3 2413 aaPredicted RBP7.94□□□□□ -1.14
USP53-209ENST00000514665 C9orf92A6NGG3 77 aa7.93□□□□□ -1.14
USP53-209ENST00000514665 UQCR11O14957 56 aa7.92□□□□□ -1.14
USP53-209ENST00000514665 Q5XG85 94 aa7.92□□□□□ -1.14
USP53-209ENST00000514665 PRR26Q8N8Z3 221 aa7.92□□□□□ -1.14
USP53-209ENST00000514665 LINC00304Q8N9R0 145 aa7.92□□□□□ -1.14
USP53-209ENST00000514665 OXTP01178 125 aa7.92□□□□□ -1.14
USP53-209ENST00000514665 TNP2Q05952 138 aa7.9□□□□□ -1.14
USP53-209ENST00000514665 SPRR1AP35321 89 aa7.9□□□□□ -1.14
USP53-209ENST00000514665 CSMD2Q7Z408 3487 aa7.9□□□□□ -1.15
USP53-209ENST00000514665 SPANXA2-OT1Q8N9U9 137 aa7.9□□□□□ -1.15
USP53-209ENST00000514665 TENM4Q6N022 2769 aa7.88□□□□□ -1.15
USP53-209ENST00000514665 HRNRQ86YZ3 2850 aaPredicted RBP7.87□□□□□ -1.15
USP53-209ENST00000514665 KRTAP26-1Q6PEX3 210 aa7.87□□□□□ -1.15
USP53-209ENST00000514665 KRTAP1-5Q9BYS1 174 aa7.87□□□□□ -1.15
USP53-209ENST00000514665 MIR22HGQ0VDD5 57 aa7.86□□□□□ -1.15
USP53-209ENST00000514665 Q8N1X5 172 aa7.86□□□□□ -1.15
USP53-209ENST00000514665 FAM229BQ4G0N7 80 aa7.84□□□□□ -1.15
USP53-209ENST00000514665 ZFHX3Q15911 3703 aa7.83□□□□□ -1.16
USP53-209ENST00000514665 FP248Q71RG6 208 aaPredicted RBP7.82□□□□□ -1.16
USP53-209ENST00000514665 MMP24-AS1A0A0U1RRL7 71 aa7.8□□□□□ -1.16
USP53-209ENST00000514665 Q1T7F1 81 aa7.78□□□□□ -1.16
USP53-209ENST00000514665 IGLV7-46A0A075B6I9 117 aa7.77□□□□□ -1.16
USP53-209ENST00000514665 LINC00472Q9H8W2 130 aa7.76□□□□□ -1.17
USP53-209ENST00000514665 Q8N9P0 234 aaPredicted RBP7.75□□□□□ -1.17
USP53-209ENST00000514665 HRES1P13985 223 aa7.75□□□□□ -1.17
USP53-209ENST00000514665 MXRA5Q9NR99 2828 aa7.74□□□□□ -1.17
USP53-209ENST00000514665 NBPF19A0A087WUL8 3843 aa7.74□□□□□ -1.17
USP53-209ENST00000514665 KTN1-AS1Q86SY8 53 aa7.73□□□□□ -1.17
USP53-209ENST00000514665 SPRR1BP22528 89 aa7.73□□□□□ -1.17
USP53-209ENST00000514665 CDC42SE1Q9NRR8 79 aa7.73□□□□□ -1.17
USP53-209ENST00000514665 PLAC8Q9NZF1 115 aa7.71□□□□□ -1.18
USP53-209ENST00000514665 CD164Q04900 197 aa7.7□□□□□ -1.18
USP53-209ENST00000514665 KRTAP4-16G5E9R7 235 aaPredicted RBP7.69□□□□□ -1.18
USP53-209ENST00000514665 PANO1I0J062 215 aa7.68□□□□□ -1.18
USP53-209ENST00000514665 SPINT4Q6UDR6 99 aa7.68□□□□□ -1.18
USP53-209ENST00000514665 TENM3Q9P273 2699 aa7.68□□□□□ -1.18
USP53-209ENST00000514665 A0A0D9SG42 100 aa7.67□□□□□ -1.18
USP53-209ENST00000514665 LCA10Q71F78 164 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms