RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 ATMQ13315 3056 aa8.38□□□□□ -1.07
TCOF1-213ENST00000514442 UQCR11O14957 56 aa8.37□□□□□ -1.07
TCOF1-213ENST00000514442 SMR3BP02814 79 aaPredicted RBP8.37□□□□□ -1.07
TCOF1-213ENST00000514442 PLA2G2DQ9UNK4 145 aa8.37□□□□□ -1.07
TCOF1-213ENST00000514442 SPEGQ15772 3267 aa8.36□□□□□ -1.07
TCOF1-213ENST00000514442 IGLV7-46A0A075B6I9 117 aa8.36□□□□□ -1.07
TCOF1-213ENST00000514442 H3BS24 57 aa8.36□□□□□ -1.07
TCOF1-213ENST00000514442 MIR22HGQ0VDD5 57 aa8.36□□□□□ -1.07
TCOF1-213ENST00000514442 TNRC18O15417 2968 aaPredicted RBP8.35□□□□□ -1.07
TCOF1-213ENST00000514442 MRPL34Q9BQ48 92 aaKnown RBP8.35□□□□□ -1.07
TCOF1-213ENST00000514442 ZNF861PO60384 105 aa8.35□□□□□ -1.07
TCOF1-213ENST00000514442 LINC01558Q9Y6Z2 57 aa8.35□□□□□ -1.07
TCOF1-213ENST00000514442 FREM2Q5SZK8 3169 aa8.34□□□□□ -1.07
TCOF1-213ENST00000514442 COL6A5A8TX70 2615 aa8.34□□□□□ -1.07
TCOF1-213ENST00000514442 GCN1Q92616 2671 aaKnown RBP8.34□□□□□ -1.08
TCOF1-213ENST00000514442 Q96NJ1 140 aa8.33□□□□□ -1.08
TCOF1-213ENST00000514442 DMXL2Q8TDJ6 3036 aa8.33□□□□□ -1.08
TCOF1-213ENST00000514442 CNBPP62633 177 aaKnown RBP8.33□□□□□ -1.08
TCOF1-213ENST00000514442 C8orf17Q9NRJ1 99 aa8.33□□□□□ -1.08
TCOF1-213ENST00000514442 PSORS1C2Q9UIG4 136 aa8.33□□□□□ -1.08
TCOF1-213ENST00000514442 LINC01554Q52M75 96 aa8.33□□□□□ -1.08
TCOF1-213ENST00000514442 STAB1Q9NY15 2570 aa8.32□□□□□ -1.08
TCOF1-213ENST00000514442 NBEAQ8NFP9 2946 aa8.31□□□□□ -1.08
TCOF1-213ENST00000514442 FLNCQ14315 2725 aa8.3□□□□□ -1.08
TCOF1-213ENST00000514442 ADGRG4Q8IZF6 3080 aa8.3□□□□□ -1.08
TCOF1-213ENST00000514442 SETXQ7Z333 2677 aaKnown RBP8.29□□□□□ -1.08
TCOF1-213ENST00000514442 COL12A1Q99715 3063 aa8.29□□□□□ -1.08
TCOF1-213ENST00000514442 REV3LO60673 3130 aa8.29□□□□□ -1.08
TCOF1-213ENST00000514442 NOTCH1P46531 2555 aa8.29□□□□□ -1.08
TCOF1-213ENST00000514442 ZCCHC13Q8WW36 166 aaKnown RBP8.28□□□□□ -1.08
TCOF1-213ENST00000514442 PRAC1Q96KF2 57 aa8.28□□□□□ -1.08
TCOF1-213ENST00000514442 KALRNO60229 2985 aa8.27□□□□□ -1.08
TCOF1-213ENST00000514442 IGLV8-61A0A075B6I0 122 aa8.27□□□□□ -1.09
TCOF1-213ENST00000514442 IGLV7-43P04211 117 aa8.27□□□□□ -1.09
TCOF1-213ENST00000514442 TNP2Q05952 138 aa8.27□□□□□ -1.09
TCOF1-213ENST00000514442 IGLV5-37A0A075B6J1 123 aa8.25□□□□□ -1.09
TCOF1-213ENST00000514442 UBR5O95071 2799 aaPredicted RBP8.25□□□□□ -1.09
TCOF1-213ENST00000514442 A0A1B0GVX0 72 aa8.25□□□□□ -1.09
TCOF1-213ENST00000514442 LRBAP50851 2863 aa8.24□□□□□ -1.09
TCOF1-213ENST00000514442 NBEAL2Q6ZNJ1 2754 aa8.24□□□□□ -1.09
TCOF1-213ENST00000514442 TACC2O95359 2948 aa8.24□□□□□ -1.09
TCOF1-213ENST00000514442 LINC00304Q8N9R0 145 aa8.23□□□□□ -1.09
TCOF1-213ENST00000514442 SPINK7P58062 85 aa8.23□□□□□ -1.09
TCOF1-213ENST00000514442 SSBP3-AS1Q7Z2R9 100 aa8.22□□□□□ -1.09
TCOF1-213ENST00000514442 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.22□□□□□ -1.09
TCOF1-213ENST00000514442 PRR26Q8N8Z3 221 aa8.22□□□□□ -1.09
TCOF1-213ENST00000514442 BAHCC1Q9P281 2608 aa8.22□□□□□ -1.09
TCOF1-213ENST00000514442 C9orf92A6NGG3 77 aa8.21□□□□□ -1.09
TCOF1-213ENST00000514442 LCE6AA0A183 80 aa8.2□□□□□ -1.1
TCOF1-213ENST00000514442 A6NN06 94 aa8.2□□□□□ -1.1
TCOF1-213ENST00000514442 ITPR1Q14643 2758 aa8.18□□□□□ -1.1
TCOF1-213ENST00000514442 DMXL1Q9Y485 3027 aa8.18□□□□□ -1.1
TCOF1-213ENST00000514442 J3QL48 77 aa8.17□□□□□ -1.1
TCOF1-213ENST00000514442 HRES1P13985 223 aa8.17□□□□□ -1.1
TCOF1-213ENST00000514442 MMP24-AS1A0A0U1RRL7 71 aa8.15□□□□□ -1.1
TCOF1-213ENST00000514442 SPRR1AP35321 89 aa8.14□□□□□ -1.11
TCOF1-213ENST00000514442 KRTAP1-5Q9BYS1 174 aa8.14□□□□□ -1.11
TCOF1-213ENST00000514442 MYO15AQ9UKN7 3530 aa8.14□□□□□ -1.11
TCOF1-213ENST00000514442 SPINT4Q6UDR6 99 aa8.14□□□□□ -1.11
TCOF1-213ENST00000514442 USP34Q70CQ2 3546 aa8.14□□□□□ -1.11
TCOF1-213ENST00000514442 ZZEF1O43149 2961 aa8.13□□□□□ -1.11
TCOF1-213ENST00000514442 CFAP47Q6ZTR5 3102 aa8.13□□□□□ -1.11
TCOF1-213ENST00000514442 A8MU10 97 aa8.12□□□□□ -1.11
TCOF1-213ENST00000514442 UTP20O75691 2785 aaKnown RBP8.1□□□□□ -1.11
TCOF1-213ENST00000514442 ITPR2Q14571 2701 aa8.08□□□□□ -1.12
TCOF1-213ENST00000514442 CSAG1Q6PB30 78 aa8.07□□□□□ -1.12
TCOF1-213ENST00000514442 LINC00472Q9H8W2 130 aa8.07□□□□□ -1.12
TCOF1-213ENST00000514442 ASB16-AS1Q495Z4 193 aa8.07□□□□□ -1.12
TCOF1-213ENST00000514442 KRTAP29-1A8MX34 341 aaPredicted RBP8.07□□□□□ -1.12
TCOF1-213ENST00000514442 NBEAL1Q6ZS30 2694 aa8.06□□□□□ -1.12
TCOF1-213ENST00000514442 LOC400499M0QZD8 3231 aa8.05□□□□□ -1.12
TCOF1-213ENST00000514442 KRTAP26-1Q6PEX3 210 aa8.05□□□□□ -1.12
TCOF1-213ENST00000514442 PLAC8Q9NZF1 115 aa8□□□□□ -1.13
TCOF1-213ENST00000514442 NSD1Q96L73 2696 aaPredicted RBP8□□□□□ -1.13
TCOF1-213ENST00000514442 KRTAP4-16G5E9R7 235 aaPredicted RBP7.98□□□□□ -1.13
TCOF1-213ENST00000514442 HIVEP1P15822 2718 aa7.96□□□□□ -1.13
TCOF1-213ENST00000514442 Q8N1X5 172 aa7.96□□□□□ -1.14
TCOF1-213ENST00000514442 SPRR1BP22528 89 aa7.96□□□□□ -1.14
TCOF1-213ENST00000514442 COX6B2Q6YFQ2 88 aa7.96□□□□□ -1.14
TCOF1-213ENST00000514442 Q6ZR54 194 aa7.96□□□□□ -1.14
TCOF1-213ENST00000514442 APCP25054 2843 aa7.95□□□□□ -1.14
TCOF1-213ENST00000514442 ZANQ9Y493 2812 aa7.93□□□□□ -1.14
TCOF1-213ENST00000514442 ASH1LQ9NR48 2969 aaKnown RBP7.93□□□□□ -1.14
TCOF1-213ENST00000514442 KRTAP10-2P60368 255 aa7.92□□□□□ -1.14
TCOF1-213ENST00000514442 PANO1I0J062 215 aa7.9□□□□□ -1.14
TCOF1-213ENST00000514442 KRTAP10-1P60331 282 aa7.89□□□□□ -1.15
TCOF1-213ENST00000514442 SPATA8Q6RVD6 105 aa7.88□□□□□ -1.15
TCOF1-213ENST00000514442 HRNRQ86YZ3 2850 aaPredicted RBP7.88□□□□□ -1.15
TCOF1-213ENST00000514442 ADM2Q7Z4H4 148 aa7.88□□□□□ -1.15
TCOF1-213ENST00000514442 DMAC1Q96GE9 116 aa7.86□□□□□ -1.15
TCOF1-213ENST00000514442 CRYBG3Q68DQ2 2970 aa7.85□□□□□ -1.15
TCOF1-213ENST00000514442 CRIPTQ9P021 101 aa7.84□□□□□ -1.15
TCOF1-213ENST00000514442 CELSR2Q9HCU4 2923 aa7.84□□□□□ -1.15
TCOF1-213ENST00000514442 Q5W150 140 aa7.84□□□□□ -1.15
TCOF1-213ENST00000514442 STAB2Q8WWQ8 2551 aa7.83□□□□□ -1.16
TCOF1-213ENST00000514442 A0A1B0GU33 70 aa7.81□□□□□ -1.16
TCOF1-213ENST00000514442 WDFY3Q8IZQ1 3526 aa7.79□□□□□ -1.16
TCOF1-213ENST00000514442 A0A087X002 238 aa7.78□□□□□ -1.16
TCOF1-213ENST00000514442 RELNP78509 3460 aa7.76□□□□□ -1.17
TCOF1-213ENST00000514442 KMT2BQ9UMN6 2715 aaPredicted RBP7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms