RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 LINC00575Q6W349 94 aa5.04□□□□□ -1.6
PDGFC-205ENST00000506880 hADV29S1A0JD25 119 aa5.03□□□□□ -1.6
PDGFC-205ENST00000506880 LYRM7Q5U5X0 104 aa5.03□□□□□ -1.6
PDGFC-205ENST00000506880 LAMTOR3Q9UHA4 124 aa5.03□□□□□ -1.6
PDGFC-205ENST00000506880 TYMSOSQ8TAI1 123 aa5.02□□□□□ -1.61
PDGFC-205ENST00000506880 FAT3Q8TDW7 4589 aa5.01□□□□□ -1.61
PDGFC-205ENST00000506880 Q1RN00 199 aa5.01□□□□□ -1.61
PDGFC-205ENST00000506880 UBR4Q5T4S7 5183 aa5.01□□□□□ -1.61
PDGFC-205ENST00000506880 SPINK1P00995 79 aa5□□□□□ -1.61
PDGFC-205ENST00000506880 CD164Q04900 197 aa5□□□□□ -1.61
PDGFC-205ENST00000506880 Q8NBF4 154 aa5□□□□□ -1.61
PDGFC-205ENST00000506880 LRP1Q07954 4544 aaKnown RBP5□□□□□ -1.61
PDGFC-205ENST00000506880 TNXBP22105 4242 aa5□□□□□ -1.61
PDGFC-205ENST00000506880 HERC1Q15751 4861 aa5□□□□□ -1.61
PDGFC-205ENST00000506880 A0A087X002 238 aa4.99□□□□□ -1.61
PDGFC-205ENST00000506880 ERC2-IT1O76042 136 aa4.99□□□□□ -1.61
PDGFC-205ENST00000506880 C21orf62-AS1Q17RA5 79 aa4.99□□□□□ -1.61
PDGFC-205ENST00000506880 Q6JHZ5 121 aa4.99□□□□□ -1.61
PDGFC-205ENST00000506880 GAGE2AQ6NT46 116 aa4.99□□□□□ -1.61
PDGFC-205ENST00000506880 PRR26Q8N8Z3 221 aa4.99□□□□□ -1.61
PDGFC-205ENST00000506880 PRO1933Q9H354 126 aa4.99□□□□□ -1.61
PDGFC-205ENST00000506880 DNAL4O96015 105 aa4.98□□□□□ -1.61
PDGFC-205ENST00000506880 TRACP01848 142 aa4.98□□□□□ -1.61
PDGFC-205ENST00000506880 LINC00304Q8N9R0 145 aa4.98□□□□□ -1.61
PDGFC-205ENST00000506880 IGLV8-61A0A075B6I0 122 aa4.97□□□□□ -1.61
PDGFC-205ENST00000506880 TRBV20-1A0A075B6N2 111 aa4.97□□□□□ -1.61
PDGFC-205ENST00000506880 F8WEM9 126 aa4.97□□□□□ -1.61
PDGFC-205ENST00000506880 TRIAP1O43715 76 aa4.97□□□□□ -1.61
PDGFC-205ENST00000506880 PSMB2P49721 201 aa4.97□□□□□ -1.61
PDGFC-205ENST00000506880 KRTAP13-2Q52LG2 175 aa4.97□□□□□ -1.61
PDGFC-205ENST00000506880 H7C2G1 150 aa4.96□□□□□ -1.62
PDGFC-205ENST00000506880 TMEM256-PLSCR3K7ERE1 68 aa4.96□□□□□ -1.62
PDGFC-205ENST00000506880 TSPAN13O95857 204 aa4.96□□□□□ -1.62
PDGFC-205ENST00000506880 LINC01547P58512 204 aaPredicted RBP4.96□□□□□ -1.62
PDGFC-205ENST00000506880 Q5XG85 94 aa4.96□□□□□ -1.62
PDGFC-205ENST00000506880 Q6ZQY7 126 aa4.96□□□□□ -1.62
PDGFC-205ENST00000506880 Q8N377 158 aa4.95□□□□□ -1.62
PDGFC-205ENST00000506880 LIMD2Q9BT23 127 aa4.94□□□□□ -1.62
PDGFC-205ENST00000506880 SNHG12Q9BXW3 62 aa4.94□□□□□ -1.62
PDGFC-205ENST00000506880 ORMDL1Q9P0S3 153 aa4.94□□□□□ -1.62
PDGFC-205ENST00000506880 LST1O00453 97 aa4.93□□□□□ -1.62
PDGFC-205ENST00000506880 SCGB1C2P0DMR2 95 aa4.93□□□□□ -1.62
PDGFC-205ENST00000506880 UBE2V1Q13404 147 aa4.93□□□□□ -1.62
PDGFC-205ENST00000506880 FP248Q71RG6 208 aaPredicted RBP4.93□□□□□ -1.62
PDGFC-205ENST00000506880 SMIM29Q86T20 159 aa4.93□□□□□ -1.62
PDGFC-205ENST00000506880 ST20-AS1Q8NBB2 130 aa4.93□□□□□ -1.62
PDGFC-205ENST00000506880 MOBPQ13875 183 aa4.92□□□□□ -1.62
PDGFC-205ENST00000506880 ATXN8Q156A1 80 aa4.92□□□□□ -1.62
PDGFC-205ENST00000506880 C9orf153Q5TBE3 101 aa4.92□□□□□ -1.62
PDGFC-205ENST00000506880 Q6Q795 121 aa4.92□□□□□ -1.62
PDGFC-205ENST00000506880 C3orf22Q8N5N4 141 aa4.92□□□□□ -1.62
PDGFC-205ENST00000506880 IGLV9-49A0A0B4J1Y8 123 aa4.91□□□□□ -1.62
PDGFC-205ENST00000506880 A0A1B0GW54 56 aa4.91□□□□□ -1.62
PDGFC-205ENST00000506880 K7ERJ3 54 aa4.91□□□□□ -1.62
PDGFC-205ENST00000506880 COL5A1-AS1Q5SY13 56 aa4.91□□□□□ -1.62
PDGFC-205ENST00000506880 CLEC2BQ92478 149 aa4.91□□□□□ -1.62
PDGFC-205ENST00000506880 C9orf118A6NHY6 69 aa4.9□□□□□ -1.63
PDGFC-205ENST00000506880 ASB16-AS1Q495Z4 193 aa4.9□□□□□ -1.63
PDGFC-205ENST00000506880 DEFB105AQ8NG35 78 aa4.9□□□□□ -1.63
PDGFC-205ENST00000506880 ANAPC11Q9NYG5 84 aa4.9□□□□□ -1.63
PDGFC-205ENST00000506880 PDE6GP18545 87 aa4.89□□□□□ -1.63
PDGFC-205ENST00000506880 NDUFV3P56181 108 aaKnown RBP4.89□□□□□ -1.63
PDGFC-205ENST00000506880 FAM218AQ96MZ4 157 aa4.89□□□□□ -1.63
PDGFC-205ENST00000506880 JMJD7-PLA2G4BH0Y9G9 81 aa4.88□□□□□ -1.63
PDGFC-205ENST00000506880 TCL1BO95988 128 aa4.88□□□□□ -1.63
PDGFC-205ENST00000506880 FABP2P12104 132 aa4.88□□□□□ -1.63
PDGFC-205ENST00000506880 SS18L2Q9UHA2 77 aa4.88□□□□□ -1.63
PDGFC-205ENST00000506880 TEN1Q86WV5 123 aa4.87□□□□□ -1.63
PDGFC-205ENST00000506880 A0A1W2PPM0 123 aa4.86□□□□□ -1.63
PDGFC-205ENST00000506880 BATFQ16520 125 aa4.86□□□□□ -1.63
PDGFC-205ENST00000506880 TRBV7-4A0A0J9YYF1 115 aa4.85□□□□□ -1.63
PDGFC-205ENST00000506880 H3BMG7 143 aa4.85□□□□□ -1.63
PDGFC-205ENST00000506880 H3BT86 120 aa4.85□□□□□ -1.63
PDGFC-205ENST00000506880 TAX1BP3O14907 124 aa4.85□□□□□ -1.63
PDGFC-205ENST00000506880 TPRXLQ17RH7 258 aa4.85□□□□□ -1.63
PDGFC-205ENST00000506880 TRBV7-7A0A0K0K1E9 115 aa4.84□□□□□ -1.63
PDGFC-205ENST00000506880 H3BUT2 72 aa4.84□□□□□ -1.63
PDGFC-205ENST00000506880 BAALC-AS2P0C853 105 aa4.84□□□□□ -1.63
PDGFC-205ENST00000506880 RBM3P98179 157 aaKnown RBP4.84□□□□□ -1.63
PDGFC-205ENST00000506880 IGFL1Q6UW32 110 aa4.83□□□□□ -1.64
PDGFC-205ENST00000506880 ANKRD29Q8N6D5 301 aa4.83□□□□□ -1.64
PDGFC-205ENST00000506880 DSCR8Q96T75 97 aa4.83□□□□□ -1.64
PDGFC-205ENST00000506880 LOC110117498A0A087WWA1 95 aa4.81□□□□□ -1.64
PDGFC-205ENST00000506880 GTF2H5Q6ZYL4 71 aa4.81□□□□□ -1.64
PDGFC-205ENST00000506880 IGLV7-46A0A075B6I9 117 aa4.8□□□□□ -1.64
PDGFC-205ENST00000506880 C9JAW5 83 aa4.8□□□□□ -1.64
PDGFC-205ENST00000506880 OBSCN-AS1Q96MR7 158 aa4.8□□□□□ -1.64
PDGFC-205ENST00000506880 PRR4Q16378 134 aa4.79□□□□□ -1.64
PDGFC-205ENST00000506880 SPCS1Q9Y6A9 102 aa4.79□□□□□ -1.64
PDGFC-205ENST00000506880 CCKP06307 115 aa4.77□□□□□ -1.65
PDGFC-205ENST00000506880 F8W1H4 67 aa4.76□□□□□ -1.65
PDGFC-205ENST00000506880 K7EP34 96 aa4.76□□□□□ -1.65
PDGFC-205ENST00000506880 C1orf195Q5TG92 126 aa4.76□□□□□ -1.65
PDGFC-205ENST00000506880 A0A1W2PNM2 257 aa4.75□□□□□ -1.65
PDGFC-205ENST00000506880 PCP4L1A6NKN8 68 aa4.75□□□□□ -1.65
PDGFC-205ENST00000506880 J3KT08 172 aa4.75□□□□□ -1.65
PDGFC-205ENST00000506880 Q6ZQT0 140 aa4.75□□□□□ -1.65
PDGFC-205ENST00000506880 NAA38Q9BRA0 125 aaKnown RBP4.75□□□□□ -1.65
PDGFC-205ENST00000506880 KRTAP13-3Q3SY46 172 aa4.74□□□□□ -1.65
PDGFC-205ENST00000506880 A0A087WSZ3 146 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms