RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 OBSCNQ5VST9 7968 aa3.27□□□□□ -1.89
CSMD3-208ENST00000497026 DYNC1H1Q14204 4646 aaKnown RBP3.27□□□□□ -1.89
CSMD3-208ENST00000497026 TRGV4A0A0C4DH28 118 aa3.27□□□□□ -1.89
CSMD3-208ENST00000497026 TRBV7-4A0A0J9YYF1 115 aa3.27□□□□□ -1.89
CSMD3-208ENST00000497026 IGKV2-29A2NJV5 120 aaPredicted RBP3.27□□□□□ -1.89
CSMD3-208ENST00000497026 K7EQD1 137 aa3.27□□□□□ -1.89
CSMD3-208ENST00000497026 UBE2BP63146 152 aa3.27□□□□□ -1.89
CSMD3-208ENST00000497026 SS18Q15532 418 aa3.27□□□□□ -1.89
CSMD3-208ENST00000497026 RNASE13Q5GAN3 156 aaKnown RBP3.27□□□□□ -1.89
CSMD3-208ENST00000497026 CHCHD7Q9BUK0 85 aa3.27□□□□□ -1.89
CSMD3-208ENST00000497026 LINC00474Q9P2X8 69 aa3.27□□□□□ -1.89
CSMD3-208ENST00000497026 DNAH11Q96DT5 4516 aa3.26□□□□□ -1.89
CSMD3-208ENST00000497026 HECTD4Q9Y4D8 3996 aa3.26□□□□□ -1.89
CSMD3-208ENST00000497026 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.26□□□□□ -1.89
CSMD3-208ENST00000497026 LOC110117498A0A087WWA1 95 aa3.26□□□□□ -1.89
CSMD3-208ENST00000497026 TMEM254Q8TBM7 123 aa3.26□□□□□ -1.89
CSMD3-208ENST00000497026 PKHD1P08F94 4074 aa3.26□□□□□ -1.89
CSMD3-208ENST00000497026 IGHV3-73A0A0B4J1V6 119 aa3.25□□□□□ -1.89
CSMD3-208ENST00000497026 LINC00158P58513 81 aa3.25□□□□□ -1.89
CSMD3-208ENST00000497026 HAMPP81172 84 aa3.25□□□□□ -1.89
CSMD3-208ENST00000497026 C1orf134Q5TEV5 83 aa3.25□□□□□ -1.89
CSMD3-208ENST00000497026 WFDC10BQ8IUB3 73 aa3.25□□□□□ -1.89
CSMD3-208ENST00000497026 C6orf223Q8N319 242 aa3.25□□□□□ -1.89
CSMD3-208ENST00000497026 LINC00337Q8N6G1 96 aa3.25□□□□□ -1.89
CSMD3-208ENST00000497026 COX7B2Q8TF08 81 aa3.25□□□□□ -1.89
CSMD3-208ENST00000497026 Q9UF83 564 aa3.25□□□□□ -1.89
CSMD3-208ENST00000497026 PKD1P98161 4303 aa3.25□□□□□ -1.89
CSMD3-208ENST00000497026 KIAA1109Q2LD37 5005 aa3.24□□□□□ -1.89
CSMD3-208ENST00000497026 TRBV6-4A0A1B0GX49 114 aa3.24□□□□□ -1.89
CSMD3-208ENST00000497026 UBE2L6O14933 153 aa3.24□□□□□ -1.89
CSMD3-208ENST00000497026 Q1T7F1 81 aa3.24□□□□□ -1.89
CSMD3-208ENST00000497026 C9orf129Q5T035 196 aaKnown RBP3.24□□□□□ -1.89
CSMD3-208ENST00000497026 LINC00242Q5T6M2 205 aa3.24□□□□□ -1.89
CSMD3-208ENST00000497026 Q6ZRN7 208 aaPredicted RBP3.24□□□□□ -1.89
CSMD3-208ENST00000497026 Q6ZVQ6 151 aa3.24□□□□□ -1.89
CSMD3-208ENST00000497026 KRTAP5-2Q701N4 177 aa3.24□□□□□ -1.89
CSMD3-208ENST00000497026 KTN1-AS1Q86SY8 53 aa3.24□□□□□ -1.89
CSMD3-208ENST00000497026 FAM104AQ969W3 186 aa3.24□□□□□ -1.89
CSMD3-208ENST00000497026 IGKV2-28A0A075B6P5 120 aa3.23□□□□□ -1.89
CSMD3-208ENST00000497026 NDUFS5O43920 106 aa3.23□□□□□ -1.89
CSMD3-208ENST00000497026 IGKV2D-28P01615 120 aa3.23□□□□□ -1.89
CSMD3-208ENST00000497026 UBE2AP49459 152 aa3.23□□□□□ -1.89
CSMD3-208ENST00000497026 FAM229BQ4G0N7 80 aa3.23□□□□□ -1.89
CSMD3-208ENST00000497026 Q6ZQT0 140 aa3.23□□□□□ -1.89
CSMD3-208ENST00000497026 Q75L30 129 aa3.23□□□□□ -1.89
CSMD3-208ENST00000497026 Q8N814 137 aa3.23□□□□□ -1.89
CSMD3-208ENST00000497026 LRP1BQ9NZR2 4599 aa3.22□□□□□ -1.89
CSMD3-208ENST00000497026 DNAH5Q8TE73 4624 aa3.22□□□□□ -1.89
CSMD3-208ENST00000497026 TRBV10-1A0A0K0K1A3 114 aa3.22□□□□□ -1.89
CSMD3-208ENST00000497026 BPY2O14599 106 aa3.22□□□□□ -1.89
CSMD3-208ENST00000497026 DNAH10OSP0CZ25 163 aa3.22□□□□□ -1.89
CSMD3-208ENST00000497026 A0A087X002 238 aa3.21□□□□□ -1.9
CSMD3-208ENST00000497026 IGHV3-38A0A0C4DH36 116 aa3.21□□□□□ -1.9
CSMD3-208ENST00000497026 hDV103S1A0JD37 113 aa3.21□□□□□ -1.9
CSMD3-208ENST00000497026 COX6A2Q02221 97 aa3.21□□□□□ -1.9
CSMD3-208ENST00000497026 LINC01556Q5JQF7 62 aa3.21□□□□□ -1.9
CSMD3-208ENST00000497026 LELP1Q5T871 98 aa3.21□□□□□ -1.9
CSMD3-208ENST00000497026 TOMM7Q9P0U1 55 aa3.21□□□□□ -1.9
CSMD3-208ENST00000497026 HERC2O95714 4834 aa3.21□□□□□ -1.9
CSMD3-208ENST00000497026 KRTAP16-1A8MUX0 517 aa3.2□□□□□ -1.9
CSMD3-208ENST00000497026 NTM-AS1Q6ZSK4 140 aa3.2□□□□□ -1.9
CSMD3-208ENST00000497026 HSPG2P98160 4391 aa3.2□□□□□ -1.9
CSMD3-208ENST00000497026 APOBP04114 4563 aaKnown RBP3.2□□□□□ -1.9
CSMD3-208ENST00000497026 A0A087WTM6 91 aa3.19□□□□□ -1.9
CSMD3-208ENST00000497026 A0A087WZ39 114 aa3.19□□□□□ -1.9
CSMD3-208ENST00000497026 LRCOL1A6NCL2 159 aa3.19□□□□□ -1.9
CSMD3-208ENST00000497026 NDUFB1O75438 58 aa3.19□□□□□ -1.9
CSMD3-208ENST00000497026 CDC42SE2Q9NRR3 84 aa3.19□□□□□ -1.9
CSMD3-208ENST00000497026 RYR1P21817 5038 aa3.19□□□□□ -1.9
CSMD3-208ENST00000497026 C16orf90A8MZG2 172 aa3.18□□□□□ -1.9
CSMD3-208ENST00000497026 CYP4F30PQ9H0H9 118 aa3.18□□□□□ -1.9
CSMD3-208ENST00000497026 RBM12B-AS1Q9P1G2 102 aa3.18□□□□□ -1.9
CSMD3-208ENST00000497026 TRBV6-8A0A0A6YYG3 113 aa3.17□□□□□ -1.9
CSMD3-208ENST00000497026 COX7BP24311 80 aa3.17□□□□□ -1.9
CSMD3-208ENST00000497026 COX17Q14061 63 aa3.17□□□□□ -1.9
CSMD3-208ENST00000497026 C6orf99Q4VX62 202 aa3.17□□□□□ -1.9
CSMD3-208ENST00000497026 LINC00575Q6W349 94 aa3.17□□□□□ -1.9
CSMD3-208ENST00000497026 Q6ZRP5 223 aa3.17□□□□□ -1.9
CSMD3-208ENST00000497026 Q8IZM0 81 aa3.17□□□□□ -1.9
CSMD3-208ENST00000497026 PRAC1Q96KF2 57 aa3.17□□□□□ -1.9
CSMD3-208ENST00000497026 LIMD2Q9BT23 127 aa3.17□□□□□ -1.9
CSMD3-208ENST00000497026 OCR1Q9BZK8 76 aa3.17□□□□□ -1.9
CSMD3-208ENST00000497026 TRAV22A0A0B4J277 110 aa3.16□□□□□ -1.9
CSMD3-208ENST00000497026 ZNF73O43830 326 aaPredicted RBP3.16□□□□□ -1.9
CSMD3-208ENST00000497026 CDK2AP2O75956 126 aa3.16□□□□□ -1.9
CSMD3-208ENST00000497026 IGKV4-1P06312 121 aa3.16□□□□□ -1.9
CSMD3-208ENST00000497026 VPREB1P12018 145 aa3.16□□□□□ -1.9
CSMD3-208ENST00000497026 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.16□□□□□ -1.9
CSMD3-208ENST00000497026 SCXQ7RTU7 201 aa3.16□□□□□ -1.9
CSMD3-208ENST00000497026 KLK12Q9UKR0 248 aa3.16□□□□□ -1.9
CSMD3-208ENST00000497026 NDUFAF8A1L188 74 aa3.15□□□□□ -1.91
CSMD3-208ENST00000497026 PSPHP1O15172 72 aa3.15□□□□□ -1.91
CSMD3-208ENST00000497026 PSCAO43653 123 aa3.15□□□□□ -1.91
CSMD3-208ENST00000497026 DSCR10P59022 87 aa3.15□□□□□ -1.91
CSMD3-208ENST00000497026 KRTAP10-1P60331 282 aa3.15□□□□□ -1.91
CSMD3-208ENST00000497026 ATP11AUNQ6ZP68 121 aa3.15□□□□□ -1.91
CSMD3-208ENST00000497026 C7orf65Q6ZTY9 151 aa3.15□□□□□ -1.91
CSMD3-208ENST00000497026 C1orf64Q8NEQ6 169 aa3.15□□□□□ -1.91
CSMD3-208ENST00000497026 HIGD2AQ9BW72 106 aa3.15□□□□□ -1.91
CSMD3-208ENST00000497026 PCLOQ9Y6V0 5065 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms