RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 DEFB116Q30KQ4 102 aa6.07□□□□□ -1.44
SYNE1-230ENST00000495090 ACANP16112 2415 aa6.07□□□□□ -1.44
SYNE1-230ENST00000495090 SPRR1BP22528 89 aa6.07□□□□□ -1.44
SYNE1-230ENST00000495090 C11orf45Q8TAV5 145 aa6.07□□□□□ -1.44
SYNE1-230ENST00000495090 SMR3AQ99954 134 aa6.07□□□□□ -1.44
SYNE1-230ENST00000495090 HIVEP1P15822 2718 aa6.06□□□□□ -1.44
SYNE1-230ENST00000495090 LINC00472Q9H8W2 130 aa6.06□□□□□ -1.44
SYNE1-230ENST00000495090 IGLV7-46A0A075B6I9 117 aa6.05□□□□□ -1.44
SYNE1-230ENST00000495090 A0A0G2JQZ4 141 aa6.05□□□□□ -1.44
SYNE1-230ENST00000495090 A0A1W2PNN7 141 aa6.05□□□□□ -1.44
SYNE1-230ENST00000495090 C16orf90A8MZG2 172 aa6.05□□□□□ -1.44
SYNE1-230ENST00000495090 RPL37AP61513 92 aaKnown RBP6.05□□□□□ -1.44
SYNE1-230ENST00000495090 CASC10Q5T4H9 136 aa6.05□□□□□ -1.44
SYNE1-230ENST00000495090 ATP11AUNQ6ZP68 121 aa6.05□□□□□ -1.44
SYNE1-230ENST00000495090 KTN1-AS1Q86SY8 53 aa6.05□□□□□ -1.44
SYNE1-230ENST00000495090 PRR15LQ9BU68 103 aa6.05□□□□□ -1.44
SYNE1-230ENST00000495090 H0Y9J4 135 aa6.04□□□□□ -1.44
SYNE1-230ENST00000495090 LCE2AQ5TA79 106 aaPredicted RBP6.04□□□□□ -1.44
SYNE1-230ENST00000495090 COA5Q86WW8 74 aa6.03□□□□□ -1.44
SYNE1-230ENST00000495090 A8MU10 97 aa6.03□□□□□ -1.44
SYNE1-230ENST00000495090 PRB2P02812 416 aaPredicted RBP6.03□□□□□ -1.44
SYNE1-230ENST00000495090 PRLHP81277 87 aa6.03□□□□□ -1.44
SYNE1-230ENST00000495090 MMP24-AS1A0A0U1RRL7 71 aa6.01□□□□□ -1.45
SYNE1-230ENST00000495090 UNC79Q9P2D8 2635 aa6.01□□□□□ -1.45
SYNE1-230ENST00000495090 NDUFS5O43920 106 aa6.01□□□□□ -1.45
SYNE1-230ENST00000495090 LCA10Q71F78 164 aa6.01□□□□□ -1.45
SYNE1-230ENST00000495090 TP53AIP1Q9HCN2 124 aa6.01□□□□□ -1.45
SYNE1-230ENST00000495090 KRTAP10-11P60412 298 aa6□□□□□ -1.45
SYNE1-230ENST00000495090 ASB16-AS1Q495Z4 193 aa6□□□□□ -1.45
SYNE1-230ENST00000495090 PHF5AQ7RTV0 110 aaKnown RBP6□□□□□ -1.45
SYNE1-230ENST00000495090 CDC42SE1Q9NRR8 79 aa6□□□□□ -1.45
SYNE1-230ENST00000495090 RBM12B-AS1Q9P1G2 102 aa6□□□□□ -1.45
SYNE1-230ENST00000495090 HELZ2Q9BYK8 2649 aaKnown RBP6□□□□□ -1.45
SYNE1-230ENST00000495090 PLAC8Q9NZF1 115 aa5.99□□□□□ -1.45
SYNE1-230ENST00000495090 LINC01558Q9Y6Z2 57 aa5.99□□□□□ -1.45
SYNE1-230ENST00000495090 A0A096LNI7 61 aa5.99□□□□□ -1.45
SYNE1-230ENST00000495090 A6NED7 52 aa5.99□□□□□ -1.45
SYNE1-230ENST00000495090 INAFM1C9JVW0 142 aa5.99□□□□□ -1.45
SYNE1-230ENST00000495090 NOTCH2Q04721 2471 aa5.98□□□□□ -1.45
SYNE1-230ENST00000495090 DNAH1Q9P2D7 4330 aa5.98□□□□□ -1.45
SYNE1-230ENST00000495090 A6NN06 94 aa5.98□□□□□ -1.45
SYNE1-230ENST00000495090 PRR26Q8N8Z3 221 aa5.98□□□□□ -1.45
SYNE1-230ENST00000495090 MOBPQ13875 183 aa5.97□□□□□ -1.45
SYNE1-230ENST00000495090 Q6ZR54 194 aa5.97□□□□□ -1.45
SYNE1-230ENST00000495090 FASNP49327 2511 aaKnown RBP5.97□□□□□ -1.45
SYNE1-230ENST00000495090 TENM4Q6N022 2769 aa5.96□□□□□ -1.45
SYNE1-230ENST00000495090 J3QL48 77 aa5.96□□□□□ -1.46
SYNE1-230ENST00000495090 SPTSSBQ8NFR3 76 aa5.95□□□□□ -1.46
SYNE1-230ENST00000495090 IGKV2-24A0A0C4DH68 120 aa5.93□□□□□ -1.46
SYNE1-230ENST00000495090 TENM1Q9UKZ4 2725 aa5.93□□□□□ -1.46
SYNE1-230ENST00000495090 C8orf87E5RJ46 101 aa5.92□□□□□ -1.46
SYNE1-230ENST00000495090 Q96NJ1 140 aa5.92□□□□□ -1.46
SYNE1-230ENST00000495090 PKD1L1Q8TDX9 2849 aa5.92□□□□□ -1.46
SYNE1-230ENST00000495090 C14orf177Q52M58 125 aa5.91□□□□□ -1.46
SYNE1-230ENST00000495090 C7orf65Q6ZTY9 151 aa5.91□□□□□ -1.46
SYNE1-230ENST00000495090 ITPR2Q14571 2701 aa5.91□□□□□ -1.46
SYNE1-230ENST00000495090 PCOTHQ58A44 107 aa5.91□□□□□ -1.46
SYNE1-230ENST00000495090 KRTAP11-1Q8IUC1 163 aa5.91□□□□□ -1.46
SYNE1-230ENST00000495090 C8orf17Q9NRJ1 99 aa5.91□□□□□ -1.46
SYNE1-230ENST00000495090 J3QKU1 62 aa5.9□□□□□ -1.46
SYNE1-230ENST00000495090 SPAG11AQ6PDA7 123 aa5.89□□□□□ -1.47
SYNE1-230ENST00000495090 KRTAP13-1Q8IUC0 172 aa5.89□□□□□ -1.47
SYNE1-230ENST00000495090 TRRAPQ9Y4A5 3859 aa5.89□□□□□ -1.47
SYNE1-230ENST00000495090 HRES1P13985 223 aa5.88□□□□□ -1.47
SYNE1-230ENST00000495090 TEP1Q99973 2627 aaKnown RBP5.88□□□□□ -1.47
SYNE1-230ENST00000495090 HECTD1Q9ULT8 2610 aa5.88□□□□□ -1.47
SYNE1-230ENST00000495090 TENM3Q9P273 2699 aa5.87□□□□□ -1.47
SYNE1-230ENST00000495090 A0A1B0GVX0 72 aa5.87□□□□□ -1.47
SYNE1-230ENST00000495090 NSD1Q96L73 2696 aaPredicted RBP5.87□□□□□ -1.47
SYNE1-230ENST00000495090 ATRQ13535 2644 aa5.86□□□□□ -1.47
SYNE1-230ENST00000495090 F8P00451 2351 aa5.86□□□□□ -1.47
SYNE1-230ENST00000495090 LINC00483Q53H64 154 aa5.86□□□□□ -1.47
SYNE1-230ENST00000495090 LCE2CQ5TA81 110 aa5.86□□□□□ -1.47
SYNE1-230ENST00000495090 MRPL34Q9BQ48 92 aaKnown RBP5.86□□□□□ -1.47
SYNE1-230ENST00000495090 KRTAP4-8Q9BYQ9 185 aa5.86□□□□□ -1.47
SYNE1-230ENST00000495090 CHTF8P0CG12 524 aa5.85□□□□□ -1.47
SYNE1-230ENST00000495090 SPINK7P58062 85 aa5.85□□□□□ -1.47
SYNE1-230ENST00000495090 KRTAP1-5Q9BYS1 174 aa5.85□□□□□ -1.47
SYNE1-230ENST00000495090 ANK2Q01484 3957 aa5.83□□□□□ -1.48
SYNE1-230ENST00000495090 CDK2AP2O75956 126 aa5.82□□□□□ -1.48
SYNE1-230ENST00000495090 FLNBO75369 2602 aaKnown RBP5.82□□□□□ -1.48
SYNE1-230ENST00000495090 IGHV6-1A0A0B4J1U7 121 aa5.82□□□□□ -1.48
SYNE1-230ENST00000495090 ZNF706Q9Y5V0 76 aaPredicted RBP5.81□□□□□ -1.48
SYNE1-230ENST00000495090 IGLV9-49A0A0B4J1Y8 123 aa5.8□□□□□ -1.48
SYNE1-230ENST00000495090 DNAH3Q8TD57 4116 aa5.8□□□□□ -1.48
SYNE1-230ENST00000495090 OTOGQ6ZRI0 2925 aa5.79□□□□□ -1.48
SYNE1-230ENST00000495090 KRTAP13-3Q3SY46 172 aa5.79□□□□□ -1.48
SYNE1-230ENST00000495090 TENM2Q9NT68 2774 aa5.79□□□□□ -1.48
SYNE1-230ENST00000495090 ACYP2P14621 99 aa5.78□□□□□ -1.48
SYNE1-230ENST00000495090 MDFIQ99750 246 aa5.78□□□□□ -1.48
SYNE1-230ENST00000495090 BAHCC1Q9P281 2608 aa5.78□□□□□ -1.48
SYNE1-230ENST00000495090 WWC2-AS2Q96NR7 200 aa5.78□□□□□ -1.48
SYNE1-230ENST00000495090 A0A087X002 238 aa5.77□□□□□ -1.49
SYNE1-230ENST00000495090 UBE2DNLQ8IWF7 75 aa5.75□□□□□ -1.49
SYNE1-230ENST00000495090 SPACA4Q8TDM5 124 aa5.75□□□□□ -1.49
SYNE1-230ENST00000495090 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.74□□□□□ -1.49
SYNE1-230ENST00000495090 PANO1I0J062 215 aa5.74□□□□□ -1.49
SYNE1-230ENST00000495090 NOTCH2NLQ7Z3S9 236 aa5.74□□□□□ -1.49
SYNE1-230ENST00000495090 DMAC1Q96GE9 116 aa5.74□□□□□ -1.49
SYNE1-230ENST00000495090 CMYA5Q8N3K9 4069 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms