RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 HINT1P49773 126 aaPredicted RBP3.94□□□□□ -1.78
VPS52-219ENST00000493379 KRTAP13-2Q52LG2 175 aa3.94□□□□□ -1.78
VPS52-219ENST00000493379 ZNF706Q9Y5V0 76 aaPredicted RBP3.94□□□□□ -1.78
VPS52-219ENST00000493379 C6orf99Q4VX62 202 aa3.93□□□□□ -1.78
VPS52-219ENST00000493379 OR13C6PQ8NH95 151 aa3.93□□□□□ -1.78
VPS52-219ENST00000493379 FAM218AQ96MZ4 157 aa3.93□□□□□ -1.78
VPS52-219ENST00000493379 HIST1H4GQ99525 98 aa3.93□□□□□ -1.78
VPS52-219ENST00000493379 HIGD2AQ9BW72 106 aa3.93□□□□□ -1.78
VPS52-219ENST00000493379 KRTAP4-2Q9BYR5 136 aa3.93□□□□□ -1.78
VPS52-219ENST00000493379 DHRS4-AS1Q9P1J3 65 aa3.93□□□□□ -1.78
VPS52-219ENST00000493379 A0A1B0GWB2 263 aa3.92□□□□□ -1.78
VPS52-219ENST00000493379 CFC1BP0CG36 223 aa3.92□□□□□ -1.78
VPS52-219ENST00000493379 CFC1P0CG37 223 aa3.92□□□□□ -1.78
VPS52-219ENST00000493379 CEND1Q8N111 149 aa3.92□□□□□ -1.78
VPS52-219ENST00000493379 SMIM11BQ8TCY0 68 aa3.92□□□□□ -1.78
VPS52-219ENST00000493379 ANAPC11Q9NYG5 84 aa3.92□□□□□ -1.78
VPS52-219ENST00000493379 SYNE2Q8WXH0 6885 aaKnown RBP3.91□□□□□ -1.78
VPS52-219ENST00000493379 A0A0B4J2C4 111 aa3.91□□□□□ -1.78
VPS52-219ENST00000493379 LOC105371267A0A1B0GV96 52 aa3.91□□□□□ -1.78
VPS52-219ENST00000493379 A6NDN8 102 aa3.91□□□□□ -1.78
VPS52-219ENST00000493379 COX7BP24311 80 aa3.91□□□□□ -1.78
VPS52-219ENST00000493379 SSBP3-AS1Q7Z2R9 100 aa3.91□□□□□ -1.78
VPS52-219ENST00000493379 UQCR10Q9UDW1 63 aa3.91□□□□□ -1.78
VPS52-219ENST00000493379 SSPOA2VEC9 5147 aa3.9□□□□□ -1.78
VPS52-219ENST00000493379 IGLV5-48A0A075B6I7 105 aa3.9□□□□□ -1.79
VPS52-219ENST00000493379 Q6ZVQ6 151 aa3.9□□□□□ -1.79
VPS52-219ENST00000493379 TYMSOSQ8TAI1 123 aa3.9□□□□□ -1.79
VPS52-219ENST00000493379 SMIM6P0DI80 62 aa3.89□□□□□ -1.79
VPS52-219ENST00000493379 HSD52Q0P140 79 aa3.89□□□□□ -1.79
VPS52-219ENST00000493379 SPAG11AQ6PDA7 123 aa3.89□□□□□ -1.79
VPS52-219ENST00000493379 LINC00575Q6W349 94 aa3.89□□□□□ -1.79
VPS52-219ENST00000493379 FXYD2P54710 66 aa3.88□□□□□ -1.79
VPS52-219ENST00000493379 RPS29P62273 56 aaKnown RBP3.88□□□□□ -1.79
VPS52-219ENST00000493379 VAMP3Q15836 100 aa3.88□□□□□ -1.79
VPS52-219ENST00000493379 BVES-AS1Q5T3Y7 98 aa3.88□□□□□ -1.79
VPS52-219ENST00000493379 C3orf22Q8N5N4 141 aa3.88□□□□□ -1.79
VPS52-219ENST00000493379 ST20-AS1Q8NBB2 130 aa3.88□□□□□ -1.79
VPS52-219ENST00000493379 TEX49A0A1B0GTD5 131 aa3.87□□□□□ -1.79
VPS52-219ENST00000493379 NHP2Q9NX24 153 aaKnown RBP3.87□□□□□ -1.79
VPS52-219ENST00000493379 PRO1854Q9UHT4 67 aa3.87□□□□□ -1.79
VPS52-219ENST00000493379 A0A1B0GX51 115 aa3.86□□□□□ -1.79
VPS52-219ENST00000493379 H0YGX0 51 aa3.86□□□□□ -1.79
VPS52-219ENST00000493379 Q8N377 158 aa3.86□□□□□ -1.79
VPS52-219ENST00000493379 LINC00304Q8N9R0 145 aa3.86□□□□□ -1.79
VPS52-219ENST00000493379 hADV29S1A0JD25 119 aa3.85□□□□□ -1.79
VPS52-219ENST00000493379 SPINK1P00995 79 aa3.85□□□□□ -1.79
VPS52-219ENST00000493379 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.85□□□□□ -1.79
VPS52-219ENST00000493379 NOTCH2NLQ7Z3S9 236 aa3.85□□□□□ -1.79
VPS52-219ENST00000493379 PPDPFLQ8WWR9 84 aa3.85□□□□□ -1.79
VPS52-219ENST00000493379 RAB37Q96AX2 223 aa3.85□□□□□ -1.79
VPS52-219ENST00000493379 C12orf57Q99622 126 aa3.85□□□□□ -1.79
VPS52-219ENST00000493379 IGLV8-61A0A075B6I0 122 aa3.84□□□□□ -1.79
VPS52-219ENST00000493379 SLC25A20O43772 301 aa3.84□□□□□ -1.79
VPS52-219ENST00000493379 LCE1AQ5T7P2 110 aa3.84□□□□□ -1.79
VPS52-219ENST00000493379 LAMTOR3Q9UHA4 124 aa3.84□□□□□ -1.79
VPS52-219ENST00000493379 CD164Q04900 197 aa3.83□□□□□ -1.8
VPS52-219ENST00000493379 OCIAD2Q56VL3 154 aa3.83□□□□□ -1.8
VPS52-219ENST00000493379 Q5XG85 94 aa3.83□□□□□ -1.8
VPS52-219ENST00000493379 Q8NBF4 154 aa3.83□□□□□ -1.8
VPS52-219ENST00000493379 MOBPQ13875 183 aa3.82□□□□□ -1.8
VPS52-219ENST00000493379 Q6ZQY7 126 aa3.82□□□□□ -1.8
VPS52-219ENST00000493379 PRO1933Q9H354 126 aa3.82□□□□□ -1.8
VPS52-219ENST00000493379 FCGBPQ9Y6R7 5405 aaPredicted RBP3.81□□□□□ -1.8
VPS52-219ENST00000493379 TSPAN13O95857 204 aa3.81□□□□□ -1.8
VPS52-219ENST00000493379 M0R143 59 aa3.8□□□□□ -1.8
VPS52-219ENST00000493379 SNCGO76070 127 aa3.8□□□□□ -1.8
VPS52-219ENST00000493379 FP248Q71RG6 208 aaPredicted RBP3.8□□□□□ -1.8
VPS52-219ENST00000493379 DEFB105AQ8NG35 78 aa3.8□□□□□ -1.8
VPS52-219ENST00000493379 TSTD3H0UI37 97 aa3.79□□□□□ -1.8
VPS52-219ENST00000493379 H3BQ85 93 aa3.79□□□□□ -1.8
VPS52-219ENST00000493379 H7C2G1 150 aa3.79□□□□□ -1.8
VPS52-219ENST00000493379 K7ERJ3 54 aa3.79□□□□□ -1.8
VPS52-219ENST00000493379 COX6CP09669 75 aa3.79□□□□□ -1.8
VPS52-219ENST00000493379 Q6JHZ5 121 aa3.79□□□□□ -1.8
VPS52-219ENST00000493379 USH2AO75445 5202 aa3.79□□□□□ -1.8
VPS52-219ENST00000493379 TPRXLQ17RH7 258 aa3.78□□□□□ -1.8
VPS52-219ENST00000493379 Q1RN00 199 aa3.78□□□□□ -1.8
VPS52-219ENST00000493379 C9orf153Q5TBE3 101 aa3.78□□□□□ -1.8
VPS52-219ENST00000493379 MACF1Q9UPN3 7388 aaKnown RBP3.77□□□□□ -1.81
VPS52-219ENST00000493379 TRACP01848 142 aa3.77□□□□□ -1.81
VPS52-219ENST00000493379 ASB16-AS1Q495Z4 193 aa3.77□□□□□ -1.81
VPS52-219ENST00000493379 Q6Q795 121 aa3.77□□□□□ -1.81
VPS52-219ENST00000493379 LST1O00453 97 aa3.76□□□□□ -1.81
VPS52-219ENST00000493379 NDUFV3P56181 108 aaKnown RBP3.76□□□□□ -1.81
VPS52-219ENST00000493379 PRR4Q16378 134 aa3.76□□□□□ -1.81
VPS52-219ENST00000493379 CLEC2BQ92478 149 aa3.76□□□□□ -1.81
VPS52-219ENST00000493379 SNHG12Q9BXW3 62 aa3.76□□□□□ -1.81
VPS52-219ENST00000493379 MUC17Q685J3 4493 aa3.75□□□□□ -1.81
VPS52-219ENST00000493379 NEBP20929 6669 aa3.75□□□□□ -1.81
VPS52-219ENST00000493379 IGLV7-46A0A075B6I9 117 aa3.75□□□□□ -1.81
VPS52-219ENST00000493379 TMEM256-PLSCR3K7ERE1 68 aa3.75□□□□□ -1.81
VPS52-219ENST00000493379 PSMB2P49721 201 aa3.75□□□□□ -1.81
VPS52-219ENST00000493379 IGFL1Q6UW32 110 aa3.75□□□□□ -1.81
VPS52-219ENST00000493379 LIMD2Q9BT23 127 aa3.75□□□□□ -1.81
VPS52-219ENST00000493379 A0A0G2JQZ4 141 aa3.74□□□□□ -1.81
VPS52-219ENST00000493379 KRTAP13-3Q3SY46 172 aa3.74□□□□□ -1.81
VPS52-219ENST00000493379 RETNLBQ9BQ08 111 aa3.74□□□□□ -1.81
VPS52-219ENST00000493379 ORMDL1Q9P0S3 153 aa3.74□□□□□ -1.81
VPS52-219ENST00000493379 TRBV7-7A0A0K0K1E9 115 aa3.73□□□□□ -1.81
VPS52-219ENST00000493379 F8WEM9 126 aa3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms